Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p11280 Brassica napus HOM05D000880 ORTHO05D004760 1.3e-188 662.9 346 100.0
A04p00500 Brassica napus HOM05D000880 ORTHO05D004760 3.9e-180 634.8 346 96.8
A04p15040 Brassica napus HOM05D000880 ORTHO05D004760 1.0e-143 513.8 310 90.3
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 1.5e-123 446.8 417 64.0
BraA04t17148Z Brassica rapa HOM05D000880 ORTHO05D004760 1.3e-122 443.7 278 88.1
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 1.7e-122 443.4 438 61.4
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 1.3e-111 407.1 440 59.3
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 4.8e-106 388.7 277 80.9
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 1.3e-103 380.6 286 77.6
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 1.9e-102 376.7 291 75.9
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 3.2e-102 375.9 286 75.9
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 1.2e-101 374.0 280 77.9
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 2.5e-94 349.7 294 71.8
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 2.5e-94 349.7 280 73.6
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 8.0e-93 344.7 426 53.8
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 4.3e-86 322.4 289 68.5
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 2.0e-83 313.5 284 67.3
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 1.3e-79 300.8 288 63.9
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 3.3e-78 296.2 289 63.0
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 1.8e-76 290.4 278 63.7
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 5.2e-76 288.9 283 60.8
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 3.7e-74 282.7 283 61.5
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 4.9e-74 282.3 287 61.7
BolC8t52610H Brassica oleracea HOM05D000880 ORTHO05D004760 1.6e-69 267.3 343 52.2
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 1.9e-65 253.8 280 57.1
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 5.4e-65 252.3 286 59.1
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 2.3e-63 246.9 293 53.2
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 2.3e-63 246.9 285 57.5
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 1.1e-57 228.0 288 54.5
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 4.9e-50 202.6 299 49.2
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 4.9e-42 176.0 275 47.6
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 3.0e-39 166.8 279 46.6
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 3.3e-38 163.3 283 45.9
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 4.3e-38 162.9 273 45.1
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 9.3e-33 145.2 312 39.1
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 1.1e-30 138.3 295 38.0
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.5e-30 137.9 295 37.6
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 3.3e-30 136.7 302 37.7
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 5.6e-30 136.0 315 37.5
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 5.6e-30 136.0 271 38.7
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 1.3e-29 134.8 304 36.2
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 2.1e-29 134.0 275 38.2
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 1.1e-28 131.7 308 39.3
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 1.1e-28 131.7 288 36.8
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 2.4e-28 130.6 295 37.3
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 2.4e-28 130.6 289 37.7
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 2.4e-28 130.6 300 37.7
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 3.1e-28 130.2 301 39.2
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 5.3e-28 129.4 307 36.8
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 5.3e-28 129.4 299 36.5
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 9.0e-28 128.6 299 36.5
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 3.4e-27 126.7 302 37.7
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 4.5e-27 126.3 277 39.0
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 5.8e-27 125.9 313 37.7
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 7.6e-27 125.6 287 36.2
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 1.0e-26 125.2 292 35.3
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 1.7e-26 124.4 305 36.7
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 2.2e-26 124.0 309 35.6
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 2.2e-26 124.0 275 38.9
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 4.9e-26 122.9 319 36.4
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 1.1e-25 121.7 324 36.4
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 1.9e-25 120.9 307 36.8
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 1.9e-25 120.9 268 36.9
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 1.9e-25 120.9 281 36.7
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 3.2e-25 120.2 273 38.5
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 4.2e-25 119.8 282 36.2
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 4.2e-25 119.8 275 36.7
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 1.2e-24 118.2 281 35.6
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 1.6e-24 117.9 300 35.0
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 1.6e-24 117.9 299 35.5
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 2.1e-24 117.5 288 36.5
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 3.5e-24 116.7 297 37.4
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 6.0e-24 115.9 297 34.7
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 7.9e-24 115.5 316 34.5
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 1.3e-23 114.8 307 34.5
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 1.3e-23 114.8 314 35.0
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 1.3e-23 114.8 328 32.9
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 1.8e-23 114.4 305 32.8
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 1.8e-23 114.4 279 35.1
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 3.0e-23 113.6 306 34.3
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 3.0e-23 113.6 315 35.9
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 3.0e-23 113.6 275 36.4
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 5.1e-23 112.8 301 34.2
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 6.7e-23 112.5 313 34.8
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 6.7e-23 112.5 297 33.0
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 1.1e-22 111.7 275 34.5
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 1.5e-22 111.3 301 36.2
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 1.9e-22 110.9 308 34.7
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 1.9e-22 110.9 296 33.8
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 3.3e-22 110.2 298 35.9
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 4.3e-22 109.8 204 41.2
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 4.3e-22 109.8 304 33.6
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 4.3e-22 109.8 304 34.2
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 5.7e-22 109.4 325 36.0
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 7.4e-22 109.0 307 33.2
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 9.7e-22 108.6 280 35.0
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 9.7e-22 108.6 307 36.2
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 9.7e-22 108.6 314 35.0
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.3e-21 108.2 312 33.7
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 2.2e-21 107.5 310 33.2
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 2.2e-21 107.5 304 31.9
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 3.7e-21 106.7 309 34.0
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 1.1e-20 105.1 280 32.9
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 1.1e-20 105.1 308 36.4
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 1.1e-20 105.1 335 33.4
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 1.4e-20 104.8 294 33.3
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 1.8e-20 104.4 315 33.3
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 2.4e-20 104.0 310 32.6
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 4.1e-20 103.2 304 32.9
C09p01900 Brassica napus HOM05D000880 ORTHO05D004760 9.0e-20 102.1 179 44.7
BolC9t53125H Brassica oleracea HOM05D000880 ORTHO05D004760 9.0e-20 102.1 179 44.7
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 9.0e-20 102.1 310 32.6
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 1.2e-19 101.7 312 32.7
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 1.2e-19 101.7 302 32.5
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.5e-19 101.3 307 32.2
C07p40760 Brassica napus HOM05D000880 ORTHO05D004760 2.0e-19 100.9 67 83.6
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 4.5e-19 99.8 291 32.6
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 4.5e-19 99.8 272 33.5
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 1.0e-18 98.6 274 33.9
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 1.0e-18 98.6 304 31.6
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 5.0e-18 96.3 296 32.1
A10p23840 Brassica napus HOM05D000880 ORTHO05D004760 1.4e-17 94.7 66 81.8
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 2.5e-17 94.0 273 31.5
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 3.2e-17 93.6 303 30.7
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 5.5e-17 92.8 290 33.1
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 9.4e-17 92.0 281 32.4
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 9.4e-17 92.0 323 30.3
A04p15090 Brassica napus HOM05D000880 ORTHO05D014501 2.7e-16 90.5 44 95.5
A04p15050 Brassica napus HOM05D000880 ORTHO05D014501 4.6e-16 89.7 43 97.7
PSO210G4167 Papaver somniferum HOM05D000880 ORTHO05D004760 1.4e-15 88.2 191 38.7
C07p25280 Brassica napus HOM05D000426 ORTHO05D014501 3.9e-15 86.7 44 90.9
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 1.5e-14 84.7 285 30.5
C07p40770 Brassica napus HOM05D000426 ORTHO05D014501 1.7e-13 81.3 46 82.6
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 1.7e-13 81.3 299 30.4
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 8.2e-13 79.0 289 31.1
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 1.1e-12 78.6 280 27.5
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 3.1e-12 77.0 274 27.7
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 5.0e-10 69.7 219 34.7
BolC7t41999H Brassica oleracea HOM05D000426 ORTHO05D014501 6.5e-10 69.3 60 63.3
BolC2t10735H Brassica oleracea HOM05D000426 ORTHO05D014501 1.1e-09 68.6 44 77.3
BolC4t27729H Brassica oleracea HOM05D000426 ORTHO05D014501 1.1e-09 68.6 44 77.3
BcaC03g16814 Brassica carinata HOM05D000426 ORTHO05D014501 1.4e-09 68.2 44 77.3
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 1.4e-09 68.2 281 31.7
BolC6t37843H Brassica oleracea HOM05D000426 ORTHO05D014501 2.5e-09 67.4 95 46.3
BcaC08g45058 Brassica carinata HOM05D000426 ORTHO05D014501 3.2e-09 67.0 81 51.9
MSTRG.25474 Avicennia marina HOM05D000880 ORTHO05D004760 4.2e-09 66.6 85 47.1
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 5.5e-09 66.2 290 30.0
Thhalv10025224m.g Eutrema salsugineum HOM05D000426 ORTHO05D000328 2.1e-08 64.3 44 70.5
Oeu000538.1 Olea europaea HOM05D000880 ORTHO05D004760 2.1e-08 64.3 99 38.4
BcaC09g50672 Brassica carinata HOM05D000426 ORTHO05D000328 3.6e-08 63.5 44 68.2
A01p17320 Brassica napus HOM05D000426 ORTHO05D000328 3.6e-08 63.5 44 68.2
A03p56480 Brassica napus HOM05D000426 ORTHO05D000328 3.6e-08 63.5 44 70.5
C01p21820 Brassica napus HOM05D000426 ORTHO05D000328 3.6e-08 63.5 44 68.2
C07p54700 Brassica napus HOM05D000426 ORTHO05D000328 3.6e-08 63.5 44 70.5
BolC1t02108H Brassica oleracea HOM05D000426 ORTHO05D000328 3.6e-08 63.5 44 68.2
BolC7t45959H Brassica oleracea HOM05D000426 ORTHO05D000328 3.6e-08 63.5 44 70.5
BraA01t01687Z Brassica rapa HOM05D000426 ORTHO05D000328 3.6e-08 63.5 44 68.2
BraA03t14719Z Brassica rapa HOM05D000426 ORTHO05D000328 3.6e-08 63.5 44 70.5
BcaC06g32769 Brassica carinata HOM05D000426 ORTHO05D000328 4.7e-08 63.2 44 70.5
Sp7g24100 Schrenkiella parvula HOM05D000426 ORTHO05D000328 1.0e-07 62.0 44 70.5
BcaB03g12493 Brassica carinata HOM05D000426 ORTHO05D000328 1.4e-07 61.6 44 68.2
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 1.4e-07 61.6 301 26.6
BcaC07g38221 Brassica carinata HOM05D000426 ORTHO05D000328 1.8e-07 61.2 44 68.2
A08p20910 Brassica napus HOM05D000426 ORTHO05D000328 1.8e-07 61.2 44 68.2
C08p09780 Brassica napus HOM05D000426 ORTHO05D000328 1.8e-07 61.2 44 68.2
BolC8t48649H Brassica oleracea HOM05D000426 ORTHO05D000328 1.8e-07 61.2 44 68.2
BraA08t34044Z Brassica rapa HOM05D000426 ORTHO05D000328 1.8e-07 61.2 44 68.2
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 2.3e-07 60.8 205 35.1
CAN.G1465.7 Capsicum annuum HOM05D000880 ORTHO05D004760 2.3e-07 60.8 68 50.0
AL7G26900 Arabidopsis lyrata HOM05D000426 ORTHO05D000328 3.0e-07 60.5 44 65.9
BcaNung05232 Brassica carinata HOM05D000426 ORTHO05D014501 3.9e-07 60.1 64 56.2
Carub.0007s1487 Capsella rubella HOM05D000426 ORTHO05D000328 8.8e-07 58.9 44 65.9
AT4G26080 Arabidopsis thaliana HOM05D000426 ORTHO05D000328 2.6e-06 57.4 44 63.6
CARHR233590 Cardamine hirsuta HOM05D000426 ORTHO05D000328 4.4e-06 56.6 44 63.6
VMungo1383G0715 Vigna mungo HOM05D000880 ORTHO05D004760 7.4e-06 55.8 49 55.1


User provided reference genes

Program Settings