Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p03240 Brassica napus HOM05D004148 ORTHO05D004709 8.6e-45 183.3 97 100.0
A09p33570 Brassica napus HOM05D004148 ORTHO05D004709 1.1e-42 176.4 96 97.9
A10p16420 Brassica napus HOM05D004148 ORTHO05D004709 1.1e-42 176.4 96 97.9
C06p15540 Brassica napus HOM05D004148 ORTHO05D004709 1.1e-42 176.4 96 97.9
C08p23060 Brassica napus HOM05D004148 ORTHO05D004709 1.1e-42 176.4 96 97.9
A08p06640 Brassica napus HOM05D004148 ORTHO05D004709 1.9e-31 139.0 113 74.3
BraA07t28462Z Brassica rapa HOM05D004148 ORTHO05D004709 1.9e-31 139.0 113 74.3
BolC8t48007H Brassica oleracea HOM05D004148 ORTHO05D004709 6.0e-30 134.0 114 71.9
C05p34090 Brassica napus HOM05D004148 ORTHO05D004709 1.5e-28 129.4 113 69.9
BcaB02g10777 Brassica carinata HOM05D004148 ORTHO05D004709 6.9e-26 120.6 112 68.8
BraA05t21194Z Brassica rapa HOM05D004148 ORTHO05D004709 9.9e-25 116.7 113 67.3
BcaC01g02217 Brassica carinata HOM05D004148 ORTHO05D004709 1.3e-24 116.3 112 67.0
BolSC21t60233H Brassica oleracea HOM05D004148 ORTHO05D004709 1.3e-24 116.3 112 67.0
C03p72000 Brassica napus HOM05D004148 ORTHO05D004709 1.7e-24 115.9 111 65.8
BolC3t19498H Brassica oleracea HOM05D004148 ORTHO05D004709 1.7e-24 115.9 111 65.8
BcaC01g01775 Brassica carinata HOM05D004148 ORTHO05D004709 8.4e-24 113.6 111 64.9
Sp5g17550 Schrenkiella parvula HOM05D004148 ORTHO05D004709 1.1e-23 113.2 114 63.2
Aa31LG4G13420 Aethionema arabicum HOM05D004148 ORTHO05D004709 1.4e-23 112.8 112 63.4
A06p19850 Brassica napus HOM05D004148 ORTHO05D004709 1.4e-23 112.8 113 63.7
BraA06t25067Z Brassica rapa HOM05D004148 ORTHO05D004709 5.5e-23 110.9 113 63.7
A05p23300 Brassica napus HOM05D004148 ORTHO05D004709 4.6e-22 107.8 117 59.8
CARHR108980 Cardamine hirsuta HOM05D004148 ORTHO05D004709 4.6e-22 107.8 112 60.7
Thhalv10002374m.g Eutrema salsugineum HOM05D004148 ORTHO05D004709 4.6e-22 107.8 112 61.6
AL5G21540 Arabidopsis lyrata HOM05D004148 ORTHO05D004709 1.3e-21 106.3 109 63.3
Carub.0005s0934 Capsella rubella HOM05D004148 ORTHO05D004709 3.9e-21 104.8 108 62.0
Carub.0005s0948 Capsella rubella HOM05D004148 ORTHO05D004709 3.9e-21 104.8 108 62.0
AT3G43610 Arabidopsis thaliana HOM05D004148 ORTHO05D004709 6.2e-19 97.4 81 66.7
THA.LOC104815063 Tarenaya hassleriana HOM05D004148 ORTHO05D004709 1.5e-17 92.8 113 54.0
COL.COLO4_25330 Corchorus olitorius HOM05D004148 ORTHO05D004709 1.7e-16 89.4 110 51.8
Cpa.g.sc103.97 Carica papaya HOM05D004148 ORTHO05D004709 8.4e-16 87.0 112 51.8
Gohir.D05G079200 Gossypium hirsutum HOM05D004148 ORTHO05D004709 1.1e-15 86.7 111 51.4
Sed0012220 Sechium edule HOM05D004148 ORTHO05D004709 1.1e-15 86.7 106 50.9
Thecc.09G266000 Theobroma cacao HOM05D004148 ORTHO05D004709 1.9e-15 85.9 113 50.4
Gorai.009G080700 Gossypium raimondii HOM05D004148 ORTHO05D004709 3.2e-15 85.1 111 50.5
Gohir.A05G076400 Gossypium hirsutum HOM05D004148 ORTHO05D004709 4.2e-15 84.7 119 46.2
Lj2A891G11 Lonicera japonica HOM05D004148 ORTHO05D004709 5.5e-15 84.3 113 49.6
Nn2g14486 Nelumbo nucifera HOM05D004148 ORTHO05D004709 5.5e-15 84.3 114 47.4
PGR102G2778 Punica granatum HOM05D004148 ORTHO05D004709 5.5e-15 84.3 117 46.2
Haze_23628 Corylus avellana HOM05D004148 ORTHO05D004709 7.1e-15 84.0 116 49.1
SalBow6G3333 Salvia bowleyana HOM05D004148 ORTHO05D004709 9.3e-15 83.6 106 48.1
Cfa010235 Carpinus fangiana HOM05D004148 ORTHO05D004709 6.0e-14 80.9 116 48.3
ClCG05G010880 Citrullus lanatus HOM05D004148 ORTHO05D004709 7.9e-14 80.5 82 53.7
Prupe.6G151400 Prunus persica HOM05D004148 ORTHO05D004709 1.0e-13 80.1 106 48.1
CSS0039701 Camellia sinensis var. sinensis HOM05D004148 ORTHO05D004709 1.3e-13 79.7 116 45.7
CSS0039756 Camellia sinensis var. sinensis HOM05D004148 ORTHO05D004709 1.3e-13 79.7 116 45.7
Ciclev10027694m.g Citrus clementina HOM05D004148 ORTHO05D004709 1.3e-13 79.7 112 46.4
Migut.D00721 Erythranthe guttata HOM05D004148 ORTHO05D004709 1.8e-13 79.3 115 47.0
Sc06g0008560 Simmondsia chinensis HOM05D004148 ORTHO05D004709 1.8e-13 79.3 118 44.1
Hma1.2p1_0218F.1_g092390 Hydrangea macrophylla HOM05D004148 ORTHO05D004709 2.3e-13 79.0 115 45.2
MSTRG.21311 Avicennia marina HOM05D004148 ORTHO05D004709 3.0e-13 78.6 109 47.7
Eucgr.B03795 Eucalyptus grandis HOM05D004148 ORTHO05D004709 3.0e-13 78.6 115 42.6
Dinv32838 Davidia involucrata HOM05D004148 ORTHO05D004709 3.9e-13 78.2 116 44.0
GSVIVG01022379001 Vitis vinifera HOM05D004148 ORTHO05D004709 3.9e-13 78.2 102 52.0
MELO3C020298.2 Cucumis melo HOM05D004148 ORTHO05D004709 6.7e-13 77.4 102 47.1
CsaV3_3G017640 Cucumis sativus L. HOM05D004148 ORTHO05D004709 6.7e-13 77.4 83 51.8
MD11G1178600 Malus domestica HOM05D004148 ORTHO05D004709 8.7e-13 77.0 115 47.8
arahy.Tifrunner.gnm1.ann1.SF9HJV Arachis hypogaea HOM05D004148 ORTHO05D004709 1.1e-12 76.6 111 41.4
Oeu048810.1 Olea europaea HOM05D004148 ORTHO05D004709 1.1e-12 76.6 114 48.2
QL01p018674 Quercus lobata HOM05D004148 ORTHO05D004709 1.1e-12 76.6 113 46.9
RcHm_v2.0_Chr5g0049541 Rosa chinensis HOM05D004148 ORTHO05D004709 1.1e-12 76.6 74 60.8
Solyc11g071570.3 Solanum lycopersicum HOM05D004148 ORTHO05D004709 1.1e-12 76.6 114 45.6
Sopen11g029250 Solanum pennellii HOM05D004148 ORTHO05D004709 1.1e-12 76.6 114 45.6
TAR623G1397 Trochodendron aralioides HOM05D004148 ORTHO05D004709 1.1e-12 76.6 115 44.3
VMungo1215G0285 Vigna mungo HOM05D004148 ORTHO05D004709 1.9e-12 75.9 114 43.0
MD03G1162400 Malus domestica HOM05D004148 ORTHO05D004709 2.5e-12 75.5 105 49.5
CAN.G439.18 Capsicum annuum HOM05D004148 ORTHO05D004709 3.3e-12 75.1 115 43.5
FAN17G2621 Fragaria x ananassa HOM05D004148 ORTHO05D004709 3.3e-12 75.1 103 50.5
Atru.chr3.3014 Acer truncatum HOM05D004148 ORTHO05D004709 4.3e-12 74.7 101 47.5
FvH4_4g33990 Fragaria vesca HOM05D004148 ORTHO05D004709 4.3e-12 74.7 103 50.5
FAN12G2472 Fragaria x ananassa HOM05D004148 ORTHO05D004709 4.3e-12 74.7 103 50.5
FAN22G0787 Fragaria x ananassa HOM05D004148 ORTHO05D004709 5.7e-12 74.3 103 49.5
Nitab4.5_0000615g0090 Nicotiana tabacum HOM05D004148 ORTHO05D004709 7.4e-12 73.9 117 44.4
CANSAT54G2785 Cannabis sativa HOM05D004148 ORTHO05D004709 1.3e-11 73.2 70 58.6
TWI60G0836 Tripterygium wilfordii HOM05D004148 ORTHO05D004709 1.3e-11 73.2 110 44.5
Phvul.002G053700 Phaseolus vulgaris HOM05D004148 ORTHO05D004709 2.2e-11 72.4 117 38.5
EL10Ac7g16248 Beta vulgaris HOM05D004148 ORTHO05D004709 2.8e-11 72.0 108 42.6
Ah.15g099170 Amaranthus hybridus HOM05D004148 ORTHO05D004709 4.8e-11 71.2 107 43.9
AUR62020189 Chenopodium quinoa HOM05D004148 ORTHO05D004709 6.3e-11 70.9 108 41.7
Potri.009G153300 Populus trichocarpa HOM05D004148 ORTHO05D004709 8.2e-11 70.5 120 40.8
Nitab4.5_0005222g0040 Nicotiana tabacum HOM05D004148 ORTHO05D004709 1.1e-10 70.1 117 42.7
HanXRQChr03g0089821 Helianthus annuus HOM05D004148 ORTHO05D004709 1.4e-10 69.7 113 44.2
Rhsim13G0199700 Rhododendron simsii HOM05D004148 ORTHO05D004709 3.1e-10 68.6 78 50.0
ECA233G2337 Erigeron canadensis HOM05D004148 ORTHO05D004709 4.1e-10 68.2 76 53.9
PSO384G5014 Papaver somniferum HOM05D004148 ORTHO05D004709 5.3e-10 67.8 62 59.7
PSO339G2294 Papaver somniferum HOM05D004148 ORTHO05D004709 9.0e-10 67.0 62 59.7
DCAR_012264 Daucus carota HOM05D000495 ORTHO05D000357 1.2e-09 66.6 62 56.5
MBI11_g07705_MAGBIO Magnolia biondii HOM05D004148 ORTHO05D004709 1.2e-09 66.6 62 58.1
Aqoxy1G00551 Aquilegia oxysepala HOM05D004148 ORTHO05D004709 1.5e-09 66.2 114 37.7
Lsat_1_v5_gn_5_75780 Lactuca sativa HOM05D004148 ORTHO05D004709 2.0e-09 65.9 116 41.4
Peaxi162Scf00217g00627 Petunia axillaris HOM05D004148 ORTHO05D004709 2.6e-09 65.5 113 42.5
ATR0697G020 Amborella trichopoda HOM05D004148 ORTHO05D004709 3.4e-09 65.1 62 50.0
Cc00_g06190 Coffea canephora HOM05D004148 ORTHO05D004709 4.5e-09 64.7 112 40.2
Actinidia12896 Actinidia chinensis HOM05D001400 ORTHO05D001795 5.9e-09 64.3 74 52.7
Lj1g0011831 Lotus japonicus HOM05D004148 ORTHO05D004709 5.9e-09 64.3 111 36.9
HPP92_019532 Vanilla planifolia HOM05D004148 ORTHO05D004709 5.9e-09 64.3 113 39.8
vmacro04063 Vaccinium macrocarpon HOM05D004148 ORTHO05D004709 2.2e-08 62.4 78 48.7
SHI25296 Sapria himalayana HOM05D004148 ORTHO05D004709 5.0e-08 61.2 60 58.3
A06p05890 Brassica napus HOM05D004148 ORTHO05D004709 1.1e-07 60.1 45 71.1
SEGI_35526 Sequoiadendron giganteum HOM05D004148 ORTHO05D004709 2.5e-07 58.9 98 39.8
Hund18819 Selenicereus undatus HOM05D004148 ORTHO05D004709 4.2e-07 58.2 108 34.3
unitig_21.g20312 Utricularia gibba HOM05D004148 ORTHO05D004709 4.2e-07 58.2 59 54.2
SGA_v2.0_scaffold29G12109 Striga asiatica HOM05D004148 ORTHO05D004709 5.5e-07 57.8 56 55.4
Os04g0566900 Oryza sativa ssp. japonica HOM05D004148 ORTHO05D004709 7.2e-07 57.4 56 53.6
Glyma.01G244400 Glycine max HOM05D004148 ORTHO05D004709 6.1e-06 54.3 104 39.4
CDE07G1769 Ceratophyllum demersum HOM05D004148 ORTHO05D004709 7.9e-06 53.9 78 42.3


User provided reference genes

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