Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p29430 Brassica napus HOM05D004247 ORTHO05D004994 8.0e-83 310.5 166 100.0
BraA08t34878Z Brassica rapa HOM05D004247 ORTHO05D004994 8.0e-83 310.5 166 100.0
BcaC07g39030 Brassica carinata HOM05D004247 ORTHO05D004994 1.5e-81 306.2 166 98.2
BcaB03g12872 Brassica carinata HOM05D004247 ORTHO05D004994 7.5e-81 303.9 167 97.6
C08p20070 Brassica napus HOM05D004247 ORTHO05D004994 1.3e-80 303.1 166 97.6
BolC8t49642H Brassica oleracea HOM05D004247 ORTHO05D004994 3.7e-80 301.6 163 98.2
A06p16430 Brassica napus HOM05D004247 ORTHO05D004994 2.7e-78 295.4 167 95.8
BraA06t24747Z Brassica rapa HOM05D004247 ORTHO05D004994 2.7e-78 295.4 167 95.8
BcaB07g32038 Brassica carinata HOM05D004247 ORTHO05D004994 3.5e-78 295.0 168 94.6
BcaC05g25945 Brassica carinata HOM05D004247 ORTHO05D004994 2.3e-77 292.4 169 94.1
C05p18970 Brassica napus HOM05D004247 ORTHO05D004994 2.3e-77 292.4 169 94.1
BolC5t30597H Brassica oleracea HOM05D004247 ORTHO05D004994 2.3e-77 292.4 169 94.1
Sp1g18060 Schrenkiella parvula HOM05D004247 ORTHO05D004994 6.6e-77 290.8 168 93.5
Thhalv10008749m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 5.6e-76 287.7 168 91.7
BolC7t42849H Brassica oleracea HOM05D004247 ORTHO05D004994 1.2e-75 286.6 168 92.3
BcaNung03373 Brassica carinata HOM05D004247 ORTHO05D004994 2.1e-75 285.8 168 91.7
C07p23120 Brassica napus HOM05D004247 ORTHO05D004994 2.1e-75 285.8 168 91.7
A07p15730 Brassica napus HOM05D004247 ORTHO05D004994 3.6e-75 285.0 168 91.1
A07p15830 Brassica napus HOM05D004247 ORTHO05D004994 3.6e-75 285.0 168 91.1
BraA07t29309Z Brassica rapa HOM05D004247 ORTHO05D004994 3.6e-75 285.0 168 91.1
CARHR020810 Cardamine hirsuta HOM05D004247 ORTHO05D004994 1.0e-69 266.9 169 84.0
AL1G33170 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 1.7e-69 266.2 168 84.5
Carub.0001s1985 Capsella rubella HOM05D004247 ORTHO05D004994 1.7e-69 266.2 168 86.3
AT1G20340 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 3.0e-69 265.4 168 84.5
THA.LOC104813771 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 7.5e-65 250.8 169 78.7
BcaC08g47103 Brassica carinata HOM05D004247 ORTHO05D004994 1.3e-64 250.0 170 78.8
BraA07t31695Z Brassica rapa HOM05D004247 ORTHO05D004994 6.4e-64 247.7 171 77.8
BcaC08g47292 Brassica carinata HOM05D004247 ORTHO05D004994 8.3e-64 247.3 171 77.8
BolC6t40043H Brassica oleracea HOM05D004247 ORTHO05D004994 8.3e-64 247.3 171 77.8
C06p50040 Brassica napus HOM05D004247 ORTHO05D004994 1.1e-63 246.9 171 77.8
A07p41660 Brassica napus HOM05D004247 ORTHO05D004994 1.4e-63 246.5 171 77.2
Aa31LG7G4700 Aethionema arabicum HOM05D004247 ORTHO05D004994 4.1e-63 245.0 168 78.6
Sp5g31220 Schrenkiella parvula HOM05D004247 ORTHO05D004994 1.2e-62 243.4 170 77.1
Thhalv10019237m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 7.8e-62 240.7 167 79.0
CsaV3_3G046150 Cucumis sativus L. HOM05D004247 ORTHO05D004994 3.0e-61 238.8 167 75.4
AT1G76100 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 6.6e-61 237.7 172 75.0
MELO3C003725.2 Cucumis melo HOM05D004247 ORTHO05D004994 6.6e-61 237.7 167 75.4
THA.LOC104809663 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 6.6e-61 237.7 171 76.6
AL2G36140 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 2.5e-60 235.7 172 74.4
CARHR069640 Cardamine hirsuta HOM05D004247 ORTHO05D004994 3.3e-60 235.3 172 75.6
Aa31LG4G6220 Aethionema arabicum HOM05D004247 ORTHO05D004994 1.6e-59 233.0 164 75.6
ClCG05G015390 Citrullus lanatus HOM05D004247 ORTHO05D004994 4.7e-59 231.5 168 72.6
Lj4P802T100 Lonicera japonica HOM05D004247 ORTHO05D004994 8.1e-59 230.7 167 71.9
TWI56G0334 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 1.8e-58 229.6 167 73.7
Glyma.04G020300 Glycine max HOM05D004247 ORTHO05D004994 2.4e-58 229.2 166 72.9
COL.COLO4_26078 Corchorus olitorius HOM05D004247 ORTHO05D004994 3.1e-58 228.8 168 73.2
Ah.04g150590 Amaranthus hybridus HOM05D004247 ORTHO05D004994 1.5e-57 226.5 169 71.6
Lj1g0015317 Lotus japonicus HOM05D004247 ORTHO05D004994 3.4e-57 225.3 168 72.0
MD15G1006300 Malus domestica HOM05D004247 ORTHO05D004994 3.4e-57 225.3 167 72.5
Medtr3g114850 Medicago truncatula HOM05D004247 ORTHO05D004994 4.4e-57 224.9 168 70.2
CiPaw.08G069600 Carya illinoinensis HOM05D004247 ORTHO05D004994 9.9e-57 223.8 167 71.3
Haze_22717 Corylus avellana HOM05D004247 ORTHO05D004994 9.9e-57 223.8 167 71.3
Ca_15453_v3 Cicer arietinum L. HOM05D004247 ORTHO05D004994 2.2e-56 222.6 168 70.2
Gohir.D05G185400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 2.2e-56 222.6 168 70.8
Gorai.009G190800 Gossypium raimondii HOM05D004247 ORTHO05D004994 2.2e-56 222.6 168 70.8
Cpa.g.sc26.256 Carica papaya HOM05D004247 ORTHO05D004994 2.9e-56 222.2 169 71.0
Lj4C16T12 Lonicera japonica HOM05D004247 ORTHO05D004994 2.9e-56 222.2 169 68.0
Cfa014015 Carpinus fangiana HOM05D004247 ORTHO05D004994 4.9e-56 221.5 167 71.3
Glyma.06G020400 Glycine max HOM05D004247 ORTHO05D004994 4.9e-56 221.5 169 72.8
Thecc.08G052400 Theobroma cacao HOM05D004247 ORTHO05D004994 4.9e-56 221.5 168 70.2
TPR.G38114 Trifolium pratense HOM05D004247 ORTHO05D004994 4.9e-56 221.5 168 69.0
Gohir.A05G182400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 6.4e-56 221.1 168 70.8
Lalb_Chr03g0033581 Lupinus albus HOM05D004247 ORTHO05D004994 6.4e-56 221.1 167 71.3
Sabra05G0190200 Salix brachista HOM05D004247 ORTHO05D004994 6.4e-56 221.1 169 69.2
arahy.Tifrunner.gnm1.ann1.X4SEKR Arachis hypogaea HOM05D004247 ORTHO05D004994 1.1e-55 220.3 171 71.9
Nitab4.5_0007524g0020 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.1e-55 220.3 168 72.0
Potri.005G246100 Populus trichocarpa HOM05D004247 ORTHO05D004994 1.1e-55 220.3 169 69.8
Lalb_Chr01g0008481 Lupinus albus HOM05D004247 ORTHO05D004994 1.4e-55 219.9 169 68.0
arahy.Tifrunner.gnm1.ann1.X5CP5W Arachis hypogaea HOM05D004247 ORTHO05D004994 2.4e-55 219.2 171 71.3
Sed0002819 Sechium edule HOM05D004247 ORTHO05D004994 2.4e-55 219.2 167 70.7
VMungo1309G1934 Vigna mungo HOM05D004247 ORTHO05D004994 2.4e-55 219.2 167 70.1
GSVIVG01008733001 Vitis vinifera HOM05D004247 ORTHO05D004994 3.2e-55 218.8 169 69.8
Duzib116G0390 Durio zibethinus HOM05D004247 ORTHO05D004994 4.2e-55 218.4 168 69.0
MD08G1007200 Malus domestica HOM05D004247 ORTHO05D004994 4.2e-55 218.4 167 70.7
PSO675G9160 Papaver somniferum HOM05D004247 ORTHO05D004994 5.4e-55 218.0 166 66.9
Psat5g011080 Pisum sativum HOM05D004247 ORTHO05D004994 5.4e-55 218.0 169 69.2
TAR381G1019 Trochodendron aralioides HOM05D004247 ORTHO05D004994 5.4e-55 218.0 167 70.1
Peaxi162Scf00174g00103 Petunia axillaris HOM05D004247 ORTHO05D004994 9.3e-55 217.2 168 69.0
Nitab4.5_0001936g0030 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.2e-54 216.9 168 70.8
QL02p013016 Quercus lobata HOM05D004247 ORTHO05D004994 1.2e-54 216.9 167 68.9
PSO541G1800 Papaver somniferum HOM05D004247 ORTHO05D004994 1.6e-54 216.5 166 66.3
FAN15G0804 Fragaria x ananassa HOM05D004247 ORTHO05D004994 2.1e-54 216.1 169 68.6
FAN20G0823 Fragaria x ananassa HOM05D004247 ORTHO05D004994 2.7e-54 215.7 169 68.0
Phvul.009G020300 Phaseolus vulgaris HOM05D004247 ORTHO05D004994 2.7e-54 215.7 168 69.0
RcHm_v2.0_Chr6g0303721 Rosa chinensis HOM05D004247 ORTHO05D004994 2.7e-54 215.7 167 69.5
CiPaw.07G143100 Carya illinoinensis HOM05D004247 ORTHO05D004994 4.6e-54 214.9 167 67.7
Hma1.2p1_2322F.1_g319850 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 7.8e-54 214.2 169 68.0
MBI08_g05719_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 7.8e-54 214.2 162 69.1
Sabra02G0012900 Salix brachista HOM05D004247 ORTHO05D004994 7.8e-54 214.2 167 67.7
ECA232G0296 Erigeron canadensis HOM05D004247 ORTHO05D004994 1.0e-53 213.8 168 70.8
FvH4_2g37890 Fragaria vesca HOM05D004247 ORTHO05D004994 1.0e-53 213.8 169 67.5
Manes.05G142000 Manihot esculenta HOM05D004247 ORTHO05D004994 1.0e-53 213.8 170 67.1
CANSAT25G3567 Cannabis sativa HOM05D004247 ORTHO05D004994 1.3e-53 213.4 172 68.0
Potri.002G016000 Populus trichocarpa HOM05D004247 ORTHO05D004994 1.3e-53 213.4 169 66.9
TAR625G1162 Trochodendron aralioides HOM05D004247 ORTHO05D004994 1.3e-53 213.4 167 68.3
Migut.N03188 Erythranthe guttata HOM05D004247 ORTHO05D004994 1.7e-53 213.0 170 67.6
FAN27G2657 Fragaria x ananassa HOM05D004247 ORTHO05D004994 1.7e-53 213.0 169 67.5
Cc10_g01080 Coffea canephora HOM05D004247 ORTHO05D004994 2.3e-53 212.6 169 69.2
SGA_v2.0_scaffold19G08591 Striga asiatica HOM05D004247 ORTHO05D004994 2.3e-53 212.6 164 70.1
Nitab4.5_0003030g0010 Nicotiana tabacum HOM05D004247 ORTHO05D004994 3.0e-53 212.2 170 68.8
Sed0013890 Sechium edule HOM05D004247 ORTHO05D004994 3.9e-53 211.8 168 69.6
Prupe.1G358900 Prunus persica HOM05D004247 ORTHO05D004994 5.1e-53 211.5 167 67.1
Lalb_Chr19g0131621 Lupinus albus HOM05D004247 ORTHO05D004994 6.6e-53 211.1 167 67.1
CSS0046333 Camellia sinensis var. sinensis HOM05D004247 ORTHO05D004994 8.7e-53 210.7 171 69.6
Hma1.2p1_3012F.1_g331630 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 8.7e-53 210.7 169 66.9
Ciclev10002698m.g Citrus clementina HOM05D004247 ORTHO05D004994 1.1e-52 210.3 169 66.3
Sc26g0004480 Simmondsia chinensis HOM05D004247 ORTHO05D004994 1.5e-52 209.9 171 66.7
SalBow6G1848 Salvia bowleyana HOM05D004247 ORTHO05D004994 4.3e-52 208.4 169 65.1
Aqoxy6G01936 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 5.6e-52 208.0 167 65.3
MBI05_g34744_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 5.6e-52 208.0 163 67.5
ATR0661G060 Amborella trichopoda HOM05D004247 ORTHO05D004994 7.3e-52 207.6 168 67.3
Lsat_1_v5_gn_0_680 Lactuca sativa HOM05D004247 ORTHO05D004994 9.6e-52 207.2 169 65.1
HanXRQChr05g0146621 Helianthus annuus HOM05D004247 ORTHO05D004994 1.3e-51 206.8 168 68.5
Dinv31897 Davidia involucrata HOM05D004247 ORTHO05D004994 1.6e-51 206.5 161 67.7
CAN.G311.79 Capsicum annuum HOM05D004247 ORTHO05D004994 2.1e-51 206.1 168 67.9
Actinidia37957 Actinidia chinensis HOM05D004247 ORTHO05D004994 3.6e-51 205.3 166 66.3
PGR031G2466 Punica granatum HOM05D004247 ORTHO05D004994 4.8e-51 204.9 171 67.8
Aqoxy6G01937 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 1.1e-50 203.8 171 67.3
Lsat_1_v5_gn_8_28601 Lactuca sativa HOM05D004247 ORTHO05D004994 2.4e-50 202.6 168 64.9
Rhsim07G0251400 Rhododendron simsii HOM05D004247 ORTHO05D004994 4.0e-50 201.8 169 64.5
Hma1.2p1_0023F.1_g015810 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 9.0e-50 200.7 173 66.5
Rhsim06G0011800 Rhododendron simsii HOM05D004247 ORTHO05D004994 4.4e-49 198.4 167 62.9
TWI12G1003 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 5.8e-49 198.0 153 70.6
CDE02G3101 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 9.9e-49 197.2 163 62.6
Oeu051143.1 Olea europaea HOM05D004247 ORTHO05D004994 9.9e-49 197.2 168 66.1
Oeu021483.1 Olea europaea HOM05D004247 ORTHO05D004994 1.3e-48 196.8 169 63.9
Oeu027609.1 Olea europaea HOM05D004247 ORTHO05D004994 2.9e-48 195.7 168 65.5
EL10Ac1g02063 Beta vulgaris HOM05D004247 ORTHO05D004994 1.4e-47 193.4 161 66.5
Migut.C00904 Erythranthe guttata HOM05D004247 ORTHO05D004994 1.4e-47 193.4 169 64.5
CDE04G1887 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 1.9e-47 193.0 156 65.4
unitig_899.g15551 Utricularia gibba HOM05D004247 ORTHO05D004994 2.4e-47 192.6 170 64.1
ECA233G0125 Erigeron canadensis HOM05D004247 ORTHO05D004994 9.3e-47 190.7 162 63.0
Solyc04g082010.1 Solanum lycopersicum HOM05D004247 ORTHO05D004994 2.7e-46 189.1 171 61.4
Sopen04g035660 Solanum pennellii HOM05D004247 ORTHO05D004994 2.7e-46 189.1 171 61.4
DCAR_013894 Daucus carota HOM05D004247 ORTHO05D004994 6.0e-46 188.0 167 61.7
ECA232G3771 Erigeron canadensis HOM05D004247 ORTHO05D004994 6.0e-46 188.0 169 62.1
PGSC0003DMG400041620 Solanum tuberosum HOM05D004247 ORTHO05D004994 1.7e-45 186.4 171 61.4
Zm00001eb268360 Zea mays HOM05D004247 ORTHO05D004994 5.6e-44 181.4 167 63.5
AUR62013862 Chenopodium quinoa HOM05D004247 ORTHO05D004994 4.8e-43 178.3 102 81.4
Zm00001eb379570 Zea mays HOM05D004247 ORTHO05D004994 6.2e-43 177.9 168 61.9
AUR62036731 Chenopodium quinoa HOM05D004247 ORTHO05D004994 3.1e-42 175.6 102 80.4
Os06g0101600 Oryza sativa ssp. japonica HOM05D004247 ORTHO05D004994 1.7e-40 169.9 167 61.7
Dinv39560 Davidia involucrata HOM05D004247 ORTHO05D004994 9.3e-39 164.1 99 75.8
Nn6g31900 Nelumbo nucifera HOM05D004247 ORTHO05D004994 9.3e-39 164.1 143 65.7
SEGI_02730 Sequoiadendron giganteum HOM05D004247 ORTHO05D004994 9.3e-39 164.1 176 53.4
TPR.G8442 Trifolium pratense HOM05D004247 ORTHO05D004994 2.7e-38 162.5 100 75.0
Sc02g0008920 Simmondsia chinensis HOM05D004247 ORTHO05D004994 5.3e-34 148.3 145 58.6
AagrBONN_evm.TU.Sc2ySwM_228.703 Anthoceros agrestis HOM05D004247 ORTHO05D004994 2.2e-32 142.9 175 49.7
HPP92_015000 Vanilla planifolia HOM05D004247 ORTHO05D004994 8.4e-32 141.0 217 43.3
Pp3c21_4230 Physcomitrium patens HOM05D004247 ORTHO05D004994 1.4e-31 140.2 171 48.0
Pp3c19_21160 Physcomitrium patens HOM05D004247 ORTHO05D004994 1.2e-30 137.1 171 45.6
SMO351G0102 Selaginella moellendorffii HOM05D004247 ORTHO05D004994 3.3e-28 129.0 174 43.7
Pp3c18_13090 Physcomitrium patens HOM05D004247 ORTHO05D004994 5.7e-28 128.3 171 43.3
Cre03.g182551 Chlamydomonas reinhardtii HOM05D004247 ORTHO05D004994 7.4e-28 127.9 147 53.7
PRCOL_00002380 Prasinoderma coloniale HOM05D004247 ORTHO05D004994 2.8e-27 125.9 117 57.3
Nitab4.5_0006806g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.0e-25 119.8 70 78.6
MCO15G475 Micromonas commoda HOM05D004247 ORTHO05D004994 7.6e-25 117.9 117 51.3
Nitab4.5_0001476g0060 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.3e-24 117.1 70 77.1
CBR_g18572 Chara braunii HOM05D004247 ORTHO05D004994 1.4e-23 113.6 173 45.1
Mapoly0080s0027 Marchantia polymorpha HOM05D004247 ORTHO05D004994 4.2e-23 112.1 167 42.5
Atru.chr13.210 Acer truncatum HOM05D004247 ORTHO05D004994 6.3e-19 98.2 179 43.0
Nitab4.5_0002353g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.4e-18 97.1 67 70.1
Nitab4.5_0000498g0120 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.5e-15 86.3 67 59.7
Cc01_g01320 Coffea canephora HOM05D004247 ORTHO05D004994 3.9e-13 79.0 44 79.5


User provided reference genes

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