Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p23330 Brassica napus HOM05D006521 ORTHO05D008087 2.3e-224 781.9 402 100.0
BraA08t34287Z Brassica rapa HOM05D006521 ORTHO05D008087 2.3e-224 781.9 402 100.0
BolC3t20094H Brassica oleracea HOM05D006521 ORTHO05D008087 6.6e-216 753.8 403 95.5
C03p78340 Brassica napus HOM05D006521 ORTHO05D008087 5.6e-215 750.7 403 95.3
CARHR246880 Cardamine hirsuta HOM05D006521 ORTHO05D008087 7.9e-185 650.6 411 80.5
AT4G39820 Arabidopsis thaliana HOM05D006521 ORTHO05D008087 1.5e-183 646.4 411 80.3
AL7G12040 Arabidopsis lyrata HOM05D006521 ORTHO05D008087 2.8e-182 642.1 421 78.9
Carub.0007s0173 Capsella rubella HOM05D006521 ORTHO05D008087 3.1e-181 638.6 419 79.0
Thhalv10025314m.g Eutrema salsugineum HOM05D006521 ORTHO05D008087 9.1e-181 637.1 419 78.0
Sp7g36070 Schrenkiella parvula HOM05D006521 ORTHO05D008087 1.2e-180 636.7 417 79.1
BcaNung05326 Brassica carinata HOM05D006521 ORTHO05D008087 9.4e-178 627.1 344 93.3
Aa31LG6G15450 Aethionema arabicum HOM05D006521 ORTHO05D008087 2.2e-174 615.9 421 75.3
THA.LOC104824871 Tarenaya hassleriana HOM05D006521 ORTHO05D008087 9.8e-159 563.9 403 70.7
THA.LOC104807700 Tarenaya hassleriana HOM05D006521 ORTHO05D008087 6.3e-158 561.2 415 70.6
Cpa.g.sc20.228 Carica papaya HOM05D006521 ORTHO05D008087 2.7e-140 502.7 373 65.4
Duzib147G0857 Durio zibethinus HOM05D006521 ORTHO05D008087 7.3e-138 494.6 357 66.4
arahy.Tifrunner.gnm1.ann1.IK9JFE Arachis hypogaea HOM05D006521 ORTHO05D008087 4.4e-135 485.3 353 66.0
Ca_16545_v3 Cicer arietinum L. HOM05D006521 ORTHO05D008087 2.2e-134 483.0 344 65.4
arahy.Tifrunner.gnm1.ann1.2NAN3W Arachis hypogaea HOM05D006521 ORTHO05D008087 8.3e-134 481.1 353 65.4
Lalb_Chr11g0075241 Lupinus albus HOM05D006521 ORTHO05D008087 8.3e-134 481.1 354 65.3
Gorai.007G061700 Gossypium raimondii HOM05D006521 ORTHO05D008087 1.9e-133 479.9 357 64.4
CANSAT01G1058 Cannabis sativa HOM05D006521 ORTHO05D008087 5.4e-133 478.4 356 64.6
Glyma.18G019200 Glycine max HOM05D006521 ORTHO05D008087 5.4e-133 478.4 345 65.8
Thecc.01G106200 Theobroma cacao HOM05D006521 ORTHO05D008087 7.0e-133 478.0 356 64.9
Atru.chr4.229 Acer truncatum HOM05D006521 ORTHO05D008087 4.6e-132 475.3 353 66.0
Phvul.001G250400 Phaseolus vulgaris HOM05D006521 ORTHO05D008087 4.6e-132 475.3 347 65.7
Lj6g0010661 Lotus japonicus HOM05D006521 ORTHO05D008087 1.0e-131 474.2 341 64.8
Medtr3g087760 Medicago truncatula HOM05D006521 ORTHO05D008087 1.0e-131 474.2 344 64.5
VMungo1383G3636 Vigna mungo HOM05D006521 ORTHO05D008087 2.3e-131 473.0 354 64.4
Manes.12G138400 Manihot esculenta HOM05D006521 ORTHO05D008087 3.0e-131 472.6 369 62.6
Duzib264G0874 Durio zibethinus HOM05D006521 ORTHO05D008087 5.0e-131 471.9 381 61.7
ClCG01G018970 Citrullus lanatus HOM05D006521 ORTHO05D008087 1.5e-130 470.3 355 63.7
MELO3C007776.2 Cucumis melo HOM05D006521 ORTHO05D008087 1.5e-130 470.3 355 63.9
Glyma.11G238100 Glycine max HOM05D006521 ORTHO05D008087 2.5e-130 469.5 346 65.0
TAR376G0467 Trochodendron aralioides HOM05D006521 ORTHO05D008087 5.6e-130 468.4 355 64.5
Gorai.008G103700 Gossypium raimondii HOM05D006521 ORTHO05D008087 7.3e-130 468.0 356 64.0
Prupe.3G102100 Prunus persica HOM05D006521 ORTHO05D008087 9.5e-130 467.6 348 64.1
Psat5g088760 Pisum sativum HOM05D006521 ORTHO05D008087 1.2e-129 467.2 342 64.3
FAN19G2752 Fragaria x ananassa HOM05D006521 ORTHO05D008087 3.6e-129 465.7 363 63.1
Ciclev10025891m.g Citrus clementina HOM05D006521 ORTHO05D008087 6.2e-129 464.9 356 63.5
FvH4_1g21530 Fragaria vesca HOM05D006521 ORTHO05D008087 8.1e-129 464.5 363 63.1
FAN28G0591 Fragaria x ananassa HOM05D006521 ORTHO05D008087 8.1e-129 464.5 363 63.1
CsaV3_6G045650 Cucumis sativus L. HOM05D006521 ORTHO05D008087 1.8e-128 463.4 355 63.4
RcHm_v2.0_Chr2g0115391 Rosa chinensis HOM05D006521 ORTHO05D008087 8.9e-128 461.1 350 63.1
FAN23G2501 Fragaria x ananassa HOM05D006521 ORTHO05D008087 1.5e-127 460.3 363 62.5
TWI74G1358 Tripterygium wilfordii HOM05D006521 ORTHO05D008087 1.5e-127 460.3 354 62.1
Sed0002886 Sechium edule HOM05D006521 ORTHO05D008087 2.6e-127 459.5 382 59.9
TPR.G22881 Trifolium pratense HOM05D006521 ORTHO05D008087 8.3e-126 454.5 372 59.4
Hma1.2p1_0011F.1_g007170 Hydrangea macrophylla HOM05D006521 ORTHO05D008087 1.1e-125 454.1 357 62.7
PGR004G2411 Punica granatum HOM05D006521 ORTHO05D008087 1.4e-125 453.8 353 63.7
Potri.005G079300 Populus trichocarpa HOM05D006521 ORTHO05D008087 9.2e-125 451.1 348 62.4
Sed0013283 Sechium edule HOM05D006521 ORTHO05D008087 9.2e-125 451.1 403 56.3
Eucgr.I00394 Eucalyptus grandis HOM05D006521 ORTHO05D008087 1.2e-124 450.7 356 60.7
Dinv16313 Davidia involucrata HOM05D006521 ORTHO05D008087 1.6e-124 450.3 356 62.9
QL06p050323 Quercus lobata HOM05D006521 ORTHO05D008087 1.6e-124 450.3 347 63.4
Dinv00937 Davidia involucrata HOM05D006521 ORTHO05D008087 6.0e-124 448.4 356 62.6
PSO447G0171 Papaver somniferum HOM05D006521 ORTHO05D008087 1.9e-122 443.4 353 62.6
TWI77G0511 Tripterygium wilfordii HOM05D006521 ORTHO05D008087 5.6e-122 441.8 355 60.0
PSO210G2459 Papaver somniferum HOM05D006521 ORTHO05D008087 4.0e-120 435.6 353 61.8
Aqoxy5G01962 Aquilegia oxysepala HOM05D006521 ORTHO05D008087 8.9e-120 434.5 355 61.1
Sabra05G0065200 Salix brachista HOM05D006521 ORTHO05D004292 7.6e-119 431.4 363 57.9
C01p00850 Brassica napus HOM05D006521 ORTHO05D008087 9.9e-119 431.0 380 63.9
SGA_v2.0_scaffold2G01323 Striga asiatica HOM05D006521 ORTHO05D008087 7.1e-117 424.9 355 60.6
HanXRQChr16g0527921 Helianthus annuus HOM05D006521 ORTHO05D008087 9.2e-117 424.5 352 61.6
Rhsim10G0157900 Rhododendron simsii HOM05D006521 ORTHO05D008087 2.1e-116 423.3 353 58.9
Cc07_g15580 Coffea canephora HOM05D006521 ORTHO05D008087 2.7e-116 422.9 389 56.8
Nitab4.5_0000715g0180 Nicotiana tabacum HOM05D006521 ORTHO05D008087 3.5e-116 422.5 373 58.4
Lsat_1_v5_gn_4_21220 Lactuca sativa HOM05D006521 ORTHO05D008087 1.0e-115 421.0 353 61.8
Sc16g0005450 Simmondsia chinensis HOM05D006521 ORTHO05D008087 1.3e-115 420.6 343 60.3
PGSC0003DMG400021832 Solanum tuberosum HOM05D006521 ORTHO05D008087 3.0e-115 419.5 387 56.8
ECA234G2647 Erigeron canadensis HOM05D006521 ORTHO05D008087 1.1e-114 417.5 353 60.1
SHI11594 Sapria himalayana HOM05D006521 ORTHO05D008087 1.1e-114 417.5 380 54.5
Sopen05g030360 Solanum pennellii HOM05D006521 ORTHO05D008087 1.1e-114 417.5 352 59.7
Solyc05g051840.1 Solanum lycopersicum HOM05D006521 ORTHO05D008087 4.3e-114 415.6 377 57.3
Haze_24978 Corylus avellana HOM05D006521 ORTHO05D008087 7.3e-114 414.8 368 56.5
AUR62002034 Chenopodium quinoa HOM05D006521 ORTHO05D008087 2.8e-113 412.9 337 58.8
AUR62003763 Chenopodium quinoa HOM05D006521 ORTHO05D008087 6.2e-113 411.8 350 57.4
Oeu053565.1 Olea europaea HOM05D006521 ORTHO05D008087 1.8e-112 410.2 365 58.1
Ah.02g122760 Amaranthus hybridus HOM05D006521 ORTHO05D008087 5.2e-112 408.7 349 56.4
CiPaw.03G138700 Carya illinoinensis HOM05D006521 ORTHO05D008087 6.9e-112 408.3 354 57.3
Lsat_1_v5_gn_2_67800 Lactuca sativa HOM05D006521 ORTHO05D008087 2.0e-111 406.8 341 59.8
Migut.H02388 Erythranthe guttata HOM05D006521 ORTHO05D008087 3.4e-111 406.0 356 58.1
CAN.G1494.2 Capsicum annuum HOM05D006521 ORTHO05D008087 4.4e-111 405.6 384 55.2
SalBow3G0008 Salvia bowleyana HOM05D006521 ORTHO05D008087 2.9e-110 402.9 387 56.6
Ah.02g120360 Amaranthus hybridus HOM05D006521 ORTHO05D008087 4.9e-110 402.1 349 55.9
HanXRQChr15g0471711 Helianthus annuus HOM05D006521 ORTHO05D008087 6.4e-110 401.7 337 59.3
HPP92_016137 Vanilla planifolia HOM05D006521 ORTHO05D008087 1.7e-107 393.7 354 58.5
DCAR_011503 Daucus carota HOM05D006521 ORTHO05D008087 8.7e-107 391.3 364 55.8
A01p00740 Brassica napus HOM05D006521 ORTHO05D008087 2.1e-105 386.7 260 78.1
Cfa002704 Carpinus fangiana HOM05D006521 ORTHO05D008087 1.1e-104 384.4 368 52.7
unitig_32.g11814 Utricularia gibba HOM05D006521 ORTHO05D008087 4.0e-104 382.5 353 55.0
Hund13498 Selenicereus undatus HOM05D006521 ORTHO05D008087 2.9e-102 376.3 368 53.0
Nn1g05268 Nelumbo nucifera HOM05D006521 ORTHO05D008087 1.1e-101 374.4 309 59.9
Lj4A881T25 Lonicera japonica HOM05D006521 ORTHO05D008087 7.9e-100 368.2 294 63.3
ATR0789G153 Amborella trichopoda HOM05D006521 ORTHO05D008087 7.4e-98 361.7 473 42.9
Nitab4.5_0005597g0010 Nicotiana tabacum HOM05D006521 ORTHO05D008087 5.3e-96 355.5 372 51.9
CDE10G1235 Ceratophyllum demersum HOM05D006521 ORTHO05D008087 7.6e-95 351.7 354 49.4
Lj4A883T21 Lonicera japonica HOM05D006521 ORTHO05D008087 6.4e-94 348.6 381 49.9
Atru.chr1.3715 Acer truncatum HOM05D006521 ORTHO05D008087 5.6e-90 335.5 351 52.4
COL.COLO4_09911 Corchorus olitorius HOM05D006521 ORTHO05D008087 6.9e-88 328.6 348 50.9
Actinidia36602 Actinidia chinensis HOM05D006521 ORTHO05D008087 1.3e-86 324.3 292 56.5
SEGI_26188 Sequoiadendron giganteum HOM05D006521 ORTHO05D008087 2.5e-77 293.5 554 33.2
AagrBONN_evm.TU.Sc2ySwM_368.767 Anthoceros agrestis HOM05D006521 ORTHO05D008087 5.7e-74 282.3 457 37.2
SMO353G0213 Selaginella moellendorffii HOM05D006521 ORTHO05D008087 9.7e-74 281.6 343 41.4
Os02g0550400 Oryza sativa ssp. japonica HOM05D006521 ORTHO05D008087 3.4e-71 273.1 334 47.6
EL10Ac6g15070 Beta vulgaris HOM05D006521 ORTHO05D008087 9.4e-69 265.0 209 62.7
Pp3c19_5060 Physcomitrium patens HOM05D006521 ORTHO05D008087 3.0e-67 260.0 406 36.5
Pp3c22_3810 Physcomitrium patens HOM05D006521 ORTHO05D008087 8.8e-67 258.5 405 35.6
Mapoly0165s0018 Marchantia polymorpha HOM05D006521 ORTHO05D008087 3.7e-65 253.1 492 33.7
ECA238G1388 Erigeron canadensis HOM05D001700 ORTHO05D002131 2.3e-59 233.8 158 68.4
ECA238G2228 Erigeron canadensis HOM05D006521 ORTHO05D008087 6.7e-59 232.3 156 69.2
Pp3c10_9400 Physcomitrium patens HOM05D006521 ORTHO05D008087 2.0e-58 230.7 379 32.2
Pp3c14_5890 Physcomitrium patens HOM05D006521 ORTHO05D008087 3.5e-55 219.9 379 31.1
Atru.chr1.3697 Acer truncatum HOM05D006521 ORTHO05D008087 5.9e-55 219.2 148 70.9
BcaNung00904 Brassica carinata HOM05D006521 ORTHO05D008087 1.3e-54 218.0 126 89.7
Peaxi162Scf00295g00033 Petunia axillaris HOM05D006521 ORTHO05D008087 7.7e-47 192.2 179 57.0
CBR_g34484 Chara braunii HOM05D006521 ORTHO05D008087 1.9e-37 161.0 248 36.3
HanXRQChr10g0288811 Helianthus annuus HOM05D006521 ORTHO05D008087 5.5e-37 159.5 105 75.2
TAR636G0192 Trochodendron aralioides HOM05D006521 ORTHO05D008087 5.2e-27 126.3 126 54.0
FAN13G3020 Fragaria x ananassa HOM05D005489 ORTHO05D006629 9.8e-26 122.1 105 54.3
PRCOL_00001846 Prasinoderma coloniale HOM05D006521 ORTHO05D008087 7.0e-16 89.4 274 28.8
GSVIVG01022164001 Vitis vinifera HOM05D006521 ORTHO05D008087 3.9e-14 83.6 74 54.1
Atru.chr1.3698 Acer truncatum HOM05D006521 ORTHO05D008087 1.2e-10 72.0 72 52.8
CDE10G1372 Ceratophyllum demersum HOM05D006521 ORTHO05D008087 2.1e-07 61.2 82 42.7


User provided reference genes

Program Settings