Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p08030 Brassica napus HOM05D000867 ORTHO05D042922 5.4e-97 357.8 204 100.0
BolC8t47830H Brassica oleracea HOM05D000867 ORTHO05D042922 1.2e-51 207.2 191 61.8
BcaC07g37510 Brassica carinata HOM05D000867 ORTHO05D000864 1.1e-49 200.7 195 69.2
BraA08t32825Z Brassica rapa HOM05D000867 ORTHO05D000864 7.2e-41 171.4 187 54.5
BcaB08g36726 Brassica carinata HOM05D000867 ORTHO05D000864 7.9e-40 167.9 223 51.6
Sp1g30440 Schrenkiella parvula HOM05D000867 ORTHO05D000864 1.0e-23 114.4 218 48.2
Thhalv10001811m.g Eutrema salsugineum HOM05D000867 ORTHO05D000864 7.0e-20 101.7 222 47.7
AT1G35730 Arabidopsis thaliana HOM05D000867 ORTHO05D000864 9.1e-20 101.3 210 38.1
AT1G35750 Arabidopsis thaliana HOM05D000867 ORTHO05D000864 2.9e-18 96.3 209 35.9
C06p11780 Brassica napus HOM05D000867 ORTHO05D000864 3.2e-17 92.8 212 36.8
Thhalv10009986m.g Eutrema salsugineum HOM05D000867 ORTHO05D000864 2.1e-16 90.1 214 37.9
BcaB07g33150 Brassica carinata HOM05D000867 ORTHO05D000864 4.7e-16 89.0 214 36.4
AL1G50640 Arabidopsis lyrata HOM05D000867 ORTHO05D000864 8.8e-15 84.7 105 49.5
Carub.0001s3348 Capsella rubella HOM05D000867 ORTHO05D000864 2.2e-13 80.1 54 68.5
AL1G50680 Arabidopsis lyrata HOM05D000867 ORTHO05D000864 4.8e-13 79.0 129 38.8
Carub.0001s3349 Capsella rubella HOM05D000867 ORTHO05D000864 6.3e-13 78.6 54 66.7
Aa31LG9G14590 Aethionema arabicum HOM05D000867 ORTHO05D000864 4.1e-12 75.9 56 66.1
CARHR120210 Cardamine hirsuta HOM05D000867 ORTHO05D000864 4.1e-12 75.9 54 66.7
Carub.0006s2733 Capsella rubella HOM05D000867 ORTHO05D000864 9.1e-12 74.7 56 60.7
A10p17810 Brassica napus HOM05D000867 ORTHO05D000864 1.2e-11 74.3 51 66.7
BraA10t43859Z Brassica rapa HOM05D000867 ORTHO05D000864 1.6e-11 73.9 51 66.7
Thhalv10028569m.g Eutrema salsugineum HOM05D000867 ORTHO05D000864 3.5e-11 72.8 111 38.7
THA.LOC104825188 Tarenaya hassleriana HOM05D000867 ORTHO05D000864 4.5e-11 72.4 62 50.0
CARHR259790 Cardamine hirsuta HOM05D000867 ORTHO05D000864 7.7e-11 71.6 56 58.9
A09p32260 Brassica napus HOM05D000867 ORTHO05D000864 1.0e-10 71.2 56 64.3
BraA09t38770Z Brassica rapa HOM05D000867 ORTHO05D000864 1.0e-10 71.2 56 64.3
BolC9t58207H Brassica oleracea HOM05D000867 ORTHO05D000864 1.3e-10 70.9 51 64.7
BcaC04g19722 Brassica carinata HOM05D000867 ORTHO05D000864 1.7e-10 70.5 51 64.7
C09p53340 Brassica napus HOM05D000867 ORTHO05D000864 2.2e-10 70.1 51 62.7
AL6G42650 Arabidopsis lyrata HOM05D000867 ORTHO05D000864 2.9e-10 69.7 56 57.1
BcaC08g43801 Brassica carinata HOM05D000867 ORTHO05D000864 3.8e-10 69.3 56 62.5
BolC6t36311H Brassica oleracea HOM05D000867 ORTHO05D000864 3.8e-10 69.3 56 62.5
AT4G08840 Arabidopsis thaliana HOM05D000867 ORTHO05D000864 1.1e-09 67.8 56 55.4
BcaB08g36358 Brassica carinata HOM05D000867 ORTHO05D000864 1.1e-09 67.8 56 53.6
QL12p036586 Quercus lobata HOM05D000867 ORTHO05D000864 9.4e-09 64.7 54 46.3
Aa31LG6G8900 Aethionema arabicum HOM05D000867 ORTHO05D000864 1.6e-08 63.9 204 30.9
arahy.Tifrunner.gnm1.ann1.21V7FE Arachis hypogaea HOM05D000867 ORTHO05D000864 2.7e-08 63.2 54 51.9
arahy.Tifrunner.gnm1.ann1.A1VJLL Arachis hypogaea HOM05D000867 ORTHO05D000864 2.7e-08 63.2 54 51.9
Cpa.g.sc42.65 Carica papaya HOM05D000867 ORTHO05D000864 2.7e-08 63.2 73 42.5
Phvul.006G206800 Phaseolus vulgaris HOM05D000867 ORTHO05D000864 2.7e-08 63.2 77 45.5
Hma1.2p1_0120F.1_g057340 Hydrangea macrophylla HOM05D000867 ORTHO05D000864 3.6e-08 62.8 54 46.3
MD15G1367200 Malus domestica HOM05D000867 ORTHO05D000864 3.6e-08 62.8 65 43.1
unitig_8.g3486 Utricularia gibba HOM05D000867 ORTHO05D000864 3.6e-08 62.8 54 48.1
Atru.chr13.1204 Acer truncatum HOM05D000867 ORTHO05D000864 8.0e-08 61.6 54 42.6
Lj4A104G24 Lonicera japonica HOM05D000867 ORTHO05D000864 1.0e-07 61.2 54 42.6
EL10Ac1g01230 Beta vulgaris HOM05D000867 ORTHO05D000864 1.4e-07 60.8 54 44.4
Lalb_Chr10g0097771 Lupinus albus HOM05D000867 ORTHO05D000864 1.4e-07 60.8 54 46.3
Phvul.008G173000 Phaseolus vulgaris HOM05D000867 ORTHO05D000864 1.4e-07 60.8 54 48.1
CSS0021744 Camellia sinensis var. sinensis HOM05D000867 ORTHO05D000864 1.8e-07 60.5 54 44.4
Lj6g0013680 Lotus japonicus HOM05D000867 ORTHO05D000864 1.8e-07 60.5 75 45.3
Sc23g0000190 Simmondsia chinensis HOM05D000867 ORTHO05D000864 1.8e-07 60.5 54 44.4
Ciclev10000337m.g Citrus clementina HOM05D000867 ORTHO05D000864 2.3e-07 60.1 59 39.0
Nn1g05337 Nelumbo nucifera HOM05D000867 ORTHO05D000864 2.3e-07 60.1 54 44.4
arahy.Tifrunner.gnm1.ann1.BX6JSV Arachis hypogaea HOM05D000867 ORTHO05D000864 3.0e-07 59.7 73 45.2
Cpa.g.sc36.125 Carica papaya HOM05D000867 ORTHO05D000864 3.0e-07 59.7 54 46.3
Glyma.04G102900 Glycine max HOM05D000867 ORTHO05D000864 3.0e-07 59.7 66 43.9
Lalb_Chr20g0123051 Lupinus albus HOM05D000867 ORTHO05D000864 3.0e-07 59.7 54 44.4
SalBow5G4469 Salvia bowleyana HOM05D000867 ORTHO05D000864 3.0e-07 59.7 73 41.1
Hund26959 Selenicereus undatus HOM05D000867 ORTHO05D000864 3.0e-07 59.7 54 44.4
SGA_v2.0_scaffold332G48963 Striga asiatica HOM05D000867 ORTHO05D000864 3.0e-07 59.7 54 48.1
VMungo0540G1668 Vigna mungo HOM05D000867 ORTHO05D000864 3.0e-07 59.7 80 43.8
Dinv09037 Davidia involucrata HOM05D000867 ORTHO05D000864 4.0e-07 59.3 54 44.4
FAN08G3501 Fragaria x ananassa HOM05D000867 ORTHO05D000864 4.0e-07 59.3 79 36.7
Glyma.15G053100 Glycine max HOM05D000867 ORTHO05D000864 4.0e-07 59.3 77 42.9
arahy.Tifrunner.gnm1.ann1.5306M4 Arachis hypogaea HOM05D000867 ORTHO05D000864 5.2e-07 58.9 74 45.9
AUR62018902 Chenopodium quinoa HOM05D000867 ORTHO05D000864 5.2e-07 58.9 95 33.7
AUR62027747 Chenopodium quinoa HOM05D000867 ORTHO05D000864 5.2e-07 58.9 54 44.4
Lalb_Chr11g0065471 Lupinus albus HOM05D000867 ORTHO05D000864 5.2e-07 58.9 54 44.4
Solyc04g073980.3 Solanum lycopersicum HOM05D000867 ORTHO05D000864 5.2e-07 58.9 51 47.1
Sopen04g029190 Solanum pennellii HOM05D000867 ORTHO05D000864 5.2e-07 58.9 51 47.1
PGSC0003DMG400017721 Solanum tuberosum HOM05D000867 ORTHO05D000864 5.2e-07 58.9 51 47.1
AUR62044441 Chenopodium quinoa HOM05D000867 ORTHO05D000864 6.8e-07 58.5 90 34.4
Duzib132G1073 Durio zibethinus HOM05D000867 ORTHO05D000864 6.8e-07 58.5 63 44.4
RcHm_v2.0_Chr7g0239301 Rosa chinensis HOM05D000867 ORTHO05D000864 6.8e-07 58.5 79 35.4
TAR625G1120 Trochodendron aralioides HOM05D000867 ORTHO05D000864 6.8e-07 58.5 54 48.1
AL2G38470 Arabidopsis lyrata HOM05D000867 ORTHO05D000864 8.8e-07 58.2 54 48.1
Glyma.08G179300 Glycine max HOM05D000867 ORTHO05D000864 8.8e-07 58.2 81 42.0
AT1G78160 Arabidopsis thaliana HOM05D000867 ORTHO05D000864 1.2e-06 57.8 54 48.1
Carub.0001s2179 Capsella rubella HOM05D000867 ORTHO05D000864 1.2e-06 57.8 94 34.0
Carub.0002s2505 Capsella rubella HOM05D000867 ORTHO05D000864 1.2e-06 57.8 54 48.1
Cfa013628 Carpinus fangiana HOM05D000867 ORTHO05D000864 1.2e-06 57.8 54 42.6
MELO3C015569.2 Cucumis melo HOM05D000867 ORTHO05D000864 1.2e-06 57.8 49 49.0
DCAR_008726 Daucus carota HOM05D000867 ORTHO05D000864 1.2e-06 57.8 66 42.4
CAN.G1836.4 Capsicum annuum HOM05D000867 ORTHO05D000864 1.5e-06 57.4 51 45.1
CARHR071620 Cardamine hirsuta HOM05D000867 ORTHO05D000864 1.5e-06 57.4 54 48.1
Ca_12412_v3 Cicer arietinum L. HOM05D000867 ORTHO05D000864 1.5e-06 57.4 47 53.2
Dinv13023 Davidia involucrata HOM05D000867 ORTHO05D000864 1.5e-06 57.4 54 40.7
Thhalv10009853m.g Eutrema salsugineum HOM05D000867 ORTHO05D000864 1.5e-06 57.4 52 50.0
Glyma.06G104100 Glycine max HOM05D000867 ORTHO05D000864 1.5e-06 57.4 66 43.9
Glyma.13G088600 Glycine max HOM05D000867 ORTHO05D000864 1.5e-06 57.4 54 42.6
Gohir.A01G015000 Gossypium hirsutum HOM05D000867 ORTHO05D000864 1.5e-06 57.4 54 46.3
Lalb_Chr15g0090461 Lupinus albus HOM05D000867 ORTHO05D000864 1.5e-06 57.4 49 49.0
unitig_22.g6067 Utricularia gibba HOM05D000867 ORTHO05D000864 1.5e-06 57.4 54 46.3
Aa31LG4G8200 Aethionema arabicum HOM05D000867 ORTHO05D000864 2.0e-06 57.0 54 48.1
arahy.Tifrunner.gnm1.ann1.774JYD Arachis hypogaea HOM05D000867 ORTHO05D000864 2.0e-06 57.0 54 44.4
arahy.Tifrunner.gnm1.ann1.MRV38C Arachis hypogaea HOM05D000867 ORTHO05D000864 2.0e-06 57.0 54 44.4
MSTRG.16579 Avicennia marina HOM05D000867 ORTHO05D000864 2.0e-06 57.0 54 42.6
BcaC08g47390 Brassica carinata HOM05D000867 ORTHO05D000864 2.0e-06 57.0 51 49.0
A07p43450 Brassica napus HOM05D000867 ORTHO05D000864 2.0e-06 57.0 51 49.0
C06p52110 Brassica napus HOM05D000867 ORTHO05D000864 2.0e-06 57.0 51 49.0
BolC6t40234H Brassica oleracea HOM05D000867 ORTHO05D000864 2.0e-06 57.0 51 49.0
BraA07t31859Z Brassica rapa HOM05D000867 ORTHO05D000864 2.0e-06 57.0 51 49.0
ClCG03G014580 Citrullus lanatus HOM05D000867 ORTHO05D000864 2.0e-06 57.0 49 49.0
Haze_22258 Corylus avellana HOM05D000867 ORTHO05D000864 2.0e-06 57.0 52 44.2
CsaV3_1G041590 Cucumis sativus L. HOM05D000867 ORTHO05D000864 2.0e-06 57.0 49 49.0
Thhalv10018339m.g Eutrema salsugineum HOM05D000867 ORTHO05D000864 2.0e-06 57.0 87 36.8
FAN04G3206 Fragaria x ananassa HOM05D000867 ORTHO05D000864 2.0e-06 57.0 54 42.6
Gohir.D01G010700 Gossypium hirsutum HOM05D000867 ORTHO05D000864 2.0e-06 57.0 49 51.0
Gorai.002G012800 Gossypium raimondii HOM05D000867 ORTHO05D000864 2.0e-06 57.0 49 51.0
Thecc.02G139300 Theobroma cacao HOM05D000867 ORTHO05D000864 2.0e-06 57.0 49 51.0
TAR376G0184 Trochodendron aralioides HOM05D000867 ORTHO05D000864 2.0e-06 57.0 54 44.4
TAR628G1001 Trochodendron aralioides HOM05D000867 ORTHO05D000864 2.0e-06 57.0 54 44.4
COL.COLO4_24966 Corchorus olitorius HOM05D000867 ORTHO05D000864 2.6e-06 56.6 49 49.0
Duzib041G0719 Durio zibethinus HOM05D000867 ORTHO05D000864 2.6e-06 56.6 57 40.4
Duzib248G0024 Durio zibethinus HOM05D000867 ORTHO05D000864 2.6e-06 56.6 49 49.0
CiPaw.08G044400 Carya illinoinensis HOM05D000867 ORTHO05D000864 3.4e-06 56.2 54 38.9
FvH4_5g37620 Fragaria vesca HOM05D000867 ORTHO05D000864 3.4e-06 56.2 54 40.7
Hma1.2p1_0704F.1_g206710 Hydrangea macrophylla HOM05D000867 ORTHO05D000864 3.4e-06 56.2 54 44.4
MBI02_g08729_MAGBIO Magnolia biondii HOM05D000867 ORTHO05D000864 3.4e-06 56.2 54 44.4
Phvul.002G208100 Phaseolus vulgaris HOM05D000867 ORTHO05D000864 3.4e-06 56.2 49 49.0
Prupe.1G515100 Prunus persica HOM05D000867 ORTHO05D000864 3.4e-06 56.2 54 40.7
TWI56G0548 Tripterygium wilfordii HOM05D000867 ORTHO05D000864 3.4e-06 56.2 54 38.9
VMungo0251G0704 Vigna mungo HOM05D000867 ORTHO05D000864 3.4e-06 56.2 54 44.4
BcaB03g15983 Brassica carinata HOM05D000867 ORTHO05D000864 4.4e-06 55.8 51 49.0
BcaB05g25123 Brassica carinata HOM05D000867 ORTHO05D000864 4.4e-06 55.8 51 49.0
CARHR022590 Cardamine hirsuta HOM05D000867 ORTHO05D000864 4.4e-06 55.8 52 46.2
FAN13G1000 Fragaria x ananassa HOM05D000867 ORTHO05D000864 4.4e-06 55.8 54 40.7
FAN18G1305 Fragaria x ananassa HOM05D000867 ORTHO05D000864 4.4e-06 55.8 54 40.7
Glyma.05G118200 Glycine max HOM05D000867 ORTHO05D000864 4.4e-06 55.8 54 44.4
Os12g0488900 Oryza sativa ssp. japonica HOM05D000867 ORTHO05D000864 4.4e-06 55.8 52 46.2
QL11p020619 Quercus lobata HOM05D000867 ORTHO05D000864 4.4e-06 55.8 54 42.6
Sp5g33280 Schrenkiella parvula HOM05D000867 ORTHO05D000864 4.4e-06 55.8 51 49.0
THA.LOC104810822 Tarenaya hassleriana HOM05D000867 ORTHO05D000864 4.4e-06 55.8 54 44.4
BcaC03g15799 Brassica carinata HOM05D000867 ORTHO05D000864 5.7e-06 55.5 51 49.0
A02p22070 Brassica napus HOM05D000867 ORTHO05D000864 5.7e-06 55.5 51 49.0
A07p14600 Brassica napus HOM05D000867 ORTHO05D000864 5.7e-06 55.5 113 37.2
C02p35450 Brassica napus HOM05D000867 ORTHO05D000864 5.7e-06 55.5 51 49.0
BolC2t09558H Brassica oleracea HOM05D000867 ORTHO05D000864 5.7e-06 55.5 51 49.0
BraA02t07209Z Brassica rapa HOM05D000867 ORTHO05D000864 5.7e-06 55.5 51 49.0
BraA07t29206Z Brassica rapa HOM05D000867 ORTHO05D000864 5.7e-06 55.5 113 37.2
Manes.18G068100 Manihot esculenta HOM05D000867 ORTHO05D000864 5.7e-06 55.5 52 40.4
Nitab4.5_0002448g0020 Nicotiana tabacum HOM05D000867 ORTHO05D000864 5.7e-06 55.5 47 46.8
SEGI_36318 Sequoiadendron giganteum HOM05D000867 ORTHO05D000864 5.7e-06 55.5 52 48.1
TWI36G0942 Tripterygium wilfordii HOM05D000867 ORTHO05D000864 5.7e-06 55.5 103 28.2
Cc02_g21610 Coffea canephora HOM05D000867 ORTHO05D000864 7.5e-06 55.1 49 49.0
MELO3C015570.2 Cucumis melo HOM05D000867 ORTHO05D000864 7.5e-06 55.1 52 46.2
Gohir.D06G037100 Gossypium hirsutum HOM05D000867 ORTHO05D000864 7.5e-06 55.1 57 36.8
Lalb_Chr10g0102341 Lupinus albus HOM05D000867 ORTHO05D000864 7.5e-06 55.1 54 40.7
Manes.02G153200 Manihot esculenta HOM05D000867 ORTHO05D000864 7.5e-06 55.1 52 40.4
Nitab4.5_0005052g0020 Nicotiana tabacum HOM05D000867 ORTHO05D000864 7.5e-06 55.1 47 46.8
Os11g0579900 Oryza sativa ssp. japonica HOM05D000867 ORTHO05D000864 7.5e-06 55.1 52 46.2
ATR0697G298 Amborella trichopoda HOM05D000867 ORTHO05D000864 9.8e-06 54.7 52 44.2
A09p42530 Brassica napus HOM05D000867 ORTHO05D000864 9.8e-06 54.7 51 45.1
BraA09t39729Z Brassica rapa HOM05D000867 ORTHO05D000864 9.8e-06 54.7 51 45.1
CSS0001819 Camellia sinensis var. sinensis HOM05D000867 ORTHO05D000864 9.8e-06 54.7 47 46.8
Ciclev10017802m.g Citrus clementina HOM05D000867 ORTHO05D000864 9.8e-06 54.7 52 42.3
COL.COLO4_16418 Corchorus olitorius HOM05D000867 ORTHO05D000864 9.8e-06 54.7 57 36.8
Gorai.010G041900 Gossypium raimondii HOM05D000867 ORTHO05D000864 9.8e-06 54.7 57 36.8
Oeu000242.1 Olea europaea HOM05D000867 ORTHO05D000864 9.8e-06 54.7 54 38.9
Peaxi162Scf00041g01316 Petunia axillaris HOM05D000867 ORTHO05D000864 9.8e-06 54.7 51 43.1
Rhsim07G0201900 Rhododendron simsii HOM05D000867 ORTHO05D000864 9.8e-06 54.7 54 40.7
Sc01g0000370 Simmondsia chinensis HOM05D000867 ORTHO05D000864 9.8e-06 54.7 51 41.2


User provided reference genes

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