Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p04980 Brassica napus HOM05D006821 ORTHO05D008740 2.9e-177 625.2 331 100.0
BraA09t36137Z Brassica rapa HOM05D006821 ORTHO05D008740 5.2e-174 614.4 331 98.5
BcaC04g23721 Brassica carinata HOM05D006821 ORTHO05D008740 6.6e-161 570.9 331 92.4
C09p05380 Brassica napus HOM05D006821 ORTHO05D008740 6.6e-161 570.9 331 92.4
BcaB04g19632 Brassica carinata HOM05D006821 ORTHO05D008740 9.5e-160 567.0 328 90.5
BolC9t53466H Brassica oleracea HOM05D006821 ORTHO05D008740 9.5e-160 567.0 331 91.8
Sp2g20040 Schrenkiella parvula HOM05D006821 ORTHO05D008740 9.2e-147 523.9 324 85.5
Thhalv10004570m.g Eutrema salsugineum HOM05D006821 ORTHO05D008740 1.7e-145 519.6 329 83.0
AL6G40810 Arabidopsis lyrata HOM05D006821 ORTHO05D008740 3.9e-137 491.9 332 78.3
Carub.0006s2610 Capsella rubella HOM05D006821 ORTHO05D008740 5.6e-136 488.0 332 76.2
CARHR185340 Cardamine hirsuta HOM05D006821 ORTHO05D008740 2.0e-133 479.6 333 78.7
AT5G28830 Arabidopsis thaliana HOM05D006821 ORTHO05D008740 1.9e-131 473.0 332 77.1
Aa31LG11G8550 Aethionema arabicum HOM05D006821 ORTHO05D008740 1.1e-120 437.2 329 69.9
THA.LOC104821676 Tarenaya hassleriana HOM05D006821 ORTHO05D008740 1.9e-107 393.3 324 63.6
Thecc.05G283900 Theobroma cacao HOM05D006821 ORTHO05D008740 3.7e-95 352.4 328 55.8
COL.COLO4_15343 Corchorus olitorius HOM05D006821 ORTHO05D008740 1.5e-93 347.1 328 55.8
Duzib177G0830 Durio zibethinus HOM05D006821 ORTHO05D008740 7.2e-91 338.2 328 54.6
Duzib128G0425 Durio zibethinus HOM05D006821 ORTHO05D008740 2.7e-90 336.3 328 54.0
Actinidia18357 Actinidia chinensis HOM05D006821 ORTHO05D008740 3.6e-90 335.9 326 55.5
MD04G1224000 Malus domestica HOM05D006821 ORTHO05D008740 1.0e-89 334.3 325 54.8
Manes.09G153500 Manihot esculenta HOM05D006821 ORTHO05D008740 2.5e-88 329.7 325 52.0
Manes.08G134300 Manihot esculenta HOM05D006821 ORTHO05D008740 7.4e-88 328.2 325 52.6
PGSC0003DMG400019432 Solanum tuberosum HOM05D006821 ORTHO05D008740 2.2e-87 326.6 328 54.3
Gorai.013G120900 Gossypium raimondii HOM05D006821 ORTHO05D008740 3.7e-87 325.9 330 52.4
MD12G1240800 Malus domestica HOM05D006821 ORTHO05D008740 3.7e-87 325.9 325 52.0
Gohir.D13G107900 Gossypium hirsutum HOM05D006821 ORTHO05D008740 4.8e-87 325.5 330 53.0
Solyc01g097350.4 Solanum lycopersicum HOM05D006821 ORTHO05D008740 1.4e-86 323.9 326 53.4
CAN.G134.100 Capsicum annuum HOM05D006821 ORTHO05D008740 1.8e-86 323.6 326 52.5
Gohir.A13G104500 Gossypium hirsutum HOM05D006821 ORTHO05D008740 3.1e-86 322.8 330 52.4
Sopen01g041020 Solanum pennellii HOM05D006821 ORTHO05D008740 3.1e-86 322.8 328 53.7
Nitab4.5_0012228g0010 Nicotiana tabacum HOM05D006821 ORTHO05D008740 4.1e-86 322.4 326 53.1
Prupe.6G342700 Prunus persica HOM05D006821 ORTHO05D008740 5.3e-86 322.0 325 52.9
TAR633G1083 Trochodendron aralioides HOM05D006821 ORTHO05D008740 5.3e-86 322.0 328 53.0
TWI56G0757 Tripterygium wilfordii HOM05D006821 ORTHO05D008740 3.4e-85 319.3 328 51.5
RcHm_v2.0_Chr3g0451171 Rosa chinensis HOM05D006821 ORTHO05D008740 1.0e-84 317.8 328 52.7
TAR362G0286 Trochodendron aralioides HOM05D006821 ORTHO05D008740 1.0e-84 317.8 328 53.0
CSS0006427 Camellia sinensis var. sinensis HOM05D006821 ORTHO05D008740 2.2e-84 316.6 326 50.6
Cc02_g30600 Coffea canephora HOM05D006821 ORTHO05D008740 2.9e-84 316.2 326 52.8
GSVIVG01021794001 Vitis vinifera HOM05D006821 ORTHO05D008740 1.9e-83 313.5 325 51.1
Potri.005G052900 Populus trichocarpa HOM05D006821 ORTHO05D008740 2.5e-83 313.2 328 50.6
FAN02G2705 Fragaria x ananassa HOM05D006821 ORTHO05D008740 5.5e-83 312.0 328 51.5
Atru.chr2.810 Acer truncatum HOM05D006821 ORTHO05D008740 7.2e-83 311.6 332 50.9
FvH4_6g02990 Fragaria vesca HOM05D006821 ORTHO05D008740 1.2e-82 310.8 328 51.5
FAN09G4578 Fragaria x ananassa HOM05D006821 ORTHO05D008740 1.2e-82 310.8 328 51.2
FAN14G2672 Fragaria x ananassa HOM05D006821 ORTHO05D008740 2.7e-82 309.7 328 51.2
Nitab4.5_0001592g0080 Nicotiana tabacum HOM05D006821 ORTHO05D008740 2.7e-82 309.7 344 50.0
Ciclev10001807m.g Citrus clementina HOM05D006821 ORTHO05D008740 4.7e-82 308.9 329 51.7
Haze_04355 Corylus avellana HOM05D006821 ORTHO05D008740 4.7e-82 308.9 327 49.5
CiPaw.07G067000 Carya illinoinensis HOM05D006821 ORTHO05D008740 1.4e-81 307.4 328 48.8
Potri.013G040500 Populus trichocarpa HOM05D006821 ORTHO05D008740 2.3e-81 306.6 333 49.2
Glyma.19G244500 Glycine max HOM05D006821 ORTHO05D008740 3.9e-81 305.8 326 50.3
FAN05G4221 Fragaria x ananassa HOM05D006821 ORTHO05D008740 5.1e-81 305.4 328 50.3
CANSAT54G2350 Cannabis sativa HOM05D006821 ORTHO05D008740 6.7e-81 305.1 325 48.0
FAN05G1836 Fragaria x ananassa HOM05D006821 ORTHO05D008740 1.5e-80 303.9 328 50.3
Peaxi162Scf00282g00328 Petunia axillaris HOM05D006821 ORTHO05D008740 2.0e-80 303.5 328 49.4
arahy.Tifrunner.gnm1.ann1.7SV4PL Arachis hypogaea HOM05D006821 ORTHO05D008740 4.4e-80 302.4 329 49.5
Glyma.03G246900 Glycine max HOM05D006821 ORTHO05D008740 9.7e-80 301.2 325 49.5
Lj1g0025723 Lotus japonicus HOM05D006821 ORTHO05D008740 2.2e-79 300.1 326 49.7
Aqoxy2G03492 Aquilegia oxysepala HOM05D006821 ORTHO05D008740 4.8e-79 298.9 324 50.3
Sc20g0000300 Simmondsia chinensis HOM05D006821 ORTHO05D008740 4.8e-79 298.9 327 48.9
Hma1.2p1_0195F.1_g084560 Hydrangea macrophylla HOM05D006821 ORTHO05D008740 1.4e-78 297.4 329 49.8
Oeu038441.1 Olea europaea HOM05D006821 ORTHO05D008740 3.1e-78 296.2 328 49.7
Cfa006429 Carpinus fangiana HOM05D006821 ORTHO05D008740 7.0e-78 295.0 325 48.0
Dinv10030 Davidia involucrata HOM05D006821 ORTHO05D008740 1.2e-77 294.3 319 49.8
AUR62004944 Chenopodium quinoa HOM05D006821 ORTHO05D008740 5.9e-77 292.0 326 50.3
Lalb_Chr04g0262251 Lupinus albus HOM05D006821 ORTHO05D008740 2.2e-76 290.0 325 45.5
Hund22116 Selenicereus undatus HOM05D006821 ORTHO05D008740 6.5e-76 288.5 325 47.7
Sabra05G0046500 Salix brachista HOM05D006821 ORTHO05D008740 4.2e-75 285.8 381 43.3
DCAR_029732 Daucus carota HOM05D006821 ORTHO05D008740 7.2e-75 285.0 324 48.8
Ca_09420_v3 Cicer arietinum L. HOM05D006821 ORTHO05D008740 1.2e-74 284.3 321 48.3
Phvul.006G101500 Phaseolus vulgaris HOM05D006821 ORTHO05D008740 1.2e-74 284.3 324 46.3
PGR004G1103 Punica granatum HOM05D006821 ORTHO05D008740 1.6e-74 283.9 327 46.2
Sed0012709 Sechium edule HOM05D006821 ORTHO05D008740 2.1e-74 283.5 327 47.4
AUR62001014 Chenopodium quinoa HOM05D006821 ORTHO05D008740 2.7e-74 283.1 326 48.5
Medtr7g115070 Medicago truncatula HOM05D006821 ORTHO05D008740 4.7e-74 282.3 332 47.6
PSO210G3560 Papaver somniferum HOM05D006821 ORTHO05D008740 1.8e-73 280.4 328 48.8
PSO210G3856 Papaver somniferum HOM05D006821 ORTHO05D008740 1.8e-73 280.4 328 48.8
QL03p025768 Quercus lobata HOM05D006821 ORTHO05D008740 2.3e-73 280.0 386 42.7
Lj7A490T61 Lonicera japonica HOM05D006821 ORTHO05D008740 3.0e-73 279.6 382 42.4
MBI11_g26138_MAGBIO Magnolia biondii HOM05D006821 ORTHO05D008740 5.2e-73 278.9 326 47.5
CsaV3_2G004180 Cucumis sativus L. HOM05D006821 ORTHO05D008740 3.3e-72 276.2 328 45.4
VMungo0540G1649 Vigna mungo HOM05D006821 ORTHO05D008740 3.3e-72 276.2 326 46.0
PSO461G0046 Papaver somniferum HOM05D006821 ORTHO05D008740 4.4e-72 275.8 326 48.2
Eucgr.H04340 Eucalyptus grandis HOM05D006821 ORTHO05D008740 4.8e-71 272.3 325 48.0
ClCG02G016590 Citrullus lanatus HOM05D006821 ORTHO05D008740 8.2e-71 271.6 327 45.3
Cpa.g.sc117.86 Carica papaya HOM05D006821 ORTHO05D008740 7.7e-69 265.0 302 47.0
Psat2g125040 Pisum sativum HOM05D006821 ORTHO05D008740 1.0e-68 264.6 325 46.5
Migut.N01911 Erythranthe guttata HOM05D006821 ORTHO05D008740 2.2e-68 263.5 328 45.4
SalBow4G1195 Salvia bowleyana HOM05D006821 ORTHO05D008740 1.2e-66 257.7 328 45.7
SalBow4G2420 Salvia bowleyana HOM05D006821 ORTHO05D008740 1.2e-66 257.7 328 45.7
EL10Ac4g09134 Beta vulgaris HOM05D006821 ORTHO05D008740 7.5e-64 248.4 407 39.3
CDE04G3363 Ceratophyllum demersum HOM05D006821 ORTHO05D008740 3.5e-61 239.6 326 43.6
CDE07G0065 Ceratophyllum demersum HOM05D006821 ORTHO05D008740 4.5e-61 239.2 326 43.6
Nn1g02511 Nelumbo nucifera HOM05D006821 ORTHO05D008740 1.0e-60 238.0 213 55.4
HPP92_024348 Vanilla planifolia HOM05D006821 ORTHO05D008740 1.3e-60 237.7 328 44.2
ATR0606G003 Amborella trichopoda HOM05D006821 ORTHO05D008740 2.9e-60 236.5 330 43.6
MELO3C004376.2 Cucumis melo HOM05D006821 ORTHO05D008740 3.8e-60 236.1 328 42.7
TPR.G6944 Trifolium pratense HOM05D006821 ORTHO05D008740 3.2e-59 233.0 290 44.8
PSO210G3711 Papaver somniferum HOM05D006821 ORTHO05D008740 7.2e-59 231.9 225 56.4
SEGI_00561 Sequoiadendron giganteum HOM05D006821 ORTHO05D008740 2.3e-57 226.9 336 42.6
Dinv04728 Davidia involucrata HOM05D006821 ORTHO05D008740 6.3e-55 218.8 214 51.9
Pp3c20_9750 Physcomitrium patens HOM05D006821 ORTHO05D008740 2.5e-43 180.3 339 36.0
Mapoly0083s0056 Marchantia polymorpha HOM05D006821 ORTHO05D008740 2.6e-40 170.2 251 41.4
Ah.07g201960 Amaranthus hybridus HOM05D006821 ORTHO05D008740 4.7e-34 149.4 326 30.7
CBR_g10979 Chara braunii HOM05D006821 ORTHO05D008740 8.3e-31 138.7 289 31.8
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 1.3e-28 131.3 336 30.7
SMO259G0008 Selaginella moellendorffii HOM05D006821 ORTHO05D008740 1.1e-27 128.3 230 34.3
CARHR032970 Cardamine hirsuta HOM05D006821 ORTHO05D008740 3.1e-25 120.2 80 78.8
AagrBONN_evm.TU.Sc2ySwM_228.4145 Anthoceros agrestis HOM05D006821 ORTHO05D008740 2.1e-18 97.4 177 37.3
CARHR215930 Cardamine hirsuta HOM05D006821 ORTHO05D008740 8.9e-17 92.0 75 68.0
Mapoly0103s0051 Marchantia polymorpha HOM05D004759 ORTHO05D005722 1.4e-14 84.7 288 25.7
HanXRQChr17g0555191 Helianthus annuus HOM05D004759 ORTHO05D005722 7.8e-13 79.0 326 23.9
Lsat_1_v5_gn_8_126780 Lactuca sativa HOM05D004759 ORTHO05D005722 2.3e-12 77.4 324 23.1
Potri.009G127800 Populus trichocarpa HOM05D004759 ORTHO05D005722 2.3e-12 77.4 325 25.2
AL7G10680 Arabidopsis lyrata HOM05D004759 ORTHO05D005722 3.3e-11 73.6 228 27.6
CARHR247920 Cardamine hirsuta HOM05D004759 ORTHO05D005722 7.3e-11 72.4 232 24.1
Os03g0250000 Oryza sativa ssp. japonica HOM05D004759 ORTHO05D005722 1.6e-10 71.2 276 26.1
MD05G1114400 Malus domestica HOM05D004759 ORTHO05D005722 2.1e-10 70.9 321 22.4
Cc02_g16670 Coffea canephora HOM05D004759 ORTHO05D005722 2.8e-10 70.5 328 21.6
COL.COLO4_17240 Corchorus olitorius HOM05D004759 ORTHO05D005722 2.8e-10 70.5 322 19.9
Sp7g37010 Schrenkiella parvula HOM05D004759 ORTHO05D005722 2.8e-10 70.5 228 26.3
VMungo1309G1106 Vigna mungo HOM05D004759 ORTHO05D005722 2.8e-10 70.5 320 22.8
Aa31LG6G16400 Aethionema arabicum HOM05D004759 ORTHO05D005722 3.6e-10 70.1 233 24.9
Ah.01g009490 Amaranthus hybridus HOM05D004759 ORTHO05D005722 3.6e-10 70.1 232 24.6
AT4G38810 Arabidopsis thaliana HOM05D004759 ORTHO05D005722 3.6e-10 70.1 232 24.6
AUR62013108 Chenopodium quinoa HOM05D004759 ORTHO05D005722 3.6e-10 70.1 233 23.6
CiPaw.06G125800 Carya illinoinensis HOM05D004759 ORTHO05D005722 4.8e-10 69.7 328 22.9
GSVIVG01024116001 Vitis vinifera HOM05D004759 ORTHO05D005722 6.2e-10 69.3 321 21.5
A06p48900 Brassica napus HOM05D004759 ORTHO05D005722 8.1e-10 68.9 233 25.3
BraA06t27758Z Brassica rapa HOM05D004759 ORTHO05D005722 8.1e-10 68.9 233 25.3
Gohir.A03G202700 Gossypium hirsutum HOM05D004759 ORTHO05D005722 8.1e-10 68.9 321 20.9
Phvul.011G025600 Phaseolus vulgaris HOM05D004759 ORTHO05D005722 8.1e-10 68.9 321 21.2
Thecc.02G068600 Theobroma cacao HOM05D004759 ORTHO05D005722 8.1e-10 68.9 324 21.0
C07p63570 Brassica napus HOM05D004759 ORTHO05D005722 1.1e-09 68.6 234 25.6
BolC7t46770H Brassica oleracea HOM05D004759 ORTHO05D005722 1.1e-09 68.6 234 25.6
EL10Ac9g21461 Beta vulgaris HOM05D004759 ORTHO05D005722 1.4e-09 68.2 230 24.3
SMO169G0202 Selaginella moellendorffii HOM05D004759 ORTHO05D005722 1.4e-09 68.2 229 24.9
Lj5A186G40 Lonicera japonica HOM05D004759 ORTHO05D005722 1.8e-09 67.8 325 20.6
Peaxi162Scf00362g01041 Petunia axillaris HOM05D004759 ORTHO05D005722 1.8e-09 67.8 328 23.5
Sc18g0006740 Simmondsia chinensis HOM05D004759 ORTHO05D005722 2.4e-09 67.4 326 21.8
VMungo1127G1183 Vigna mungo HOM05D004759 ORTHO05D005722 3.1e-09 67.0 324 22.5
Medtr3g117680 Medicago truncatula HOM05D004759 ORTHO05D005722 4.0e-09 66.6 319 21.0
Thhalv10025463m.g Eutrema salsugineum HOM05D004759 ORTHO05D005722 6.9e-09 65.9 229 24.5
Gorai.005G251800 Gossypium raimondii HOM05D004759 ORTHO05D005722 6.9e-09 65.9 321 20.9
Sed0012827 Sechium edule HOM05D000600 ORTHO05D000432 9.0e-09 65.5 244 27.0
ECA233G0594 Erigeron canadensis HOM05D004759 ORTHO05D005722 1.2e-08 65.1 326 22.7
TWI31G1308 Tripterygium wilfordii HOM05D004759 ORTHO05D005722 2.0e-08 64.3 319 21.3
Pp3c5_21520 Physcomitrium patens HOM05D004759 ORTHO05D005722 2.6e-08 63.9 264 22.0
Gohir.D02G224000 Gossypium hirsutum HOM05D004759 ORTHO05D005722 3.4e-08 63.5 321 20.6
Gorai.008G032900 Gossypium raimondii HOM05D004759 ORTHO05D005722 3.4e-08 63.5 255 21.2
TAR365G0108 Trochodendron aralioides HOM05D006821 ORTHO05D008740 3.4e-08 63.5 142 32.4
ATR0481G015 Amborella trichopoda HOM05D004759 ORTHO05D005722 4.5e-08 63.2 277 23.8
HPP92_003524 Vanilla planifolia HOM05D004759 ORTHO05D005722 4.5e-08 63.2 131 27.5
HPP92_003533 Vanilla planifolia HOM05D004759 ORTHO05D005722 4.5e-08 63.2 231 23.8
SHI05655 Sapria himalayana HOM05D004759 ORTHO05D005722 9.9e-08 62.0 232 23.7
Psat7g178120 Pisum sativum HOM05D004759 ORTHO05D005722 1.3e-07 61.6 126 30.2
Zm00001eb224230 Zea mays HOM05D004759 ORTHO05D005722 1.3e-07 61.6 239 23.4
Actinidia00585 Actinidia chinensis HOM05D004759 ORTHO05D005722 1.7e-07 61.2 209 24.9
Aqoxy5G01775 Aquilegia oxysepala HOM05D004759 ORTHO05D005722 1.7e-07 61.2 197 23.4
PGR042G1303 Punica granatum HOM05D004759 ORTHO05D005722 1.7e-07 61.2 234 23.1
Aa31LG9G3980 Aethionema arabicum HOM05D006821 ORTHO05D059654 2.9e-07 60.5 41 73.2
Aa31sc1953G10 Aethionema arabicum HOM05D006821 ORTHO05D059742 3.8e-07 60.1 40 75.0
MBI05_g15352_MAGBIO Magnolia biondii HOM05D004759 ORTHO05D005722 3.8e-07 60.1 219 24.7
CANSAT25G1906 Cannabis sativa HOM05D004759 ORTHO05D005722 4.9e-07 59.7 172 24.4
Ca_18993_v3 Cicer arietinum L. HOM05D004759 ORTHO05D005722 4.9e-07 59.7 230 24.8
Duzib248G0603 Durio zibethinus HOM05D004759 ORTHO05D005722 6.4e-07 59.3 323 21.1
Medtr4g075610 Medicago truncatula HOM05D004759 ORTHO05D005722 6.4e-07 59.3 230 24.3
A06p38090 Brassica napus HOM05D006821 ORTHO05D008740 8.4e-07 58.9 43 69.8
MELO3C028972.2 Cucumis melo HOM05D006821 ORTHO05D034973 8.4e-07 58.9 80 38.8
Sed0015287 Sechium edule HOM05D004759 ORTHO05D005722 8.4e-07 58.9 244 26.2
THA.LOC104824783 Tarenaya hassleriana HOM05D004759 ORTHO05D005722 8.4e-07 58.9 232 24.1
Duzib132G0429 Durio zibethinus HOM05D004759 ORTHO05D005722 1.1e-06 58.5 233 22.3
Gohir.A12G040100 Gossypium hirsutum HOM05D004759 ORTHO05D005722 1.1e-06 58.5 235 21.7
Gohir.D12G032200 Gossypium hirsutum HOM05D004759 ORTHO05D005722 1.1e-06 58.5 235 21.3
Mapoly0031s0092 Marchantia polymorpha HOM05D001532 ORTHO05D001402 1.1e-06 58.5 115 33.0
Oeu002958.2 Olea europaea HOM05D004759 ORTHO05D005722 1.4e-06 58.2 188 22.3
TPR.G24580 Trifolium pratense HOM05D006821 ORTHO05D008740 1.9e-06 57.8 97 36.1
TPR.G38567 Trifolium pratense HOM05D004759 ORTHO05D005722 1.9e-06 57.8 237 24.1
vmacro22691 Vaccinium macrocarpon HOM05D004759 ORTHO05D005722 2.4e-06 57.4 230 23.0
Ciclev10028685m.g Citrus clementina HOM05D004759 ORTHO05D005722 4.2e-06 56.6 233 24.0
Eucgr.I01368 Eucalyptus grandis HOM05D004759 ORTHO05D005722 4.2e-06 56.6 228 24.1
Prupe.8G158800 Prunus persica HOM05D004759 ORTHO05D005722 5.4e-06 56.2 229 23.6
Sabra09G0098000 Salix brachista HOM05D004759 ORTHO05D005722 5.4e-06 56.2 229 23.1
Lalb_Chr19g0139561 Lupinus albus HOM05D004759 ORTHO05D005722 9.3e-06 55.5 244 25.4
Nn1g05877 Nelumbo nucifera HOM05D004759 ORTHO05D005722 9.3e-06 55.5 229 24.0


User provided reference genes

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