Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p26070 Brassica napus HOM05D001879 ORTHO05D007957 0.0e+00 1494.9 867 100.0
BraA08t34557Z Brassica rapa HOM05D001879 ORTHO05D007957 0.0e+00 1477.2 782 99.2
BolC3t19706H Brassica oleracea HOM05D001879 ORTHO05D007957 0.0e+00 1389.8 789 92.5
C03p74580 Brassica napus HOM05D001879 ORTHO05D007957 0.0e+00 1380.2 789 92.1
BcaC01g01572 Brassica carinata HOM05D001879 ORTHO05D007957 0.0e+00 1310.4 789 88.8
Sp1g23990 Schrenkiella parvula HOM05D001879 ORTHO05D007957 0.0e+00 1308.5 790 87.8
Thhalv10006764m.g Eutrema salsugineum HOM05D001879 ORTHO05D007957 0.0e+00 1307.0 790 87.2
AT1G27752 Arabidopsis thaliana HOM05D001879 ORTHO05D007957 0.0e+00 1281.5 794 86.5
AL1G41290 Arabidopsis lyrata HOM05D001879 ORTHO05D007957 0.0e+00 1279.6 792 86.2
Carub.0001s2627 Capsella rubella HOM05D001879 ORTHO05D007957 0.0e+00 1258.8 786 85.1
Aa31sc113G40 Aethionema arabicum HOM05D001879 ORTHO05D007957 0.0e+00 1171.0 807 78.1
THA.LOC104820515 Tarenaya hassleriana HOM05D001879 ORTHO05D007957 2.9e-309 1065.1 800 71.5
THA.LOC104812592 Tarenaya hassleriana HOM05D001879 ORTHO05D007957 7.9e-299 1030.4 811 69.4
CARHR027270 Cardamine hirsuta HOM05D001879 ORTHO05D007957 7.2e-268 927.5 573 85.5
Cfa013682 Carpinus fangiana HOM05D001879 ORTHO05D007957 2.7e-238 829.3 814 56.5
Gohir.A01G122900 Gossypium hirsutum HOM05D001879 ORTHO05D007957 1.0e-237 827.4 809 55.9
Gohir.D01G110700 Gossypium hirsutum HOM05D001879 ORTHO05D007957 1.7e-237 826.6 812 56.7
Potri.014G016900 Populus trichocarpa HOM05D001879 ORTHO05D007957 1.7e-237 826.6 797 58.2
Manes.05G181300 Manihot esculenta HOM05D001879 ORTHO05D007957 3.9e-237 825.5 799 57.7
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 5.1e-237 825.1 787 57.9
Gorai.002G135500 Gossypium raimondii HOM05D001879 ORTHO05D007957 8.6e-237 824.3 800 56.8
Dinv44961 Davidia involucrata HOM05D001879 ORTHO05D007957 1.1e-236 823.9 795 58.1
Sabra14G0010700 Salix brachista HOM05D001879 ORTHO05D007957 1.1e-236 823.9 808 57.2
TWI56G1363 Tripterygium wilfordii HOM05D001879 ORTHO05D007957 1.5e-236 823.5 811 57.6
QL12p037915 Quercus lobata HOM05D001879 ORTHO05D007957 6.8e-234 814.7 805 56.6
MD15G1071100 Malus domestica HOM05D001879 ORTHO05D007957 9.9e-233 810.8 805 57.5
MD08G1085900 Malus domestica HOM05D001879 ORTHO05D007957 2.9e-232 809.3 808 56.8
Cpa.g.sc142.17 Carica papaya HOM05D001879 ORTHO05D007957 1.1e-231 807.4 804 56.8
Actinidia08249 Actinidia chinensis HOM05D001879 ORTHO05D007957 1.9e-231 806.6 791 57.8
GSVIVG01009355001 Vitis vinifera HOM05D001879 ORTHO05D007957 9.3e-231 804.3 803 56.9
Hma1.2p1_0210F.1_g089520 Hydrangea macrophylla HOM05D001879 ORTHO05D007957 1.3e-229 800.4 793 56.9
RcHm_v2.0_Chr6g0309461 Rosa chinensis HOM05D001879 ORTHO05D007957 1.9e-228 796.6 801 55.7
Actinidia38101 Actinidia chinensis HOM05D001879 ORTHO05D007957 3.3e-228 795.8 781 56.5
CANSAT11G0135 Cannabis sativa HOM05D001879 ORTHO05D007957 6.2e-227 791.6 803 56.2
FvH4_2g33210 Fragaria vesca HOM05D001879 ORTHO05D007957 8.1e-227 791.2 798 56.1
arahy.Tifrunner.gnm1.ann1.D4I9HU Arachis hypogaea HOM05D001879 ORTHO05D007957 2.4e-226 789.6 786 54.7
CAN.G724.12 Capsicum annuum HOM05D001879 ORTHO05D007957 6.9e-226 788.1 802 55.2
arahy.Tifrunner.gnm1.ann1.0Z12M9 Arachis hypogaea HOM05D001879 ORTHO05D007957 1.5e-225 786.9 774 55.3
FAN27G1994 Fragaria x ananassa HOM05D001879 ORTHO05D007957 2.0e-225 786.6 797 55.5
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 4.9e-224 781.9 794 55.0
FAN20G0243 Fragaria x ananassa HOM05D001879 ORTHO05D007957 4.9e-224 781.9 795 55.0
CiPaw.07G175800 Carya illinoinensis HOM05D001879 ORTHO05D007957 4.2e-223 778.9 808 54.1
Nitab4.5_0003803g0010 Nicotiana tabacum HOM05D001879 ORTHO05D007957 3.5e-222 775.8 805 54.5
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 4.6e-222 775.4 792 54.7
FAN15G2911 Fragaria x ananassa HOM05D001879 ORTHO05D007957 4.6e-222 775.4 799 54.9
Glyma.04G045100 Glycine max HOM05D001879 ORTHO05D007957 4.6e-222 775.4 711 57.1
CsaV3_4G035000 Cucumis sativus L. HOM05D001879 ORTHO05D007957 2.3e-221 773.1 793 55.0
Lj4A759G42 Lonicera japonica HOM05D001879 ORTHO05D007957 1.1e-220 770.8 791 55.2
Eucgr.F02257 Eucalyptus grandis HOM05D001879 ORTHO05D007957 4.3e-220 768.8 804 55.1
Nitab4.5_0000164g0140 Nicotiana tabacum HOM05D001879 ORTHO05D007957 2.8e-219 766.1 802 54.5
FAN24G3463 Fragaria x ananassa HOM05D001879 ORTHO05D007957 3.1e-218 762.7 845 52.9
Solyc04g077930.4 Solanum lycopersicum HOM05D001879 ORTHO05D007957 5.3e-218 761.9 804 53.9
Lj1g0023876 Lotus japonicus HOM05D001879 ORTHO05D007957 1.2e-217 760.8 781 55.2
AUR62037429 Chenopodium quinoa HOM05D001879 ORTHO05D007957 1.5e-217 760.4 798 53.1
Phvul.009G071000 Phaseolus vulgaris HOM05D001879 ORTHO05D007957 3.4e-217 759.2 778 54.5
Sopen04g031530 Solanum pennellii HOM05D001879 ORTHO05D007957 3.4e-217 759.2 804 53.6
VMungo1309G0716 Vigna mungo HOM05D001879 ORTHO05D007957 1.3e-216 757.3 768 54.2
Cc10_g05700 Coffea canephora HOM05D001879 ORTHO05D007957 1.7e-216 756.9 821 52.7
Lalb_Chr11g0062861 Lupinus albus HOM05D001879 ORTHO05D007957 2.2e-216 756.5 773 55.0
Glyma.06G045600 Glycine max HOM05D001879 ORTHO05D007957 9.3e-215 751.1 793 53.6
Migut.N02775 Erythranthe guttata HOM05D001879 ORTHO05D007957 1.2e-214 750.7 792 54.2
Ca_15906_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007957 4.6e-214 748.8 766 54.6
ClCG05G020560 Citrullus lanatus HOM05D001879 ORTHO05D007957 4.6e-214 748.8 819 53.0
Prupe.1G423800 Prunus persica HOM05D001879 ORTHO05D007957 8.7e-213 744.6 795 54.3
Hund05306 Selenicereus undatus HOM05D001879 ORTHO05D007957 1.9e-212 743.4 859 51.5
EL10Ac1g02390 Beta vulgaris HOM05D001879 ORTHO05D007957 4.3e-212 742.3 807 52.4
Sc26g0004180 Simmondsia chinensis HOM05D001879 ORTHO05D007957 9.6e-212 741.1 785 54.5
Psat0s3943g0040 Pisum sativum HOM05D001879 ORTHO05D007957 2.1e-211 740.0 782 54.0
HanXRQChr01g0027941 Helianthus annuus HOM05D001879 ORTHO05D007957 6.2e-211 738.4 766 53.4
vmacro22058 Vaccinium macrocarpon HOM05D001879 ORTHO05D007957 9.0e-210 734.6 893 49.5
Aqoxy6G02668 Aquilegia oxysepala HOM05D001879 ORTHO05D007957 1.2e-209 734.2 751 53.8
Oeu057374.1 Olea europaea HOM05D001879 ORTHO05D007957 4.5e-209 732.3 807 52.4
Medtr3g103040 Medicago truncatula HOM05D001879 ORTHO05D007957 5.8e-209 731.9 799 53.8
AUR62038791 Chenopodium quinoa HOM05D001879 ORTHO05D007957 7.6e-209 731.5 795 51.9
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 2.5e-207 726.5 793 51.2
SGA_v2.0_scaffold152G36803 Striga asiatica HOM05D001879 ORTHO05D007957 1.6e-206 723.8 797 53.2
SalBow6G3417 Salvia bowleyana HOM05D001879 ORTHO05D007957 2.1e-206 723.4 796 53.3
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 3.4e-201 706.1 771 52.7
PSO675G4263 Papaver somniferum HOM05D001879 ORTHO05D007957 7.1e-199 698.4 801 51.4
PSO541G1802 Papaver somniferum HOM05D001879 ORTHO05D007957 6.1e-198 695.3 801 50.6
TPR.G33684 Trifolium pratense HOM05D001879 ORTHO05D007957 1.8e-197 693.7 780 52.6
Nn1g04585 Nelumbo nucifera HOM05D001879 ORTHO05D007957 9.7e-196 688.0 808 51.9
CDE02G0795 Ceratophyllum demersum HOM05D001879 ORTHO05D007957 2.2e-195 686.8 724 53.7
ECA246G2822 Erigeron canadensis HOM05D001879 ORTHO05D007957 1.4e-194 684.1 720 52.2
SalBow8G5177 Salvia bowleyana HOM05D001879 ORTHO05D007957 2.6e-180 636.7 779 49.2
ATR0208G030 Amborella trichopoda HOM05D001879 ORTHO05D007957 3.7e-179 632.9 750 50.0
Os03g0205000 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007957 8.2e-179 631.7 725 50.8
Thecc.08G089900 Theobroma cacao HOM05D001879 ORTHO05D007957 6.5e-168 595.5 599 56.3
Zm00001eb007600 Zea mays HOM05D001879 ORTHO05D007957 6.5e-168 595.5 753 47.7
Sed0020869 Sechium edule HOM05D001879 ORTHO05D007957 8.0e-166 588.6 607 52.6
PGSC0003DMG400021524 Solanum tuberosum HOM05D001879 ORTHO05D007957 1.3e-163 581.3 617 52.5
unitig_578.g16146 Utricularia gibba HOM05D001879 ORTHO05D007957 1.3e-160 571.2 777 45.2
HPP92_009537 Vanilla planifolia HOM05D001879 ORTHO05D007957 2.7e-158 563.5 644 49.5
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 5.7e-156 555.8 442 63.3
Lsat_1_v5_gn_6_112340 Lactuca sativa HOM05D001879 ORTHO05D007957 6.4e-147 525.8 780 42.6
TAR381G0637 Trochodendron aralioides HOM05D001879 ORTHO05D007957 3.6e-142 510.0 478 58.8
CSS0023334 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007957 5.2e-133 479.6 409 59.2
DCAR_009884 Daucus carota HOM05D001879 ORTHO05D007957 9.2e-130 468.8 800 41.1
Peaxi162Scf00081g00176 Petunia axillaris HOM05D001879 ORTHO05D007957 1.9e-122 444.5 502 50.8
Haze_22326 Corylus avellana HOM05D001879 ORTHO05D007957 9.6e-119 432.2 470 51.5
MD03G1160700 Malus domestica HOM05D001879 ORTHO05D007957 2.9e-115 420.6 410 55.4
Mapoly0067s0042 Marchantia polymorpha HOM05D001879 ORTHO05D007957 2.4e-101 374.4 744 35.9
CANSAT25G3038 Cannabis sativa HOM05D001879 ORTHO05D007957 5.7e-87 326.6 222 73.0
Pp3c2_23190 Physcomitrium patens HOM05D001879 ORTHO05D007957 1.8e-85 321.6 670 35.5
AagrBONN_evm.TU.Sc2ySwM_362.2893 Anthoceros agrestis HOM05D001879 ORTHO05D007957 1.6e-81 308.5 647 34.5
SHI08396 Sapria himalayana HOM05D001879 ORTHO05D007957 5.1e-80 303.5 462 41.3
BraA09t40950Z Brassica rapa HOM05D001879 ORTHO05D007957 1.6e-73 282.0 143 96.5
SMO347G0602 Selaginella moellendorffii HOM05D001879 ORTHO05D007957 4.1e-69 267.3 700 31.3
CBR_g57086 Chara braunii HOM05D001879 ORTHO05D007957 6.9e-69 266.5 987 27.1
TAR381G1515 Trochodendron aralioides HOM05D001879 ORTHO05D007957 6.9e-69 266.5 280 55.4
Haze_22325 Corylus avellana HOM05D001879 ORTHO05D007957 2.7e-65 254.6 220 64.5
SEGI_28261 Sequoiadendron giganteum HOM05D001879 ORTHO05D007957 3.0e-56 224.6 284 46.8
SHI08398 Sapria himalayana HOM05D001879 ORTHO05D007957 8.6e-35 153.3 193 45.6
Atru.chr13.821 Acer truncatum HOM05D001879 ORTHO05D007957 2.1e-33 148.7 162 55.6
CSS0041216 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007957 2.4e-21 108.6 119 53.8
HanXRQChr05g0145561 Helianthus annuus HOM05D001879 ORTHO05D007957 1.6e-20 105.9 63 74.6
Cfa000625 Carpinus fangiana HOM05D001879 ORTHO05D007957 8.9e-16 90.1 141 46.1
SHI08400 Sapria himalayana HOM05D001879 ORTHO05D007957 8.9e-16 90.1 94 58.5
C05p26450 Brassica napus HOM05D001879 ORTHO05D007957 2.2e-14 85.5 54 75.9
BolC5t31366H Brassica oleracea HOM05D001879 ORTHO05D007957 2.2e-14 85.5 54 75.9
Cfa010565 Carpinus fangiana HOM05D001879 ORTHO05D007957 5.4e-13 80.9 84 57.1
HPP92_009536 Vanilla planifolia HOM05D001879 ORTHO05D007957 1.6e-12 79.3 143 42.0
MCO02G333 Micromonas commoda HOM05D001879 ORTHO05D007957 2.1e-12 79.0 716 24.2
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 1.7e-11 75.9 42 83.3
Cre13.g568750 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007957 8.1e-09 67.0 54 55.6
AagrBONN_evm.TU.Sc2ySwM_368.1487 Anthoceros agrestis HOM05D001879 ORTHO05D007957 6.8e-08 63.9 72 48.6


User provided reference genes

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