Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p06640 Brassica napus HOM05D004148 ORTHO05D004709 2.0e-53 212.2 110 100.0
BraA07t28462Z Brassica rapa HOM05D004148 ORTHO05D004709 9.5e-48 193.4 110 94.5
BraA05t21194Z Brassica rapa HOM05D004148 ORTHO05D004709 1.9e-40 169.1 110 87.3
C05p34090 Brassica napus HOM05D004148 ORTHO05D004709 5.6e-40 167.5 110 85.5
BcaB02g10777 Brassica carinata HOM05D004148 ORTHO05D004709 8.0e-39 163.7 109 82.6
BcaC01g02217 Brassica carinata HOM05D004148 ORTHO05D004709 1.7e-36 156.0 109 80.7
BolSC21t60233H Brassica oleracea HOM05D004148 ORTHO05D004709 1.7e-36 156.0 109 80.7
BolC8t48007H Brassica oleracea HOM05D004148 ORTHO05D004709 2.4e-35 152.1 114 78.1
A05p23300 Brassica napus HOM05D004148 ORTHO05D004709 8.6e-33 143.7 117 75.2
BolC3t19498H Brassica oleracea HOM05D004148 ORTHO05D004709 1.1e-32 143.3 109 74.3
Sp5g17550 Schrenkiella parvula HOM05D004148 ORTHO05D004709 3.3e-32 141.7 113 76.1
CARHR108980 Cardamine hirsuta HOM05D004148 ORTHO05D004709 4.3e-32 141.4 111 73.0
BcaC01g01775 Brassica carinata HOM05D004148 ORTHO05D004709 5.6e-32 141.0 109 73.4
C03p72000 Brassica napus HOM05D004148 ORTHO05D004709 5.6e-32 141.0 109 73.4
A06p19850 Brassica napus HOM05D004148 ORTHO05D004709 7.3e-32 140.6 113 72.6
Thhalv10002374m.g Eutrema salsugineum HOM05D004148 ORTHO05D004709 1.2e-31 139.8 111 73.0
A08p03240 Brassica napus HOM05D004148 ORTHO05D004709 3.6e-31 138.3 113 74.3
A09p33570 Brassica napus HOM05D004148 ORTHO05D004709 3.6e-31 138.3 112 74.1
A10p16420 Brassica napus HOM05D004148 ORTHO05D004709 3.6e-31 138.3 112 74.1
C06p15540 Brassica napus HOM05D004148 ORTHO05D004709 3.6e-31 138.3 112 74.1
C08p23060 Brassica napus HOM05D004148 ORTHO05D004709 3.6e-31 138.3 112 74.1
AL5G21540 Arabidopsis lyrata HOM05D004148 ORTHO05D004709 4.7e-31 137.9 107 75.7
BraA06t25067Z Brassica rapa HOM05D004148 ORTHO05D004709 4.7e-31 137.9 113 72.6
Aa31LG4G13420 Aethionema arabicum HOM05D004148 ORTHO05D004709 2.0e-29 132.5 111 70.3
Carub.0005s0934 Capsella rubella HOM05D004148 ORTHO05D004709 2.6e-29 132.1 107 71.0
Carub.0005s0948 Capsella rubella HOM05D004148 ORTHO05D004709 2.6e-29 132.1 107 71.0
AT3G43610 Arabidopsis thaliana HOM05D004148 ORTHO05D004709 1.9e-27 125.9 110 69.1
THA.LOC104815063 Tarenaya hassleriana HOM05D004148 ORTHO05D004709 3.5e-26 121.7 111 64.9
Thecc.09G266000 Theobroma cacao HOM05D004148 ORTHO05D004709 4.3e-24 114.8 110 60.0
Cpa.g.sc103.97 Carica papaya HOM05D004148 ORTHO05D004709 2.8e-23 112.1 111 62.2
COL.COLO4_25330 Corchorus olitorius HOM05D004148 ORTHO05D004709 6.2e-23 110.9 110 60.0
Gorai.009G080700 Gossypium raimondii HOM05D004148 ORTHO05D004709 8.1e-23 110.5 111 61.3
Sed0012220 Sechium edule HOM05D004148 ORTHO05D004709 8.1e-23 110.5 106 57.5
Gohir.D05G079200 Gossypium hirsutum HOM05D004148 ORTHO05D004709 1.8e-22 109.4 111 60.4
ClCG05G010880 Citrullus lanatus HOM05D004148 ORTHO05D004709 5.8e-21 104.4 112 55.4
CsaV3_3G017640 Cucumis sativus L. HOM05D004148 ORTHO05D004709 1.3e-20 103.2 112 54.5
MELO3C020298.2 Cucumis melo HOM05D004148 ORTHO05D004709 2.2e-20 102.4 112 53.6
Gohir.A05G076400 Gossypium hirsutum HOM05D004148 ORTHO05D004709 4.9e-20 101.3 119 53.8
PGR102G2778 Punica granatum HOM05D004148 ORTHO05D004709 1.1e-19 100.1 117 49.6
Migut.D00721 Erythranthe guttata HOM05D004148 ORTHO05D004709 1.4e-19 99.8 115 52.2
Eucgr.B03795 Eucalyptus grandis HOM05D004148 ORTHO05D004709 2.4e-19 99.0 115 52.2
Prupe.6G151400 Prunus persica HOM05D004148 ORTHO05D004709 3.2e-19 98.6 106 56.6
SalBow6G3333 Salvia bowleyana HOM05D004148 ORTHO05D004709 4.1e-19 98.2 107 54.2
Hma1.2p1_0218F.1_g092390 Hydrangea macrophylla HOM05D004148 ORTHO05D004709 9.2e-19 97.1 116 52.6
Ciclev10027694m.g Citrus clementina HOM05D004148 ORTHO05D004709 1.2e-18 96.7 114 51.8
FAN17G2621 Fragaria x ananassa HOM05D004148 ORTHO05D004709 1.2e-18 96.7 104 57.7
RcHm_v2.0_Chr5g0049541 Rosa chinensis HOM05D004148 ORTHO05D004709 1.2e-18 96.7 112 55.4
CSS0039701 Camellia sinensis var. sinensis HOM05D004148 ORTHO05D004709 1.6e-18 96.3 117 51.3
CSS0039756 Camellia sinensis var. sinensis HOM05D004148 ORTHO05D004709 1.6e-18 96.3 117 51.3
FvH4_4g33990 Fragaria vesca HOM05D004148 ORTHO05D004709 1.6e-18 96.3 104 57.7
MD11G1178600 Malus domestica HOM05D004148 ORTHO05D004709 1.6e-18 96.3 115 54.8
FAN22G0787 Fragaria x ananassa HOM05D004148 ORTHO05D004709 2.1e-18 95.9 104 56.7
Atru.chr3.3014 Acer truncatum HOM05D004148 ORTHO05D004709 3.5e-18 95.1 112 56.2
MSTRG.21311 Avicennia marina HOM05D004148 ORTHO05D004709 3.5e-18 95.1 111 55.9
Haze_23628 Corylus avellana HOM05D004148 ORTHO05D004709 3.5e-18 95.1 116 52.6
Dinv32838 Davidia involucrata HOM05D004148 ORTHO05D004709 3.5e-18 95.1 116 51.7
Lj2A891G11 Lonicera japonica HOM05D004148 ORTHO05D004709 3.5e-18 95.1 113 54.0
GSVIVG01022379001 Vitis vinifera HOM05D004148 ORTHO05D004709 6.0e-18 94.4 102 54.9
QL01p018674 Quercus lobata HOM05D004148 ORTHO05D004709 1.0e-17 93.6 113 53.1
FAN12G2472 Fragaria x ananassa HOM05D004148 ORTHO05D004709 1.3e-17 93.2 103 56.3
Cfa010235 Carpinus fangiana HOM05D004148 ORTHO05D004709 2.3e-17 92.4 116 51.7
TWI60G0836 Tripterygium wilfordii HOM05D004148 ORTHO05D004709 3.9e-17 91.7 114 50.9
CAN.G439.18 Capsicum annuum HOM05D004148 ORTHO05D004709 8.7e-17 90.5 115 51.3
MD03G1162400 Malus domestica HOM05D004148 ORTHO05D004709 8.7e-17 90.5 114 48.2
arahy.Tifrunner.gnm1.ann1.SF9HJV Arachis hypogaea HOM05D004148 ORTHO05D004709 1.1e-16 90.1 111 49.5
Nn2g14486 Nelumbo nucifera HOM05D004148 ORTHO05D004709 1.1e-16 90.1 114 47.4
Solyc11g071570.3 Solanum lycopersicum HOM05D004148 ORTHO05D004709 1.1e-16 90.1 117 51.3
Sopen11g029250 Solanum pennellii HOM05D004148 ORTHO05D004709 1.1e-16 90.1 117 51.3
Sc06g0008560 Simmondsia chinensis HOM05D004148 ORTHO05D004709 1.9e-16 89.4 118 44.9
TAR623G1397 Trochodendron aralioides HOM05D004148 ORTHO05D004709 1.9e-16 89.4 115 48.7
VMungo1215G0285 Vigna mungo HOM05D004148 ORTHO05D004709 4.3e-16 88.2 116 50.9
Nitab4.5_0000615g0090 Nicotiana tabacum HOM05D004148 ORTHO05D004709 5.6e-16 87.8 116 52.6
Oeu048810.1 Olea europaea HOM05D004148 ORTHO05D004709 7.3e-16 87.4 109 50.5
EL10Ac7g16248 Beta vulgaris HOM05D004148 ORTHO05D004709 1.2e-15 86.7 112 47.3
PSO384G5014 Papaver somniferum HOM05D004148 ORTHO05D004709 1.2e-15 86.7 113 46.9
Aqoxy1G00551 Aquilegia oxysepala HOM05D004148 ORTHO05D004709 1.6e-15 86.3 114 43.9
vmacro04063 Vaccinium macrocarpon HOM05D004148 ORTHO05D004709 3.6e-15 85.1 118 46.6
Rhsim13G0199700 Rhododendron simsii HOM05D004148 ORTHO05D004709 4.7e-15 84.7 117 49.6
PSO339G2294 Papaver somniferum HOM05D004148 ORTHO05D004709 6.2e-15 84.3 113 46.0
BcaC08g43976 Brassica carinata HOM05D000046 ORTHO05D032580 1.4e-14 83.2 63 73.0
C06p13770 Brassica napus HOM05D000046 ORTHO05D032580 1.4e-14 83.2 63 73.0
BolC6t36550H Brassica oleracea HOM05D000186 ORTHO05D032580 1.4e-14 83.2 63 73.0
CANSAT54G2785 Cannabis sativa HOM05D004148 ORTHO05D004709 1.8e-14 82.8 111 45.9
AUR62020189 Chenopodium quinoa HOM05D004148 ORTHO05D004709 2.4e-14 82.4 108 46.3
Phvul.002G053700 Phaseolus vulgaris HOM05D004148 ORTHO05D004709 2.4e-14 82.4 117 45.3
Peaxi162Scf00217g00627 Petunia axillaris HOM05D004148 ORTHO05D004709 3.1e-14 82.0 112 50.0
Ah.15g099170 Amaranthus hybridus HOM05D004148 ORTHO05D004709 4.0e-14 81.6 107 47.7
Potri.009G153300 Populus trichocarpa HOM05D004148 ORTHO05D004709 5.2e-14 81.3 129 44.2
HanXRQChr03g0089821 Helianthus annuus HOM05D004148 ORTHO05D004709 6.9e-14 80.9 113 48.7
Nitab4.5_0005222g0040 Nicotiana tabacum HOM05D004148 ORTHO05D004709 6.9e-14 80.9 116 49.1
Cc00_g06190 Coffea canephora HOM05D004148 ORTHO05D004709 3.4e-13 78.6 112 45.5
HPP92_019532 Vanilla planifolia HOM05D004148 ORTHO05D004709 4.4e-13 78.2 113 44.2
Lsat_1_v5_gn_5_75780 Lactuca sativa HOM05D004148 ORTHO05D004709 9.9e-13 77.0 116 45.7
MBI11_g07705_MAGBIO Magnolia biondii HOM05D004148 ORTHO05D004709 9.9e-13 77.0 103 46.6
ATR0697G020 Amborella trichopoda HOM05D004148 ORTHO05D004709 1.7e-12 76.3 118 42.4
C04p47150 Brassica napus HOM05D004148 ORTHO05D027074 1.7e-12 76.3 86 53.5
BolC4t26312H Brassica oleracea HOM05D004148 ORTHO05D027074 1.7e-12 76.3 86 53.5
BcaC06g36511 Brassica carinata HOM05D004148 ORTHO05D027074 2.2e-12 75.9 51 80.4
DCAR_012264 Daucus carota HOM05D000495 ORTHO05D000357 1.1e-11 73.6 90 51.1
ECA233G2337 Erigeron canadensis HOM05D004148 ORTHO05D004709 3.2e-11 72.0 90 53.3
Lj1g0011831 Lotus japonicus HOM05D004148 ORTHO05D004709 4.2e-11 71.6 107 44.9
BraA09t38674Z Brassica rapa HOM05D004148 ORTHO05D027074 2.1e-10 69.3 50 76.0
Actinidia12896 Actinidia chinensis HOM05D001400 ORTHO05D001795 3.5e-10 68.6 82 53.7
Glyma.01G244400 Glycine max HOM05D004148 ORTHO05D004709 7.8e-10 67.4 104 45.2
SHI25296 Sapria himalayana HOM05D004148 ORTHO05D004709 1.0e-09 67.0 61 62.3
Hund18819 Selenicereus undatus HOM05D004148 ORTHO05D004709 1.0e-09 67.0 108 38.9
CDE07G1769 Ceratophyllum demersum HOM05D004148 ORTHO05D004709 1.3e-09 66.6 114 38.6
SGA_v2.0_scaffold29G12109 Striga asiatica HOM05D004148 ORTHO05D004709 1.3e-09 66.6 146 38.4
Os04g0566900 Oryza sativa ssp. japonica HOM05D004148 ORTHO05D004709 3.0e-09 65.5 112 41.1
unitig_21.g20312 Utricularia gibba HOM05D004148 ORTHO05D004709 8.7e-09 63.9 60 60.0
A06p05890 Brassica napus HOM05D004148 ORTHO05D004709 7.3e-08 60.8 29 100.0
Zm00001eb428880 Zea mays HOM05D004148 ORTHO05D004709 9.6e-08 60.5 110 38.2
SEGI_35526 Sequoiadendron giganteum HOM05D004148 ORTHO05D004709 1.6e-07 59.7 60 50.0
Zm00001eb073760 Zea mays HOM05D004148 ORTHO05D004709 6.2e-07 57.8 112 36.6


User provided reference genes

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