Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 1.9e-104 382.5 188 100.0
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 1.9e-104 382.5 188 100.0
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 1.9e-104 382.5 188 100.0
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 3.6e-103 378.3 188 98.9
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 4.6e-103 377.9 188 97.9
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 7.9e-103 377.1 188 98.9
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 7.9e-103 377.1 188 98.4
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 2.3e-102 375.6 188 97.9
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 2.3e-102 375.6 188 97.9
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 2.3e-102 375.6 188 97.9
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 2.3e-102 375.6 188 97.9
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 2.3e-102 375.6 188 97.9
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 5.1e-102 374.4 188 97.3
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 5.1e-102 374.4 188 97.3
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 2.5e-101 372.1 190 97.4
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 2.5e-101 372.1 190 97.4
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 1.6e-100 369.4 188 95.7
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 1.6e-100 369.4 188 94.7
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 2.2e-100 369.0 188 95.2
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 5.3e-99 364.4 188 93.1
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 3.4e-98 361.7 188 94.1
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 2.2e-97 359.0 188 93.1
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 1.4e-96 356.3 188 92.6
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 1.2e-95 353.2 188 94.7
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 1.8e-94 349.4 188 87.8
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 7.4e-93 344.0 188 86.7
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 7.4e-93 344.0 188 86.7
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 9.7e-93 343.6 188 86.7
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 1.7e-92 342.8 188 85.6
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 1.7e-92 342.8 188 85.6
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 1.7e-92 342.8 188 86.7
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.7e-92 342.8 188 86.2
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 2.2e-92 342.4 188 86.2
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 2.2e-92 342.4 188 86.7
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 3.7e-92 341.7 188 85.6
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 6.3e-92 340.9 188 86.2
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 1.1e-91 340.1 188 85.1
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 1.1e-91 340.1 188 85.6
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 1.1e-91 340.1 188 85.1
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 1.8e-91 339.3 188 86.7
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 1.8e-91 339.3 188 86.2
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 2.4e-91 339.0 188 85.6
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 3.1e-91 338.6 188 85.6
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 4.1e-91 338.2 188 84.0
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 6.9e-91 337.4 188 84.6
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 9.1e-91 337.0 188 84.6
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 1.2e-90 336.7 188 86.7
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 1.2e-90 336.7 188 86.2
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 1.5e-90 336.3 187 85.0
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 1.5e-90 336.3 188 86.2
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 2.6e-90 335.5 188 83.5
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 2.6e-90 335.5 188 84.6
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 3.4e-90 335.1 188 83.5
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 5.9e-90 334.3 188 86.2
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 5.9e-90 334.3 188 84.6
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 7.7e-90 334.0 188 84.6
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 1.0e-89 333.6 188 84.0
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 1.7e-89 332.8 188 85.1
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 1.7e-89 332.8 188 85.1
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 2.2e-89 332.4 188 85.1
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 2.2e-89 332.4 188 85.1
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 2.2e-89 332.4 188 83.0
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 2.9e-89 332.0 186 83.9
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 3.8e-89 331.6 186 83.3
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 3.8e-89 331.6 186 83.3
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 5.0e-89 331.3 188 85.1
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 5.0e-89 331.3 188 85.1
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 8.5e-89 330.5 188 84.6
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 8.5e-89 330.5 188 84.6
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 8.5e-89 330.5 188 84.6
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 1.1e-88 330.1 188 84.0
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 1.4e-88 329.7 179 86.0
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 1.9e-88 329.3 186 82.8
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 2.5e-88 328.9 188 83.0
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 2.5e-88 328.9 188 85.6
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 2.5e-88 328.9 186 82.8
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 2.5e-88 328.9 188 81.4
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 2.5e-88 328.9 188 81.4
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 2.5e-88 328.9 188 82.4
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 3.2e-88 328.6 186 82.8
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 9.4e-88 327.0 188 84.0
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 1.2e-87 326.6 188 82.4
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 2.1e-87 325.9 188 84.0
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 2.1e-87 325.9 188 83.0
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 4.7e-87 324.7 188 81.4
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 6.1e-87 324.3 180 86.7
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 80.3
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 6.7e-86 320.9 188 83.0
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 6.7e-86 320.9 188 83.5
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 8.8e-86 320.5 188 80.9
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 8.8e-86 320.5 188 80.9
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 1.1e-85 320.1 188 81.9
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 1.5e-85 319.7 188 80.3
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 7.4e-85 317.4 188 81.9
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 9.7e-85 317.0 188 82.4
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 1.7e-84 316.2 188 80.9
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 2.8e-84 315.5 188 79.3
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 3.7e-84 315.1 188 81.4
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 3.7e-84 315.1 188 81.4
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 3.7e-84 315.1 188 81.4
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 6.3e-84 314.3 188 80.3
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 6.3e-84 314.3 188 80.9
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 8.2e-84 313.9 188 80.3
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 1.4e-83 313.2 188 78.7
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 1.8e-83 312.8 188 79.3
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 3.1e-83 312.0 188 78.7
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 3.1e-83 312.0 188 78.7
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 5.3e-83 311.2 188 78.7
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 1.2e-82 310.1 189 79.9
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 1.2e-82 310.1 188 79.8
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 3.5e-82 308.5 169 85.2
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 5.9e-82 307.8 188 80.3
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 2.2e-81 305.8 189 81.0
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 2.2e-81 305.8 189 81.0
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 8.5e-81 303.9 189 80.4
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.1e-80 303.5 174 82.8
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 1.9e-80 302.8 180 78.3
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 3.2e-80 302.0 188 76.1
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 5.5e-80 301.2 188 77.1
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 1.2e-79 300.1 188 75.5
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 1.6e-79 299.7 188 76.6
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 2.7e-79 298.9 189 79.4
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 4.7e-79 298.1 189 79.4
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 2.3e-78 295.8 177 84.2
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 5.2e-78 294.7 190 76.3
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 8.8e-78 293.9 190 76.3
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 1.7e-76 289.7 188 75.0
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 1.4e-75 286.6 188 74.5
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 6.5e-73 277.7 188 75.0
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 1.5e-72 276.6 179 75.4
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 1.5e-72 276.6 179 74.9
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 7.2e-72 274.2 188 68.1
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 1.2e-71 273.5 188 74.5
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 1.2e-71 273.5 188 71.3
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 1.2e-71 273.5 188 71.3
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 2.1e-71 272.7 188 69.1
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 6.1e-71 271.2 188 69.1
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 8.0e-71 270.8 188 73.4
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 9.8e-69 263.8 189 65.6
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 3.1e-67 258.8 187 65.2
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 5.4e-67 258.1 187 66.3
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 1.7e-65 253.1 181 69.1
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 5.0e-65 251.5 187 63.1
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 1.1e-59 233.8 165 72.7
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 1.4e-59 233.4 188 56.9
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 9.2e-59 230.7 177 62.1
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 1.3e-52 210.3 188 59.6
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 7.3e-48 194.5 121 75.2
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 1.1e-46 190.7 187 50.3
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 1.1e-43 180.6 109 79.8
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 9.2e-43 177.6 115 73.9
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 3.0e-41 172.6 188 52.1
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 3.9e-41 172.2 171 56.1
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 9.5e-40 167.5 123 71.5
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 6.2e-39 164.9 85 91.8
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 1.4e-35 153.7 127 59.8
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 2.4e-30 136.3 78 82.1
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 2.0e-29 133.3 93 75.3
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 1.5e-24 117.1 64 81.2
Prupe.7G008800 Prunus persica HOM05D004362 ORTHO05D334194 7.9e-10 68.2 35 91.4
EL10Ac2g03799 Beta vulgaris HOM05D004362 ORTHO05D090253 2.8e-07 59.7 39 69.2


User provided reference genes

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