Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 1.4e-184 649.4 322 100.0
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 5.2e-179 630.9 323 96.9
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 2.6e-178 628.6 322 97.8
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 6.4e-161 570.9 323 89.8
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 3.5e-159 565.1 320 89.4
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 2.3e-150 535.8 323 83.6
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 9.6e-141 503.8 324 81.5
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 6.2e-140 501.1 325 80.0
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 1.4e-139 500.0 324 80.6
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 1.2e-138 496.9 322 79.5
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 2.6e-138 495.7 320 80.3
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 4.5e-138 495.0 325 79.4
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 2.5e-128 462.6 327 73.1
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 2.1e-127 459.5 321 73.8
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 4.6e-127 458.4 321 76.3
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 1.1e-115 420.6 317 71.3
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 1.3e-113 413.7 317 70.7
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 1.3e-113 413.7 325 66.8
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 6.5e-113 411.4 292 70.9
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 1.4e-112 410.2 329 66.0
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 4.2e-112 408.7 317 70.0
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 1.6e-111 406.8 291 70.4
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 2.7e-111 406.0 322 65.5
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 4.6e-111 405.2 332 65.1
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 6.1e-111 404.8 291 69.8
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 1.0e-110 404.1 292 69.9
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 1.0e-110 404.1 331 64.7
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 1.4e-110 403.7 327 64.8
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 2.3e-110 402.9 295 69.2
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 3.9e-110 402.1 328 65.5
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 3.9e-110 402.1 299 68.6
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 5.1e-110 401.7 331 64.4
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 8.8e-110 401.0 331 64.4
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 1.1e-109 400.6 325 64.9
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 1.5e-109 400.2 330 65.8
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 2.0e-109 399.8 329 64.4
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 2.5e-109 399.4 290 70.0
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 3.3e-109 399.1 329 63.8
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 5.7e-109 398.3 292 68.2
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 7.4e-109 397.9 290 70.0
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 1.3e-108 397.1 331 63.4
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 2.8e-108 396.0 336 63.4
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 2.8e-108 396.0 296 68.9
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 6.3e-108 394.8 324 64.2
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 8.2e-108 394.4 285 70.2
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 1.4e-107 393.7 288 68.4
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 1.4e-107 393.7 325 63.4
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 1.8e-107 393.3 290 66.9
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 1.8e-107 393.3 318 64.2
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 1.8e-107 393.3 332 62.7
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 4.1e-107 392.1 292 68.5
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 4.1e-107 392.1 291 68.7
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 4.1e-107 392.1 291 67.0
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 5.3e-107 391.7 324 62.7
RcHm_v2.0_Chr4g0428911 Rosa chinensis HOM05D004931 ORTHO05D006579 5.3e-107 391.7 295 68.5
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 6.9e-107 391.3 290 67.2
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 6.9e-107 391.3 294 68.0
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 6.9e-107 391.3 301 66.4
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 2.0e-106 389.8 292 68.5
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 2.0e-106 389.8 329 63.2
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 5.9e-106 388.3 291 67.7
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 7.7e-106 387.9 293 68.3
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 2.2e-105 386.3 291 67.4
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 2.2e-105 386.3 359 59.3
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 2.9e-105 386.0 300 67.3
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 6.5e-105 384.8 339 60.5
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 1.4e-104 383.6 324 62.0
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 1.9e-104 383.3 324 62.0
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 5.5e-104 381.7 330 61.8
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 7.2e-104 381.3 277 70.8
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 1.2e-103 380.6 295 64.7
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 1.2e-103 380.6 314 63.4
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 1.6e-103 380.2 290 66.6
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 1.6e-103 380.2 292 65.4
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 2.1e-103 379.8 282 66.3
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 4.7e-103 378.6 322 61.5
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 1.8e-102 376.7 303 65.3
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 4.4e-101 372.1 334 59.0
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 5.7e-101 371.7 293 62.8
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 7.4e-101 371.3 291 63.9
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 9.7e-101 370.9 332 60.8
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 2.2e-100 369.8 326 58.3
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 2.8e-100 369.4 284 66.5
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 2.4e-99 366.3 331 58.0
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 3.1e-99 365.9 291 62.9
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 1.2e-98 364.0 321 58.3
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 2.6e-98 362.8 294 61.9
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 4.5e-98 362.1 313 64.5
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 5.9e-98 361.7 325 58.5
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 1.0e-97 360.9 294 62.9
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 1.5e-96 357.1 289 61.6
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 1.9e-96 356.7 308 59.7
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 5.5e-96 355.1 344 57.3
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 1.6e-95 353.6 286 61.5
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 4.4e-93 345.5 285 62.1
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 7.0e-91 338.2 287 59.2
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 1.2e-90 337.4 298 59.4
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 4.5e-90 335.5 310 56.8
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 7.2e-88 328.2 314 54.8
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 1.6e-87 327.0 271 62.7
Hund26708 Selenicereus undatus HOM05D004931 ORTHO05D006579 1.6e-87 327.0 282 59.9
Sabra01G0046800 Salix brachista HOM05D004931 ORTHO05D006579 1.8e-86 323.6 274 63.5
CAN.G465.9 Capsicum annuum HOM05D004931 ORTHO05D006579 1.2e-85 320.9 286 58.0
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 5.7e-85 318.5 283 56.5
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 9.8e-85 317.8 311 53.4
AagrBONN_evm.TU.Sc2ySwM_368.2426 Anthoceros agrestis HOM05D004931 ORTHO05D006579 8.3e-84 314.7 270 57.8
MBI07_g35974_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 3.1e-83 312.8 292 55.8
SMO358G0085 Selaginella moellendorffii HOM05D004931 ORTHO05D006579 9.1e-83 311.2 270 57.4
Peaxi162Scf00128g01757 Petunia axillaris HOM05D004931 ORTHO05D006579 2.7e-82 309.7 274 58.0
Pp3c5_2520 Physcomitrium patens HOM05D004931 ORTHO05D006579 5.2e-78 295.4 279 55.2
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 1.2e-77 294.3 233 64.4
AagrBONN_evm.TU.Sc2ySwM_26.3 Anthoceros agrestis HOM05D004931 ORTHO05D006579 1.3e-76 290.8 243 59.3
A07p11470 Brassica napus HOM05D004931 ORTHO05D006579 3.7e-76 289.3 317 54.9
Lalb_Chr15g0090151 Lupinus albus HOM05D004931 ORTHO05D006579 2.4e-75 286.6 227 65.6
Pp3c6_24540 Physcomitrium patens HOM05D004931 ORTHO05D006579 1.6e-74 283.9 271 54.6
MBI10_g42797_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 3.5e-74 282.7 285 52.6
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 7.5e-69 265.0 195 70.8
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 4.9e-68 262.3 241 58.5
BraA07t28936Z Brassica rapa HOM05D004931 ORTHO05D006579 5.9e-66 255.4 271 55.4
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 1.0e-65 254.6 283 50.9
Actinidia31350 Actinidia chinensis HOM05D004931 ORTHO05D006579 5.0e-65 252.3 295 49.8
PSO832G0491 Papaver somniferum HOM05D004931 ORTHO05D006579 1.4e-62 244.2 245 56.7
Cre10.g441500 Chlamydomonas reinhardtii HOM05D004931 ORTHO05D006579 6.0e-50 202.2 291 40.9
Eucgr.B03557 Eucalyptus grandis HOM05D004931 ORTHO05D006579 6.8e-46 188.7 120 74.2
Lalb_Chr18g0060061 Lupinus albus HOM05D004931 ORTHO05D006579 6.8e-46 188.7 133 68.4
Haze_27431 Corylus avellana HOM05D004931 ORTHO05D006579 5.4e-43 179.1 313 37.4
PRCOL_00001027 Prasinoderma coloniale HOM05D004931 ORTHO05D006579 5.6e-40 169.1 300 37.0
PGSC0003DMG402006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 1.6e-39 167.5 120 66.7
PGSC0003DMG401006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 3.4e-37 159.8 117 65.8
RcHm_v2.0_Chr7g0205601 Rosa chinensis HOM05D004931 ORTHO05D006579 8.4e-36 155.2 88 83.0
PSO170G5257 Papaver somniferum HOM05D004650 ORTHO05D005715 1.3e-33 147.9 119 65.5
CBR_g45420 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-33 147.5 131 58.8
BcaB03g12135 Brassica carinata HOM05D004931 ORTHO05D006579 2.4e-30 137.1 70 95.7
TPR.G382 Trifolium pratense HOM05D004931 ORTHO05D006579 6.0e-26 122.5 69 81.2
TPR.G19900 Trifolium pratense HOM05D004931 ORTHO05D006579 2.4e-22 110.5 69 76.8
ECA238G1930 Erigeron canadensis HOM05D000406 ORTHO05D006918 1.2e-21 108.2 75 68.0
Sc17g0004710 Simmondsia chinensis HOM05D004931 ORTHO05D006579 5.8e-21 105.9 110 52.7
Zm00001eb242070 Zea mays HOM05D004931 ORTHO05D037234 9.3e-19 98.6 304 29.3
Os02g0521600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D037234 1.0e-17 95.1 281 27.8
Zm00001eb406040 Zea mays HOM05D004931 ORTHO05D006579 5.1e-17 92.8 311 26.0
Zm00001eb037020 Zea mays HOM05D004931 ORTHO05D006579 6.7e-17 92.4 89 52.8
BolC2t10441H Brassica oleracea HOM05D004931 ORTHO05D027277 1.4e-14 84.7 81 58.0
Cre06.g253755 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D145199 1.2e-13 81.6 343 24.5
TPR.G399 Trifolium pratense HOM05D004931 ORTHO05D006579 2.6e-13 80.5 69 58.0
Cre06.g253459 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D146359 4.5e-13 79.7 343 24.2
Os04g0652600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D299584 7.6e-13 79.0 263 26.6
Lalb_Chr18g0060051 Lupinus albus HOM05D004931 ORTHO05D006579 1.0e-12 78.6 47 76.6
Solyc03g059395.1 Solanum lycopersicum HOM05D004931 ORTHO05D006579 1.7e-12 77.8 51 66.7
C01p27720 Brassica napus HOM05D004931 ORTHO05D027277 3.8e-12 76.6 75 54.7
TPR.G27432 Trifolium pratense HOM05D004931 ORTHO05D006579 6.5e-12 75.9 66 57.6
Zm00001eb406050 Zea mays HOM05D004931 ORTHO05D444756 1.9e-11 74.3 233 26.2
Os02g0513800 Oryza sativa ssp. japonica HOM05D023198 ORTHO05D294263 5.1e-09 66.2 251 24.7
Sopen03g014100 Solanum pennellii HOM05D004931 ORTHO05D006579 3.3e-08 63.5 41 70.7
BcaC03g16580 Brassica carinata HOM05D004931 ORTHO05D027277 5.7e-08 62.8 66 53.0
FAN01G2784 Fragaria x ananassa HOM05D005362 ORTHO05D006895 1.3e-07 61.6 149 32.2


User provided reference genes

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