Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p12320 Brassica napus HOM05D003999 ORTHO05D005219 2.6e-45 185.3 110 100.0
C09p14530 Brassica napus HOM05D003999 ORTHO05D005219 1.5e-40 169.5 102 97.1
BcaC04g22860 Brassica carinata HOM05D003999 ORTHO05D005219 4.6e-34 147.9 101 78.2
BolC9t54356H Brassica oleracea HOM05D003999 ORTHO05D005219 6.0e-34 147.5 101 80.2
BcaB07g31614 Brassica carinata HOM05D003999 ORTHO05D005219 9.9e-29 130.2 131 56.5
Carub.0003s3349 Capsella rubella HOM05D003999 ORTHO05D005219 5.1e-25 117.9 151 49.7
Sp3g32620 Schrenkiella parvula HOM05D003999 ORTHO05D005219 6.6e-25 117.5 116 66.4
BraA09t36876Z Brassica rapa HOM05D003999 ORTHO05D005219 2.5e-24 115.5 95 61.1
AT2G19260 Arabidopsis thaliana HOM05D003999 ORTHO05D005219 4.3e-24 114.8 122 51.6
AL3G49030 Arabidopsis lyrata HOM05D003999 ORTHO05D005219 5.6e-24 114.4 122 52.5
BcaC06g36543 Brassica carinata HOM05D003999 ORTHO05D005219 1.6e-23 112.8 97 61.9
Thhalv10022602m.g Eutrema salsugineum HOM05D003999 ORTHO05D005219 1.6e-23 112.8 115 54.8
C07p03110 Brassica napus HOM05D003999 ORTHO05D005219 3.6e-23 111.7 97 60.8
BolC7t40703H Brassica oleracea HOM05D003999 ORTHO05D005219 3.6e-23 111.7 97 60.8
BcaB03g16715 Brassica carinata HOM05D003999 ORTHO05D005219 8.1e-23 110.5 102 57.8
A07p01530 Brassica napus HOM05D003999 ORTHO05D005219 2.4e-22 109.0 93 61.3
BraA07t27954Z Brassica rapa HOM05D003999 ORTHO05D005219 2.4e-22 109.0 93 61.3
CARHR109720 Cardamine hirsuta HOM05D003999 ORTHO05D005219 2.4e-22 109.0 121 50.4
Aa31LG8G16300 Aethionema arabicum HOM05D003999 ORTHO05D005219 7.6e-13 77.4 142 48.6
THA.LOC104814650 Tarenaya hassleriana HOM05D003999 ORTHO05D005219 2.2e-12 75.9 52 57.7
Duzib106G1697 Durio zibethinus HOM05D003999 ORTHO05D005219 1.4e-11 73.2 52 55.8
Gohir.A10G181100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 1.4e-11 73.2 52 55.8
Actinidia27131 Actinidia chinensis HOM05D003999 ORTHO05D005219 1.9e-11 72.8 50 60.0
Actinidia29951 Actinidia chinensis HOM05D003999 ORTHO05D005219 1.9e-11 72.8 50 60.0
MELO3C017428.2 Cucumis melo HOM05D003999 ORTHO05D005219 2.4e-11 72.4 53 58.5
Gohir.D10G188000 Gossypium hirsutum HOM05D003999 ORTHO05D005219 2.4e-11 72.4 52 55.8
Gorai.011G210800 Gossypium raimondii HOM05D003999 ORTHO05D005219 2.4e-11 72.4 52 55.8
Thecc.10G174600 Theobroma cacao HOM05D003999 ORTHO05D005219 3.2e-11 72.0 52 57.7
TWI63G1413 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 3.2e-11 72.0 52 55.8
Actinidia38494 Actinidia chinensis HOM05D003999 ORTHO05D005219 4.2e-11 71.6 50 58.0
MD13G1241700 Malus domestica HOM05D003999 ORTHO05D005219 5.4e-11 71.2 52 59.6
Gohir.D06G185700 Gossypium hirsutum HOM05D003999 ORTHO05D005219 7.1e-11 70.9 89 41.6
Gorai.010G217300 Gossypium raimondii HOM05D003999 ORTHO05D005219 7.1e-11 70.9 89 41.6
FAN18G4269 Fragaria x ananassa HOM05D003999 ORTHO05D005219 9.3e-11 70.5 52 55.8
Potri.006G075400 Populus trichocarpa HOM05D003999 ORTHO05D005219 9.3e-11 70.5 52 53.8
CsaV3_1G031880 Cucumis sativus L. HOM05D003999 ORTHO05D005219 1.2e-10 70.1 52 57.7
Dinv41175 Davidia involucrata HOM05D003999 ORTHO05D005219 1.2e-10 70.1 53 54.7
vmacro05997 Vaccinium macrocarpon HOM05D003999 ORTHO05D005219 1.2e-10 70.1 50 56.0
Gohir.A06G176100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 2.1e-10 69.3 99 37.4
COL.COLO4_08503 Corchorus olitorius HOM05D003999 ORTHO05D005219 2.7e-10 68.9 104 40.4
Duzib114G0910 Durio zibethinus HOM05D003999 ORTHO05D005219 2.7e-10 68.9 52 53.8
CSS0024594 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 3.5e-10 68.6 52 53.8
RcHm_v2.0_Chr7g0219501 Rosa chinensis HOM05D003999 ORTHO05D005219 3.5e-10 68.6 52 55.8
Sabra06G0056300 Salix brachista HOM05D003999 ORTHO05D005219 3.5e-10 68.6 50 54.0
TWI34G1954 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 3.5e-10 68.6 52 51.9
Rhsim03G0266100 Rhododendron simsii HOM05D003999 ORTHO05D005219 4.6e-10 68.2 50 56.0
Prupe.1G075400 Prunus persica HOM05D003999 ORTHO05D005219 6.0e-10 67.8 101 37.6
Cc00_g03720 Coffea canephora HOM05D003999 ORTHO05D005219 7.8e-10 67.4 52 53.8
Cc06_g20850 Coffea canephora HOM05D003999 ORTHO05D005219 7.8e-10 67.4 52 53.8
FAN13G0316 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.0e-09 67.0 52 53.8
Potri.018G142300 Populus trichocarpa HOM05D003999 ORTHO05D005219 1.3e-09 66.6 52 51.9
Sabra18G0116200 Salix brachista HOM05D003999 ORTHO05D005219 1.3e-09 66.6 52 51.9
FAN04G0885 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.7e-09 66.2 50 54.0
DCAR_014666 Daucus carota HOM05D003999 ORTHO05D005219 2.3e-09 65.9 52 51.9
Hund06701 Selenicereus undatus HOM05D003999 ORTHO05D005219 3.0e-09 65.5 52 53.8
Sed0001699 Sechium edule HOM05D003999 ORTHO05D005219 3.9e-09 65.1 54 55.6
TAR625G1146 Trochodendron aralioides HOM05D003999 ORTHO05D005219 3.9e-09 65.1 53 52.8
Peaxi162Scf00670g00347 Petunia axillaris HOM05D003999 ORTHO05D005219 5.1e-09 64.7 50 52.0
Haze_22020 Corylus avellana HOM05D003999 ORTHO05D005219 6.6e-09 64.3 52 53.8
Eucgr.C02221 Eucalyptus grandis HOM05D003999 ORTHO05D005219 6.6e-09 64.3 50 56.0
Atru.chr7.755 Acer truncatum HOM05D003999 ORTHO05D005219 8.7e-09 63.9 101 35.6
Atru.chr7.776 Acer truncatum HOM05D003999 ORTHO05D005219 8.7e-09 63.9 101 35.6
Cfa013453 Carpinus fangiana HOM05D003999 ORTHO05D005219 8.7e-09 63.9 52 51.9
Nn8g40781 Nelumbo nucifera HOM05D003999 ORTHO05D005219 8.7e-09 63.9 52 48.1
Oeu064556.1 Olea europaea HOM05D003999 ORTHO05D005219 8.7e-09 63.9 52 46.2
MD06G1235600 Malus domestica HOM05D003999 ORTHO05D005219 1.5e-08 63.2 48 52.1
CiPaw.07G197100 Carya illinoinensis HOM05D003999 ORTHO05D005219 3.3e-08 62.0 53 50.9
MBI13_g34042_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 3.3e-08 62.0 50 52.0
VMungo1309G0585 Vigna mungo HOM05D003999 ORTHO05D005219 3.3e-08 62.0 52 50.0
ATR0626G364 Amborella trichopoda HOM05D003999 ORTHO05D005219 4.3e-08 61.6 51 52.9
Nitab4.5_0001225g0140 Nicotiana tabacum HOM05D003999 ORTHO05D005219 4.3e-08 61.6 50 50.0
Phvul.009G117100 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 4.3e-08 61.6 52 50.0
HPP92_010790 Vanilla planifolia HOM05D003999 ORTHO05D005219 5.6e-08 61.2 51 47.1
Solyc02g069980.4 Solanum lycopersicum HOM05D003999 ORTHO05D005219 7.3e-08 60.8 50 50.0
PGSC0003DMG400021118 Solanum tuberosum HOM05D003999 ORTHO05D005219 7.3e-08 60.8 50 50.0
ECA240G0372 Erigeron canadensis HOM05D003999 ORTHO05D005219 9.6e-08 60.5 52 50.0
Migut.L01882 Erythranthe guttata HOM05D003999 ORTHO05D005219 9.6e-08 60.5 52 48.1
PGR044G2313 Punica granatum HOM05D003999 ORTHO05D005219 9.6e-08 60.5 87 33.3
Sed0015737 Sechium edule HOM05D003999 ORTHO05D005219 9.6e-08 60.5 52 51.9
CAN.G79.26 Capsicum annuum HOM05D003999 ORTHO05D005219 1.3e-07 60.1 52 51.9
Ciclev10010423m.g Citrus clementina HOM05D003999 ORTHO05D005219 1.3e-07 60.1 52 48.1
Haze_18974 Corylus avellana HOM05D003999 ORTHO05D005219 1.3e-07 60.1 50 46.0
Haze_18980 Corylus avellana HOM05D003999 ORTHO05D005219 1.3e-07 60.1 50 46.0
Manes.06G019800 Manihot esculenta HOM05D003999 ORTHO05D005219 1.3e-07 60.1 51 49.0
Nitab4.5_0001583g0100 Nicotiana tabacum HOM05D003999 ORTHO05D005219 1.3e-07 60.1 50 48.0
EL10Ac8g19270 Beta vulgaris HOM05D003999 ORTHO05D005219 1.6e-07 59.7 52 51.9
Sopen02g019140 Solanum pennellii HOM05D003999 ORTHO05D005219 1.6e-07 59.7 50 50.0
Lsat_1_v5_gn_7_51121 Lactuca sativa HOM05D003999 ORTHO05D005219 2.1e-07 59.3 52 48.1
MBI16_g05835_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 2.1e-07 59.3 50 48.0
CSS0017119 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 2.8e-07 58.9 47 55.3
CiPaw.15G150400 Carya illinoinensis HOM05D003999 ORTHO05D005219 2.8e-07 58.9 48 52.1
DCAR_020148 Daucus carota HOM05D003999 ORTHO05D005219 2.8e-07 58.9 50 48.0
FAN13G0118 Fragaria x ananassa HOM05D003999 ORTHO05D005219 2.8e-07 58.9 48 50.0
Glyma.06G001400 Glycine max HOM05D003999 ORTHO05D005219 2.8e-07 58.9 52 48.1
DCAR_018034 Daucus carota HOM05D003999 ORTHO05D005219 3.6e-07 58.5 52 50.0
Lalb_Chr11g0061221 Lupinus albus HOM05D003999 ORTHO05D005219 3.6e-07 58.5 52 46.2
Prupe.5G240400 Prunus persica HOM05D003999 ORTHO05D005219 3.6e-07 58.5 48 50.0
RcHm_v2.0_Chr7g0177591 Rosa chinensis HOM05D003999 ORTHO05D005219 4.8e-07 58.2 48 50.0
TPR.G6349 Trifolium pratense HOM05D003999 ORTHO05D005219 4.8e-07 58.2 52 44.2
MSTRG.26544 Avicennia marina HOM05D003999 ORTHO05D005219 8.1e-07 57.4 52 46.2
SGA_v2.0_scaffold231G43410 Striga asiatica HOM05D003999 ORTHO05D005219 8.1e-07 57.4 52 46.2
FvH4_5g18011 Fragaria vesca HOM05D003999 ORTHO05D005219 1.1e-06 57.0 48 47.9
FAN18G0538 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.1e-06 57.0 48 47.9
Sc08g0004740 Simmondsia chinensis HOM05D003999 ORTHO05D005219 1.1e-06 57.0 50 42.0
Cfa020676 Carpinus fangiana HOM05D003999 ORTHO05D005219 1.4e-06 56.6 48 43.8
Ciclev10008331m.g Citrus clementina HOM05D003999 ORTHO05D005219 1.4e-06 56.6 46 47.8
Mapoly0046s0104 Marchantia polymorpha HOM05D003999 ORTHO05D005219 1.4e-06 56.6 50 44.0
Os04g0425100 Oryza sativa ssp. japonica HOM05D003999 ORTHO05D005219 1.4e-06 56.6 51 49.0
Psat5g048320 Pisum sativum HOM05D003999 ORTHO05D005219 1.4e-06 56.6 52 44.2
Atru.chr7.2670 Acer truncatum HOM05D003999 ORTHO05D005219 1.8e-06 56.2 46 45.7
SEGI_29375 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 1.8e-06 56.2 50 44.0
Medtr3g100350 Medicago truncatula HOM05D003999 ORTHO05D005219 2.4e-06 55.8 52 46.2
Glyma.04G001900 Glycine max HOM05D003999 ORTHO05D005219 3.1e-06 55.5 52 46.2
PSO170G0656 Papaver somniferum HOM05D003999 ORTHO05D005219 3.1e-06 55.5 50 42.0
HanXRQChr09g0244721 Helianthus annuus HOM05D003999 ORTHO05D005219 4.0e-06 55.1 52 46.2
arahy.Tifrunner.gnm1.ann1.K74ZDU Arachis hypogaea HOM05D003999 ORTHO05D005219 5.3e-06 54.7 51 45.1
arahy.Tifrunner.gnm1.ann1.M9AABA Arachis hypogaea HOM05D003999 ORTHO05D005219 5.3e-06 54.7 51 45.1
AUR62027455 Chenopodium quinoa HOM05D003999 ORTHO05D005219 6.9e-06 54.3 53 45.3
AUR62031249 Chenopodium quinoa HOM05D003999 ORTHO05D005219 6.9e-06 54.3 53 45.3


User provided reference genes

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