Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p07360 Brassica napus HOM05D005229 ORTHO05D006378 7.1e-119 430.6 220 100.0
BraA08t32752Z Brassica rapa HOM05D005229 ORTHO05D006378 7.1e-119 430.6 220 100.0
C08p09050 Brassica napus HOM05D005229 ORTHO05D006378 1.7e-117 426.0 220 98.6
BcaC07g37428 Brassica carinata HOM05D005229 ORTHO05D006378 2.3e-117 425.6 220 98.2
BolC8t47751H Brassica oleracea HOM05D005229 ORTHO05D006378 3.0e-117 425.2 220 98.6
BcaB04g17739 Brassica carinata HOM05D005229 ORTHO05D006378 3.4e-113 411.8 220 95.5
Sp7g09420 Schrenkiella parvula HOM05D005229 ORTHO05D006378 4.4e-113 411.4 220 95.9
Thhalv10026195m.g Eutrema salsugineum HOM05D005229 ORTHO05D006378 2.2e-112 409.1 220 94.5
AL9U11740 Arabidopsis lyrata HOM05D005229 ORTHO05D006378 3.2e-111 405.2 220 93.6
BcaC02g09463 Brassica carinata HOM05D005229 ORTHO05D006378 1.2e-110 403.3 220 94.1
C04p43050 Brassica napus HOM05D005229 ORTHO05D006378 1.2e-110 403.3 220 94.1
BolC4t25883H Brassica oleracea HOM05D005229 ORTHO05D006378 1.2e-110 403.3 220 94.1
A04p09140 Brassica napus HOM05D005229 ORTHO05D006378 6.0e-110 401.0 220 93.6
CARHR218150 Cardamine hirsuta HOM05D005229 ORTHO05D006378 6.0e-110 401.0 220 92.3
Aa31LG9G5690 Aethionema arabicum HOM05D005229 ORTHO05D006378 1.0e-109 400.2 220 91.4
AT4G12800 Arabidopsis thaliana HOM05D005229 ORTHO05D006378 1.7e-109 399.4 220 92.3
THA.LOC104808816 Tarenaya hassleriana HOM05D005229 ORTHO05D006378 1.5e-108 396.4 220 90.5
BcaB03g16154 Brassica carinata HOM05D005229 ORTHO05D006378 3.3e-108 395.2 220 91.4
Carub.0007s3001 Capsella rubella HOM05D005229 ORTHO05D006378 3.3e-108 395.2 220 90.0
Solyc06g082940.3 Solanum lycopersicum HOM05D005229 ORTHO05D006378 1.7e-101 372.9 221 85.1
Sopen06g034330 Solanum pennellii HOM05D005229 ORTHO05D006378 6.6e-101 370.9 221 85.1
PGSC0003DMG400027671 Solanum tuberosum HOM05D005229 ORTHO05D006378 1.9e-100 369.4 221 85.1
Peaxi162Scf00841g00210 Petunia axillaris HOM05D005229 ORTHO05D006378 5.6e-100 367.9 220 83.2
COL.COLO4_07353 Corchorus olitorius HOM05D005229 ORTHO05D006378 1.3e-99 366.7 221 84.2
Gohir.D07G168100 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.3e-99 366.7 221 84.6
Sopen06g034340 Solanum pennellii HOM05D005229 ORTHO05D006378 1.3e-99 366.7 221 84.2
Sabra14G0134400 Salix brachista HOM05D005229 ORTHO05D006378 1.6e-99 366.3 220 84.5
Solyc06g082950.4 Solanum lycopersicum HOM05D005229 ORTHO05D006378 1.6e-99 366.3 221 84.6
Cpa.g.sc8.42 Carica papaya HOM05D005229 ORTHO05D006378 2.1e-99 365.9 220 82.7
Gohir.A07G160500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 2.1e-99 365.9 221 84.6
PGSC0003DMG400027672 Solanum tuberosum HOM05D005229 ORTHO05D006378 2.1e-99 365.9 221 84.2
CAN.G874.38 Capsicum annuum HOM05D005229 ORTHO05D006378 2.8e-99 365.5 221 84.2
Oeu013526.1 Olea europaea HOM05D005229 ORTHO05D006378 2.8e-99 365.5 220 83.6
Oeu025298.1 Olea europaea HOM05D005229 ORTHO05D006378 3.6e-99 365.2 220 83.2
Potri.014G175600 Populus trichocarpa HOM05D005229 ORTHO05D006378 3.6e-99 365.2 220 83.6
CAN.G874.39 Capsicum annuum HOM05D005229 ORTHO05D006378 1.1e-98 363.6 221 83.7
ECA236G3288 Erigeron canadensis HOM05D005229 ORTHO05D006378 1.1e-98 363.6 220 82.7
Prupe.6G361000 Prunus persica HOM05D005229 ORTHO05D006378 2.4e-98 362.5 217 82.0
Manes.12G055600 Manihot esculenta HOM05D005229 ORTHO05D006378 5.3e-98 361.3 216 83.3
Gorai.N002100 Gossypium raimondii HOM05D005229 ORTHO05D006378 9.0e-98 360.5 221 84.6
SalBow3G3798 Salvia bowleyana HOM05D005229 ORTHO05D006378 9.0e-98 360.5 221 82.8
SGA_v2.0_scaffold29G12061 Striga asiatica HOM05D005229 ORTHO05D006378 9.0e-98 360.5 220 82.3
Gohir.A07G089500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.5e-97 359.8 221 83.7
Gorai.001G101200 Gossypium raimondii HOM05D005229 ORTHO05D006378 1.5e-97 359.8 221 81.9
Aqoxy2G04070 Aquilegia oxysepala HOM05D005229 ORTHO05D006378 2.0e-97 359.4 220 83.2
DCAR_018610 Daucus carota HOM05D005229 ORTHO05D006378 2.0e-97 359.4 220 81.8
Eucgr.K02362 Eucalyptus grandis HOM05D005229 ORTHO05D006378 2.6e-97 359.0 230 80.0
Migut.D00776 Erythranthe guttata HOM05D005229 ORTHO05D006378 3.4e-97 358.6 222 84.2
Potri.002G239700 Populus trichocarpa HOM05D005229 ORTHO05D006378 3.4e-97 358.6 220 81.4
Thecc.01G207800 Theobroma cacao HOM05D005229 ORTHO05D006378 3.4e-97 358.6 220 81.8
Sabra02G0182500 Salix brachista HOM05D005229 ORTHO05D006378 5.8e-97 357.8 220 82.7
HanXRQChr12g0363961 Helianthus annuus HOM05D005229 ORTHO05D006378 7.6e-97 357.5 220 81.8
AUR62000314 Chenopodium quinoa HOM05D005229 ORTHO05D006378 1.3e-96 356.7 221 81.4
Gohir.D07G094300 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.3e-96 356.7 221 81.9
Atru.chr6.3527 Acer truncatum HOM05D005229 ORTHO05D006378 2.2e-96 355.9 220 81.4
PGR083G1330 Punica granatum HOM05D005229 ORTHO05D006378 2.2e-96 355.9 221 80.1
QL01p048658 Quercus lobata HOM05D005229 ORTHO05D006378 2.9e-96 355.5 216 81.5
unitig_0.g420 Utricularia gibba HOM05D005229 ORTHO05D006378 3.8e-96 355.1 220 80.5
Lj1g0022024 Lotus japonicus HOM05D005229 ORTHO05D006378 4.9e-96 354.8 217 82.0
MSTRG.17960 Avicennia marina HOM05D005229 ORTHO05D006378 6.4e-96 354.4 220 80.5
DCAR_012704 Daucus carota HOM05D005229 ORTHO05D006378 8.4e-96 354.0 219 80.4
Lsat_1_v5_gn_8_98481 Lactuca sativa HOM05D005229 ORTHO05D006378 1.1e-95 353.6 220 79.5
AUR62006659 Chenopodium quinoa HOM05D005229 ORTHO05D006378 1.4e-95 353.2 221 80.1
Nn1g09761 Nelumbo nucifera HOM05D005229 ORTHO05D006378 1.4e-95 353.2 216 81.9
unitig_60.g25573 Utricularia gibba HOM05D005229 ORTHO05D006378 2.4e-95 352.4 220 80.0
MSTRG.12743 Avicennia marina HOM05D005229 ORTHO05D006378 4.2e-95 351.7 220 80.0
Ciclev10016637m.g Citrus clementina HOM05D005229 ORTHO05D006378 4.2e-95 351.7 220 80.0
CsaV3_2G009680 Cucumis sativus L. HOM05D005229 ORTHO05D006378 4.2e-95 351.7 220 80.5
TAR365G0963 Trochodendron aralioides HOM05D005229 ORTHO05D006378 4.2e-95 351.7 216 80.6
Rhsim01G0247800 Rhododendron simsii HOM05D005229 ORTHO05D006378 5.4e-95 351.3 222 81.5
RcHm_v2.0_Chr3g0447921 Rosa chinensis HOM05D005229 ORTHO05D006378 5.4e-95 351.3 217 81.6
arahy.Tifrunner.gnm1.ann1.MF538D Arachis hypogaea HOM05D005229 ORTHO05D006378 9.3e-95 350.5 217 80.2
ClCG11G010740 Citrullus lanatus HOM05D005229 ORTHO05D006378 9.3e-95 350.5 220 80.0
MELO3C008731.2 Cucumis melo HOM05D005229 ORTHO05D006378 9.3e-95 350.5 220 80.0
vmacro14690 Vaccinium macrocarpon HOM05D005229 ORTHO05D006378 1.2e-94 350.1 221 81.4
Cfa006268 Carpinus fangiana HOM05D005229 ORTHO05D006378 1.6e-94 349.7 216 80.6
FvH4_6g00530 Fragaria vesca HOM05D005229 ORTHO05D006378 1.6e-94 349.7 217 81.1
FAN02G4095 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.6e-94 349.7 217 81.1
FAN05G0704 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.6e-94 349.7 217 81.1
FAN09G4314 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.6e-94 349.7 217 81.1
CiPaw.07G079800 Carya illinoinensis HOM05D005229 ORTHO05D006378 2.1e-94 349.4 218 80.3
FAN14G1738 Fragaria x ananassa HOM05D005229 ORTHO05D006378 2.1e-94 349.4 217 81.1
arahy.Tifrunner.gnm1.ann1.18YQBF Arachis hypogaea HOM05D005229 ORTHO05D006378 3.5e-94 348.6 217 79.7
CDE06G2797 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 3.5e-94 348.6 219 79.5
Lalb_Chr19g0127611 Lupinus albus HOM05D005229 ORTHO05D006378 3.5e-94 348.6 217 80.2
Ca_07979_v3 Cicer arietinum L. HOM05D005229 ORTHO05D006378 4.6e-94 348.2 217 80.2
Haze_04550 Corylus avellana HOM05D005229 ORTHO05D006378 4.6e-94 348.2 216 80.1
Glyma.18G241700 Glycine max HOM05D005229 ORTHO05D006378 4.6e-94 348.2 217 80.2
Medtr7g079900 Medicago truncatula HOM05D005229 ORTHO05D006378 4.6e-94 348.2 217 79.3
Lsat_1_v5_gn_9_16861 Lactuca sativa HOM05D005229 ORTHO05D006378 1.3e-93 346.7 214 80.4
MD12G1260300 Malus domestica HOM05D005229 ORTHO05D006378 1.3e-93 346.7 218 78.9
Psat3g138440 Pisum sativum HOM05D005229 ORTHO05D006378 1.3e-93 346.7 217 80.2
CANSAT54G2118 Cannabis sativa HOM05D005229 ORTHO05D006378 1.7e-93 346.3 219 79.5
MD04G1244400 Malus domestica HOM05D005229 ORTHO05D006378 1.7e-93 346.3 218 78.9
Glyma.09G250800 Glycine max HOM05D005229 ORTHO05D006378 2.3e-93 345.9 217 79.7
HanXRQChr08g0231801 Helianthus annuus HOM05D005229 ORTHO05D006378 2.3e-93 345.9 214 79.9
TWI18G1321 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 3.0e-93 345.5 217 78.8
EL10Ac4g09972 Beta vulgaris HOM05D005229 ORTHO05D006378 3.9e-93 345.1 221 78.7
PSO017G0175 Papaver somniferum HOM05D005229 ORTHO05D006378 3.9e-93 345.1 217 81.6
PSO675G2116 Papaver somniferum HOM05D005229 ORTHO05D006378 3.9e-93 345.1 217 81.6
Sed0023204 Sechium edule HOM05D005229 ORTHO05D006378 3.9e-93 345.1 220 79.1
Duzib138G0242 Durio zibethinus HOM05D005229 ORTHO05D006378 5.1e-93 344.7 221 79.2
Sed0003052 Sechium edule HOM05D005229 ORTHO05D006378 5.1e-93 344.7 220 79.5
ECA247G0242 Erigeron canadensis HOM05D005229 ORTHO05D006378 1.9e-92 342.8 215 80.5
VMungo1383G0609 Vigna mungo HOM05D005229 ORTHO05D006378 2.5e-92 342.4 221 77.8
TWI36G1337 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 3.3e-92 342.0 219 78.1
Lalb_Chr01g0020361 Lupinus albus HOM05D005229 ORTHO05D006378 7.4e-92 340.9 217 79.3
TPR.G30351 Trifolium pratense HOM05D005229 ORTHO05D006378 7.4e-92 340.9 218 79.8
GSVIVG01019114001 Vitis vinifera HOM05D005229 ORTHO05D006378 1.3e-91 340.1 220 77.7
Lj2P1112T20 Lonicera japonica HOM05D005229 ORTHO05D006378 2.1e-91 339.3 214 79.4
Phvul.008G054400 Phaseolus vulgaris HOM05D005229 ORTHO05D006378 2.8e-91 339.0 217 77.9
PGR044G1943 Punica granatum HOM05D005229 ORTHO05D006378 4.8e-91 338.2 218 78.4
Thecc.05G199500 Theobroma cacao HOM05D005229 ORTHO05D006378 4.8e-91 338.2 216 78.2
Hund07343 Selenicereus undatus HOM05D005229 ORTHO05D006378 6.2e-91 337.8 223 77.1
Actinidia34531 Actinidia chinensis HOM05D005229 ORTHO05D006378 1.4e-90 336.7 222 79.3
Cc01_g15890 Coffea canephora HOM05D005229 ORTHO05D006378 1.4e-90 336.7 221 76.0
MBI07_g06134_MAGBIO Magnolia biondii HOM05D005229 ORTHO05D006378 1.8e-90 336.3 221 76.9
CSS0044510 Camellia sinensis var. sinensis HOM05D005229 ORTHO05D006378 2.4e-90 335.9 226 76.5
Ah.04g158950 Amaranthus hybridus HOM05D005229 ORTHO05D006378 3.8e-88 328.6 220 75.0
Os12g0420400 Oryza sativa ssp. japonica HOM05D005229 ORTHO05D006378 5.3e-82 308.1 220 71.8
Lj1P104T52 Lonicera japonica HOM05D005229 ORTHO05D006378 2.6e-81 305.8 165 89.7
SEGI_02964 Sequoiadendron giganteum HOM05D005229 ORTHO05D006378 1.0e-80 303.9 221 70.6
CDE06G0966 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 2.2e-80 302.8 194 78.4
Zm00001eb123000 Zea mays HOM05D005229 ORTHO05D006378 4.9e-80 301.6 221 71.9
ATR1147G045 Amborella trichopoda HOM05D005229 ORTHO05D006378 1.4e-79 300.1 226 69.0
Nitab4.5_0001348g0130 Nicotiana tabacum HOM05D005229 ORTHO05D006378 1.1e-74 283.9 165 85.5
Mapoly0102s0025 Marchantia polymorpha HOM05D005229 ORTHO05D006378 2.6e-73 279.3 173 78.0
Zm00001eb336580 Zea mays HOM05D005229 ORTHO05D006378 5.9e-73 278.1 163 81.6
Pp3c16_5670 Physcomitrium patens HOM05D005229 ORTHO05D006378 3.8e-72 275.4 172 77.9
Pp3c5_4200 Physcomitrium patens HOM05D005229 ORTHO05D006378 5.0e-72 275.0 232 65.5
AagrBONN_evm.TU.Sc2ySwM_362.2854 Anthoceros agrestis HOM05D005229 ORTHO05D006378 1.4e-71 273.5 171 78.4
Pp3c27_2310 Physcomitrium patens HOM05D005229 ORTHO05D006378 3.2e-71 272.3 175 77.7
Dinv28794 Davidia involucrata HOM05D005229 ORTHO05D006378 5.0e-64 248.4 220 62.3
CBR_g27900 Chara braunii HOM05D005229 ORTHO05D006378 3.0e-61 239.2 219 60.7
Nitab4.5_0001348g0080 Nicotiana tabacum HOM05D005229 ORTHO05D006378 2.2e-59 233.0 222 60.8
Peaxi162Scf01242g00025 Petunia axillaris HOM05D005229 ORTHO05D006378 2.6e-57 226.1 220 58.6
MCO13G042 Micromonas commoda HOM05D005229 ORTHO05D006378 5.9e-49 198.4 196 54.1
Cre12.g486300 Chlamydomonas reinhardtii HOM05D005229 ORTHO05D006378 2.1e-46 189.9 211 51.2
Hma1.2p1_0171F.1_g075540 Hydrangea macrophylla HOM05D005229 ORTHO05D006378 3.0e-45 186.0 127 74.0
PRCOL_00002830 Prasinoderma coloniale HOM05D005229 ORTHO05D006378 1.8e-42 176.8 150 57.3
Actinidia23801 Actinidia chinensis HOM05D005229 ORTHO05D006378 1.7e-40 170.2 139 68.3
MD04G1204600 Malus domestica HOM05D000208 ORTHO05D000130 5.7e-28 128.6 104 67.3
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 3.3e-15 86.3 59 71.2
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 3.3e-15 86.3 59 71.2
Aa31LG9G5680 Aethionema arabicum HOM05D001772 ORTHO05D000476 2.2e-11 73.6 56 69.6
Actinidia23346 Actinidia chinensis HOM05D005229 ORTHO05D057974 1.9e-07 60.5 60 50.0
Nitab4.5_0014403g0020 Nicotiana tabacum HOM05D005229 ORTHO05D006378 5.6e-07 58.9 57 56.1


User provided reference genes

Program Settings