Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 1.2e-152 543.1 264 100.0
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 1.5e-147 526.2 264 97.0
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 1.5e-147 526.2 264 97.0
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 5.6e-147 524.2 264 96.6
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 2.4e-145 518.8 267 95.5
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 6.2e-138 494.2 268 92.2
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 2.2e-135 485.7 258 90.3
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 1.2e-133 479.9 259 90.0
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 1.1e-131 473.4 260 89.2
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 1.9e-131 472.6 260 89.2
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 1.9e-131 472.6 260 89.2
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 2.5e-131 472.2 260 89.2
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 9.0e-129 463.8 261 86.2
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 1.2e-128 463.4 263 87.5
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 1.5e-128 463.0 261 86.6
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 1.1e-126 456.8 254 87.4
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 3.0e-124 448.7 256 84.8
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 8.7e-124 447.2 253 85.0
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 1.6e-122 443.0 253 84.2
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 2.8e-122 442.2 259 82.6
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 1.4e-121 439.9 253 83.8
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 1.2e-117 426.8 257 79.4
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 5.1e-108 394.8 254 72.8
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 2.2e-106 389.4 269 69.9
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 8.2e-106 387.5 259 71.0
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 1.1e-105 387.1 259 71.0
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 2.4e-105 386.0 261 70.5
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 5.3e-105 384.8 256 71.9
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 1.6e-104 383.3 256 69.9
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 2.6e-104 382.5 256 69.5
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 5.9e-104 381.3 253 70.0
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 5.9e-104 381.3 253 70.4
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 7.7e-104 380.9 275 67.3
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 7.7e-104 380.9 253 70.4
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 1.3e-103 380.2 256 71.5
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 1.7e-103 379.8 257 70.0
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 2.2e-103 379.4 257 70.4
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 3.8e-103 378.6 257 69.6
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 5.0e-103 378.3 258 69.4
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 5.0e-103 378.3 255 69.4
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 5.0e-103 378.3 257 70.8
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 6.5e-103 377.9 257 70.4
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 8.5e-103 377.5 256 69.5
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 8.5e-103 377.5 256 69.5
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 8.5e-103 377.5 257 68.5
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 8.5e-103 377.5 256 69.5
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 1.5e-102 376.7 257 68.1
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 1.9e-102 376.3 257 68.9
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 1.9e-102 376.3 266 67.7
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 5.5e-102 374.8 258 68.6
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 5.5e-102 374.8 259 69.1
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 7.2e-102 374.4 261 68.2
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 9.4e-102 374.0 256 69.1
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 9.4e-102 374.0 256 69.5
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 1.6e-101 373.2 259 68.0
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 2.7e-101 372.5 256 69.1
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 8.0e-101 370.9 256 68.4
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 1.0e-100 370.5 257 68.9
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 2.3e-100 369.4 265 66.8
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 2.3e-100 369.4 258 67.4
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 2.3e-100 369.4 255 69.0
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 3.0e-100 369.0 267 65.5
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 5.2e-100 368.2 256 68.8
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 6.7e-100 367.9 261 67.0
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 6.7e-100 367.9 256 66.8
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 8.8e-100 367.5 257 67.3
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 1.5e-99 366.7 256 68.0
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.5e-99 366.7 256 68.0
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 1.5e-99 366.7 250 69.2
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 2.0e-99 366.3 256 67.6
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 2.0e-99 366.3 254 66.1
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 3.3e-99 365.5 256 68.0
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 3.3e-99 365.5 256 68.4
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 7.5e-99 364.4 256 68.0
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 9.7e-99 364.0 265 66.0
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 1.3e-98 363.6 262 68.3
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 1.7e-98 363.2 259 65.6
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 1.8e-97 359.8 258 66.7
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 1.8e-97 359.8 256 67.2
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 3.1e-97 359.0 255 65.9
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 3.1e-97 359.0 256 65.6
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 4.1e-97 358.6 255 69.4
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 5.3e-97 358.2 255 65.9
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 7.0e-97 357.8 255 65.9
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 7.0e-97 357.8 273 63.0
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 7.7e-96 354.4 256 67.2
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 1.0e-95 354.0 262 64.1
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 1.0e-95 354.0 289 60.9
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 1.7e-95 353.2 265 64.5
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 2.2e-95 352.8 267 62.5
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 2.9e-95 352.4 256 67.2
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 2.9e-95 352.4 261 64.0
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 2.9e-95 352.4 262 64.9
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 5.0e-95 351.7 316 56.3
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 8.5e-95 350.9 263 65.0
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 1.1e-94 350.5 269 62.5
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 2.5e-94 349.4 263 65.4
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 2.5e-94 349.4 262 62.2
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 2.5e-94 349.4 258 66.7
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 3.2e-94 349.0 253 63.2
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 5.5e-94 348.2 256 66.4
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 1.2e-93 347.1 251 65.3
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 3.6e-93 345.5 259 63.7
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 1.0e-92 344.0 254 62.6
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 2.0e-91 339.7 257 63.4
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 9.8e-91 337.4 257 64.6
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 4.8e-90 335.1 259 60.6
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 6.3e-90 334.7 212 72.6
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 6.3e-90 334.7 256 60.9
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 8.3e-90 334.3 258 60.1
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 2.0e-88 329.7 216 71.3
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 2.7e-88 329.3 213 71.8
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 1.3e-87 327.0 237 67.9
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 4.7e-85 318.5 271 56.1
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 6.1e-85 318.2 214 69.6
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 3.4e-83 312.4 211 72.0
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 9.8e-83 310.8 214 67.3
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 1.3e-79 300.4 243 58.0
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 2.3e-79 299.7 236 62.3
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 2.9e-79 299.3 195 72.8
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 1.9e-78 296.6 195 71.8
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 5.2e-76 288.5 195 69.7
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 8.9e-76 287.7 231 56.3
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 4.4e-75 285.4 195 67.7
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 5.7e-75 285.0 204 67.6
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 5.7e-75 285.0 252 54.0
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 2.2e-74 283.1 193 71.0
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 3.7e-74 282.3 251 53.8
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 1.4e-73 280.4 184 72.8
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 2.5e-70 269.6 259 51.7
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 4.0e-68 262.3 308 48.1
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 3.4e-67 259.2 227 58.6
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 5.8e-67 258.5 170 72.9
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 7.8e-64 248.1 368 42.1
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 5.2e-60 235.3 182 63.2
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 9.8e-59 231.1 232 49.1
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 7.8e-56 221.5 133 78.9
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 1.0e-55 221.1 204 53.4
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.5e-54 217.2 270 48.5
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 6.8e-52 208.4 179 55.3
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 7.6e-51 204.9 209 51.7
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 1.9e-46 190.3 178 55.1
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 3.4e-43 179.5 146 58.9
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.8e-42 176.0 124 66.9
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 8.4e-42 174.9 315 34.0
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 3.2e-41 172.9 250 34.4
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.9e-39 166.0 126 63.5
Nitab4.5_0001756g0260 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.0e-35 153.7 104 69.2
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 3.4e-35 152.9 92 72.8
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 5.8e-35 152.1 274 35.0
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 3.9e-31 139.4 192 39.6
SEGI_14482 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 3.9e-31 139.4 97 66.0
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.4e-28 131.0 123 52.8
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 7.6e-27 125.2 165 40.6
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 9.3e-25 118.2 167 43.7
SHI29034 Sapria himalayana HOM05D000105 ORTHO05D000023 2.0e-19 100.5 78 57.7
BcaC05g24583 Brassica carinata HOM05D004412 ORTHO05D005316 2.6e-19 100.1 55 85.5
SMO304G0077 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 5.8e-19 99.0 118 41.5
MD02G1044100 Malus domestica HOM05D004412 ORTHO05D005316 2.2e-18 97.1 52 86.5
MD06G1023300 Malus domestica HOM05D004412 ORTHO05D005316 2.2e-18 97.1 52 86.5
Os01g0931400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 2.5e-14 83.6 83 45.8
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 4.3e-14 82.8 61 65.6
FAN16G1537 Fragaria x ananassa HOM05D004412 ORTHO05D005316 8.2e-13 78.6 72 52.8
CBR_g34733 Chara braunii HOM05D004412 ORTHO05D005316 2.6e-11 73.6 56 53.6
AL4G43830 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 7.2e-09 65.5 36 88.9
Nn1g04358 Nelumbo nucifera HOM05D004412 ORTHO05D005316 1.0e-07 61.6 40 62.5
Duzib133G1297 Durio zibethinus HOM05D004412 ORTHO05D005316 5.7e-06 55.8 34 64.7


User provided reference genes

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