Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 1.4e-45 186.0 100 100.0
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 6.6e-40 167.2 100 94.0
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 4.0e-29 131.3 117 70.9
BcaC04g22938 Brassica carinata HOM05D001533 ORTHO05D019802 5.4e-26 120.9 99 73.7
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 7.1e-26 120.6 127 63.0
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 7.1e-26 120.6 127 63.0
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 7.1e-26 120.6 127 63.0
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 7.1e-26 120.6 127 63.0
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 7.1e-26 120.6 127 63.0
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 1.2e-25 119.8 127 63.0
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.2e-25 119.8 127 63.0
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.2e-25 119.8 127 63.0
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 2.7e-25 118.6 127 62.2
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 6.0e-25 117.5 127 62.2
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 6.0e-25 117.5 127 62.2
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 6.0e-25 117.5 127 61.4
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 6.0e-25 117.5 127 62.2
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 6.0e-25 117.5 127 61.4
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 6.0e-25 117.5 127 61.4
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 7.8e-25 117.1 127 61.4
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 6.6e-24 114.0 100 70.0
C09p13680 Brassica napus HOM05D001533 ORTHO05D019802 1.5e-23 112.8 92 75.0
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 3.6e-22 108.2 111 64.0
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 3.6e-22 108.2 127 57.5
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 9.0e-21 103.6 91 68.1
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 2.0e-20 102.4 127 55.9
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 2.6e-20 102.1 127 55.9
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 3.4e-20 101.7 91 65.9
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 4.5e-20 101.3 91 65.9
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 4.5e-20 101.3 91 65.9
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 4.5e-20 101.3 91 65.9
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 5.8e-20 100.9 127 55.1
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 5.8e-20 100.9 91 65.9
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 5.8e-20 100.9 91 65.9
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 5.8e-20 100.9 102 59.8
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 7.6e-20 100.5 91 64.8
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 7.6e-20 100.5 111 57.7
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 9.9e-20 100.1 127 55.9
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 9.9e-20 100.1 91 64.8
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 1.3e-19 99.8 91 65.9
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 1.3e-19 99.8 127 53.5
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 1.3e-19 99.8 127 54.3
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 1.3e-19 99.8 91 64.8
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 1.7e-19 99.4 111 57.7
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.7e-19 99.4 111 57.7
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.7e-19 99.4 111 57.7
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 2.2e-19 99.0 127 53.5
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 2.2e-19 99.0 127 55.1
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 2.2e-19 99.0 127 54.3
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 2.2e-19 99.0 100 61.0
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 2.9e-19 98.6 103 60.2
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 3.8e-19 98.2 111 55.0
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 4.9e-19 97.8 91 64.8
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 4.9e-19 97.8 127 52.8
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 4.9e-19 97.8 111 56.8
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 4.9e-19 97.8 111 56.8
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 4.9e-19 97.8 111 58.6
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 8.4e-19 97.1 100 58.0
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 1.1e-18 96.7 91 62.6
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 1.1e-18 96.7 111 57.7
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 1.4e-18 96.3 128 51.6
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 1.4e-18 96.3 127 51.2
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 1.4e-18 96.3 111 57.7
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 1.4e-18 96.3 127 54.3
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.4e-18 96.3 127 52.8
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 1.9e-18 95.9 91 62.6
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 1.9e-18 95.9 111 57.7
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.9e-18 95.9 91 63.7
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 1.9e-18 95.9 127 52.8
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 2.4e-18 95.5 111 55.9
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 2.4e-18 95.5 127 53.5
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 3.2e-18 95.1 127 52.8
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 3.2e-18 95.1 128 51.6
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 3.2e-18 95.1 127 52.8
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 4.2e-18 94.7 111 54.1
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 5.4e-18 94.4 100 61.0
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 5.4e-18 94.4 127 52.8
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 7.1e-18 94.0 91 61.5
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 9.3e-18 93.6 127 52.0
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 9.3e-18 93.6 111 53.2
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.2e-17 93.2 127 52.8
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 1.2e-17 93.2 140 48.6
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 1.2e-17 93.2 111 53.2
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 1.6e-17 92.8 127 50.4
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 2.1e-17 92.4 91 61.5
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 2.1e-17 92.4 91 61.5
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 2.7e-17 92.0 127 52.0
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 2.7e-17 92.0 104 60.6
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 3.5e-17 91.7 100 58.0
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 3.5e-17 91.7 99 63.6
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 6.0e-17 90.9 91 57.1
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 6.0e-17 90.9 91 57.1
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 7.9e-17 90.5 104 58.7
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 1.0e-16 90.1 104 59.6
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 1.8e-16 89.4 105 56.2
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 1.8e-16 89.4 127 49.6
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 1.8e-16 89.4 104 59.6
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.8e-16 89.4 99 61.6
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 3.9e-16 88.2 112 52.7
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 6.7e-16 87.4 147 44.9
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 8.7e-16 87.0 120 47.5
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 4.3e-15 84.7 101 54.5
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 4.3e-15 84.7 99 58.6
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 5.6e-15 84.3 111 49.5
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 2.8e-14 82.0 111 49.5
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 1.8e-13 79.3 90 55.6
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 1.8e-13 79.3 104 52.9
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 6.9e-13 77.4 111 47.7
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 6.9e-13 77.4 90 54.4
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 1.5e-12 76.3 104 51.0
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 5.8e-12 74.3 127 43.3
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 5.8e-12 74.3 91 51.6
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 7.6e-12 73.9 127 44.1
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.7e-11 72.8 127 46.5
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 1.7e-11 72.8 127 46.5
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 6.5e-11 70.9 111 45.9
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 7.1e-10 67.4 93 48.4
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 9.3e-10 67.0 91 48.4
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 9.3e-10 67.0 91 48.4
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 9.3e-10 67.0 91 48.4
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 9.3e-10 67.0 91 48.4
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 1.6e-09 66.2 91 48.4
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 7.9e-09 63.9 49 75.5
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 1.0e-08 63.5 54 66.7
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.0e-08 63.5 111 43.2
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.3e-08 63.2 127 43.3
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 1.3e-08 63.2 127 40.9
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 1.8e-08 62.8 42 78.6
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 1.8e-08 62.8 42 78.6
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 2.3e-08 62.4 49 75.5
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 3.9e-08 61.6 42 78.6
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 3.9e-08 61.6 42 78.6
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 6.7e-08 60.8 42 76.2
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 6.7e-08 60.8 42 78.6
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 8.7e-08 60.5 42 76.2
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 8.7e-08 60.5 83 50.6
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 5.7e-07 57.8 128 37.5
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 9.6e-07 57.0 90 46.7
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 1.6e-06 56.2 42 69.0
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 1.6e-06 56.2 39 74.4
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 2.8e-06 55.5 40 72.5
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 2.8e-06 55.5 126 38.1


User provided reference genes

Program Settings