Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 8.0e-126 453.8 227 100.0
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 6.6e-120 434.1 227 96.5
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 1.7e-104 382.9 232 85.3
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 1.2e-102 376.7 229 84.3
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 2.6e-100 369.0 227 85.0
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 1.3e-88 330.1 233 77.3
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 1.3e-88 330.1 233 77.3
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 1.4e-85 320.1 235 69.8
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 1.4e-85 320.1 235 69.8
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 1.4e-85 320.1 235 69.8
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 1.8e-85 319.7 235 69.8
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 1.8e-85 319.7 235 69.8
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 6.4e-83 311.2 235 68.5
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 8.7e-80 300.8 236 67.8
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 1.4e-66 256.9 230 60.4
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 5.5e-66 255.0 232 59.5
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 1.5e-63 246.9 232 56.9
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 5.0e-59 231.9 232 53.9
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 3.0e-56 222.6 233 51.1
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 2.8e-54 216.1 232 50.4
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 1.1e-53 214.2 234 50.4
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 5.0e-51 205.3 235 48.1
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 3.6e-49 199.1 226 47.3
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.0e-48 197.6 235 46.4
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 1.4e-48 197.2 235 46.8
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 2.3e-48 196.4 235 47.2
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 3.0e-48 196.1 235 46.0
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 5.1e-48 195.3 232 46.6
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 1.5e-47 193.7 237 48.1
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 9.7e-47 191.0 232 46.6
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 1.7e-46 190.3 234 44.0
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 4.8e-46 188.7 232 46.1
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 4.8e-46 188.7 234 44.9
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 6.3e-46 188.3 234 46.6
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 1.1e-45 187.6 233 45.1
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 1.8e-45 186.8 232 46.1
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 7.0e-45 184.9 235 44.7
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 9.1e-45 184.5 234 44.9
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 1.2e-44 184.1 230 46.1
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 2.6e-44 183.0 235 43.4
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 4.5e-44 182.2 230 43.5
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 7.7e-44 181.4 235 42.6
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 1.0e-43 181.0 234 44.9
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 2.2e-43 179.9 224 43.8
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 5.0e-43 178.7 234 41.9
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 5.0e-43 178.7 235 42.1
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 1.1e-42 177.6 233 42.9
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.1e-42 177.6 237 42.2
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 1.5e-42 177.2 224 45.5
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 1.9e-42 176.8 235 44.3
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 1.9e-42 176.8 235 44.3
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 1.9e-42 176.8 235 45.5
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 2.5e-42 176.4 231 41.6
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 4.2e-42 175.6 230 43.0
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 5.5e-42 175.3 222 43.7
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 7.2e-42 174.9 212 47.6
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 7.2e-42 174.9 238 43.3
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 9.4e-42 174.5 232 45.3
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 1.2e-41 174.1 222 44.6
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 1.2e-41 174.1 224 43.8
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 2.1e-41 173.3 210 44.8
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 2.7e-41 172.9 235 43.8
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 2.7e-41 172.9 228 43.0
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 4.7e-41 172.2 235 43.8
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 4.7e-41 172.2 232 45.7
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 4.7e-41 172.2 232 42.7
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 6.1e-41 171.8 212 47.2
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 6.1e-41 171.8 217 44.7
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 6.1e-41 171.8 222 43.2
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 8.0e-41 171.4 235 42.1
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 8.0e-41 171.4 232 45.7
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 1.8e-40 170.2 222 42.3
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 3.0e-40 169.5 229 42.4
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 4.0e-40 169.1 226 44.7
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 6.7e-40 168.3 222 41.9
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 1.5e-39 167.2 197 46.7
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.5e-39 167.2 229 42.4
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 1.5e-39 167.2 222 42.8
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 2.0e-39 166.8 224 42.9
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 4.4e-39 165.6 233 41.6
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 1.7e-38 163.7 235 39.1
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 1.7e-38 163.7 202 46.0
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 2.8e-38 162.9 237 41.8
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 2.8e-38 162.9 223 45.3
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 4.8e-38 162.2 236 39.0
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 6.3e-38 161.8 229 44.1
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 8.2e-38 161.4 240 41.7
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 8.2e-38 161.4 232 38.4
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 1.4e-37 160.6 235 40.0
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.1e-37 159.1 240 40.8
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.1e-37 159.1 240 40.8
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 4.1e-37 159.1 227 40.1
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 4.1e-37 159.1 236 40.7
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 5.3e-37 158.7 223 42.2
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 9.1e-37 157.9 229 40.2
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 9.1e-37 157.9 235 40.9
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.2e-36 157.5 224 41.5
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 1.6e-36 157.1 156 52.6
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 1.6e-36 157.1 232 41.4
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 2.0e-36 156.8 240 40.4
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 3.5e-36 156.0 225 39.6
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 4.5e-36 155.6 230 40.9
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 5.9e-36 155.2 233 43.3
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.0e-35 154.5 232 41.8
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 1.0e-35 154.5 229 41.9
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.3e-35 154.1 232 39.2
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.7e-35 153.7 230 38.7
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 2.9e-35 152.9 228 39.9
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 3.8e-35 152.5 200 42.5
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 6.5e-35 151.8 231 39.4
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 1.5e-34 150.6 236 39.0
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 1.9e-34 150.2 221 40.3
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 3.2e-34 149.4 232 40.9
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 3.2e-34 149.4 224 38.4
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 4.2e-34 149.1 219 37.0
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 9.4e-34 147.9 238 39.1
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 4.7e-33 145.6 233 38.6
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 8.0e-33 144.8 240 38.3
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 1.8e-32 143.7 231 40.3
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 1.8e-32 143.7 210 41.9
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 8.8e-32 141.4 232 39.2
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 8.8e-32 141.4 240 37.9
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 8.8e-32 141.4 221 36.7
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 2.6e-31 139.8 214 36.9
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 7.5e-31 138.3 156 46.2
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 2.2e-30 136.7 205 41.5
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 2.8e-30 136.3 232 39.2
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 3.7e-30 136.0 154 47.4
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 4.8e-30 135.6 177 40.7
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 8.3e-30 134.8 222 34.2
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 1.8e-29 133.7 149 47.0
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 2.4e-29 133.3 226 37.6
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.6e-28 130.6 166 42.8
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 2.0e-28 130.2 206 37.9
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 7.7e-28 128.3 225 37.3
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 7.7e-28 128.3 156 42.9
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 1.7e-27 127.1 201 38.8
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 2.2e-27 126.7 201 38.8
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 2.2e-27 126.7 181 37.6
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 2.9e-27 126.3 179 38.5
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 3.8e-27 125.9 181 37.0
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 5.5e-26 122.1 231 33.8
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 3.6e-25 119.4 190 40.5
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 4.7e-25 119.0 220 36.4
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.8e-24 117.1 144 44.4
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 3.4e-23 112.8 221 31.7
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 9.8e-23 111.3 219 35.2
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 8.3e-22 108.2 219 33.8
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 8.3e-22 108.2 181 34.8
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 9.1e-21 104.8 115 47.0
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 2.0e-20 103.6 181 35.9
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 2.3e-19 100.1 124 44.4
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 3.8e-19 99.4 157 39.5
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 6.6e-19 98.6 220 28.6
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 4.3e-18 95.9 143 39.2
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 9.5e-18 94.7 81 55.6
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.2e-17 94.4 201 35.3
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 2.8e-17 93.2 120 42.5
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 3.0e-16 89.7 237 29.1
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 3.4e-15 86.3 218 28.9
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 2.2e-14 83.6 141 38.3
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 1.1e-13 81.3 117 38.5
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.2e-12 77.8 182 33.0
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 3.0e-11 73.2 120 37.5
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 6.6e-11 72.0 57 54.4
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 8.6e-11 71.6 75 45.3
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 8.6e-11 71.6 80 42.5
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 4.3e-10 69.3 93 47.3
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 4.3e-10 69.3 117 37.6
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 5.6e-10 68.9 90 45.6
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.4e-08 64.3 134 32.8
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 3.1e-08 63.2 80 46.2
VMungo1383G0391 Vigna mungo HOM05D003762 ORTHO05D004374 5.8e-07 58.9 120 33.3


User provided reference genes

Program Settings