Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p02520 Brassica napus HOM05D000341 ORTHO05D010990 8.3e-143 510.4 261 100.0
C03p90310 Brassica napus HOM05D000341 ORTHO05D010990 2.3e-92 342.8 296 68.9
BolC3t21352H Brassica oleracea HOM05D000341 ORTHO05D010990 2.3e-92 342.8 299 68.6
BraA08t32290Z Brassica rapa HOM05D000341 ORTHO05D010990 3.2e-46 189.5 115 91.3
BraA08t32291Z Brassica rapa HOM05D000157 ORTHO05D010990 5.2e-36 155.6 102 77.5
BcaC01g01294 Brassica carinata HOM05D000086 ORTHO05D010990 1.2e-29 134.4 98 82.7
Thhalv10011950m.g Eutrema salsugineum HOM05D000157 ORTHO05D010990 8.6e-23 111.7 71 76.1
Thhalv10011984m.g Eutrema salsugineum HOM05D000157 ORTHO05D010990 8.1e-21 105.1 71 73.2
AL1G59970 Arabidopsis lyrata HOM05D000086 ORTHO05D010990 1.5e-19 100.9 95 53.7
BcaNung06086 Brassica carinata HOM05D000225 ORTHO05D002520 1.5e-19 100.9 58 87.9
AT1G51940 Arabidopsis thaliana HOM05D000225 ORTHO05D002520 2.0e-19 100.5 58 86.2
Carub.0001s4087 Capsella rubella HOM05D000225 ORTHO05D002520 2.6e-19 100.1 58 87.9
CARHR042090 Cardamine hirsuta HOM05D000225 ORTHO05D002520 2.6e-19 100.1 58 87.9
AL1G59980 Arabidopsis lyrata HOM05D000225 ORTHO05D002520 3.4e-19 99.8 58 86.2
BcaC01g01295 Brassica carinata HOM05D000225 ORTHO05D002520 3.4e-19 99.8 58 86.2
A08p02510 Brassica napus HOM05D000225 ORTHO05D002520 3.4e-19 99.8 58 86.2
C03p90320 Brassica napus HOM05D000225 ORTHO05D002520 3.4e-19 99.8 58 86.2
BolC3t21353H Brassica oleracea HOM05D000225 ORTHO05D002520 3.4e-19 99.8 58 86.2
BraA08t32289Z Brassica rapa HOM05D000225 ORTHO05D002520 3.4e-19 99.8 58 86.2
CARHR042080 Cardamine hirsuta HOM05D000157 ORTHO05D010990 3.4e-19 99.8 73 65.8
Thhalv10011293m.g Eutrema salsugineum HOM05D000225 ORTHO05D002520 3.4e-19 99.8 58 86.2
AT1G51930 Arabidopsis thaliana HOM05D000086 ORTHO05D000431 5.8e-19 99.0 71 69.0
BolC6t35810H Brassica oleracea HOM05D000225 ORTHO05D002520 1.7e-18 97.4 57 82.5
Sp1g38580 Schrenkiella parvula HOM05D000225 ORTHO05D002520 2.2e-18 97.1 58 84.5
A06p02170 Brassica napus HOM05D000225 ORTHO05D002520 3.7e-18 96.3 58 82.8
BraA06t23428Z Brassica rapa HOM05D000225 ORTHO05D002520 3.7e-18 96.3 58 82.8
Aa31LG10G2870 Aethionema arabicum HOM05D000225 ORTHO05D002520 6.4e-18 95.5 58 82.8
BcaC08g43354 Brassica carinata HOM05D000225 ORTHO05D002520 3.2e-17 93.2 58 81.0
BcaC08g43953 Brassica carinata HOM05D000157 ORTHO05D010990 4.1e-17 92.8 70 64.3
C06p13520 Brassica napus HOM05D000157 ORTHO05D010990 4.1e-17 92.8 70 64.3
BolC6t36515H Brassica oleracea HOM05D000157 ORTHO05D010990 4.1e-17 92.8 70 64.3
BcaB02g11036 Brassica carinata HOM05D000157 ORTHO05D010990 1.6e-16 90.9 103 52.4
A05p19240 Brassica napus HOM05D000157 ORTHO05D010990 3.5e-16 89.7 70 62.9
BraA05t20829Z Brassica rapa HOM05D000157 ORTHO05D010990 3.5e-16 89.7 70 62.9
QL05p019833 Quercus lobata HOM05D000225 ORTHO05D002520 6.0e-16 89.0 58 77.6
THA.LOC104817947 Tarenaya hassleriana HOM05D000225 ORTHO05D002520 1.0e-15 88.2 58 77.6
CiPaw.02G145600 Carya illinoinensis HOM05D000225 ORTHO05D002520 5.1e-15 85.9 70 64.3
Carub.0001s4086 Capsella rubella HOM05D000157 ORTHO05D010990 6.6e-15 85.5 72 63.9
Lalb_Chr25g0280171 Lupinus albus HOM05D000225 ORTHO05D002520 8.6e-15 85.1 58 72.4
TPR.G26942 Trifolium pratense HOM05D000225 ORTHO05D002520 8.6e-15 85.1 58 74.1
Sabra01G0151800 Salix brachista HOM05D000225 ORTHO05D002520 1.1e-14 84.7 58 75.9
Medtr8g014500 Medicago truncatula HOM05D000225 ORTHO05D002520 1.5e-14 84.3 58 72.4
C06p07180 Brassica napus HOM05D000225 ORTHO05D002520 1.9e-14 84.0 85 55.3
Phvul.010G145100 Phaseolus vulgaris HOM05D000225 ORTHO05D002520 1.9e-14 84.0 58 72.4
VMungo0331G1972 Vigna mungo HOM05D000225 ORTHO05D002520 1.9e-14 84.0 58 72.4
FvH4_6g32430 Fragaria vesca HOM05D000225 ORTHO05D002520 2.5e-14 83.6 58 74.1
FAN05G1726 Fragaria x ananassa HOM05D000225 ORTHO05D002520 2.5e-14 83.6 58 74.1
FAN14G1058 Fragaria x ananassa HOM05D000225 ORTHO05D002520 2.5e-14 83.6 58 74.1
Potri.001G190200 Populus trichocarpa HOM05D000225 ORTHO05D002520 2.5e-14 83.6 58 74.1
Cfa003642 Carpinus fangiana HOM05D000225 ORTHO05D002520 3.3e-14 83.2 58 74.1
Ciclev10025091m.g Citrus clementina HOM05D000225 ORTHO05D002520 3.3e-14 83.2 58 74.1
Lj3g0014594 Lotus japonicus HOM05D000225 ORTHO05D002520 3.3e-14 83.2 58 70.7
Manes.04G134300 Manihot esculenta HOM05D000225 ORTHO05D002520 7.3e-14 82.0 58 74.1
Psat4g197320 Pisum sativum HOM05D000225 ORTHO05D002520 7.3e-14 82.0 58 69.0
CANSAT01G1837 Cannabis sativa HOM05D000225 ORTHO05D002520 9.5e-14 81.6 58 69.0
ClCG07G013330 Citrullus lanatus HOM05D000225 ORTHO05D002520 9.5e-14 81.6 58 72.4
CsaV3_3G023580 Cucumis sativus L. HOM05D000225 ORTHO05D002520 9.5e-14 81.6 58 72.4
TWI75G0519 Tripterygium wilfordii HOM05D000225 ORTHO05D002520 9.5e-14 81.6 70 61.4
Glyma.08G200800 Glycine max HOM05D000225 ORTHO05D002520 1.6e-13 80.9 58 69.0
Prupe.3G058700 Prunus persica HOM05D000225 ORTHO05D002520 1.6e-13 80.9 58 72.4
Sed0025043 Sechium edule HOM05D000225 ORTHO05D002520 1.6e-13 80.9 58 72.4
Glyma.07G015300 Glycine max HOM05D000225 ORTHO05D002520 2.1e-13 80.5 58 70.7
Hma1.2p1_1232F.1_g268940 Hydrangea macrophylla HOM05D000225 ORTHO05D002520 2.1e-13 80.5 58 72.4
Atru.chr1.3531 Acer truncatum HOM05D000225 ORTHO05D002520 2.8e-13 80.1 58 69.0
MELO3C013002.2 Cucumis melo HOM05D000225 ORTHO05D002520 2.8e-13 80.1 58 70.7
Eucgr.J02935 Eucalyptus grandis HOM05D000225 ORTHO05D002520 2.8e-13 80.1 58 70.7
FAN02G1214 Fragaria x ananassa HOM05D000225 ORTHO05D002520 2.8e-13 80.1 58 70.7
FAN09G3147 Fragaria x ananassa HOM05D000225 ORTHO05D002520 2.8e-13 80.1 58 70.7
Lalb_Chr01g0013171 Lupinus albus HOM05D000225 ORTHO05D002520 2.8e-13 80.1 58 69.0
Ca_23264_v3 Cicer arietinum L. HOM05D000225 ORTHO05D002520 4.7e-13 79.3 58 67.2
TWI18G1389 Tripterygium wilfordii HOM05D000225 ORTHO05D002520 4.7e-13 79.3 58 69.0
Aqoxy7G03979 Aquilegia oxysepala HOM05D000225 ORTHO05D002520 6.2e-13 79.0 58 69.0
MD17G1183700 Malus domestica HOM05D000225 ORTHO05D002520 6.2e-13 79.0 58 70.7
GSVIVG01016975001 Vitis vinifera HOM05D000225 ORTHO05D002520 8.1e-13 78.6 58 70.7
RcHm_v2.0_Chr2g0140581 Rosa chinensis HOM05D000225 ORTHO05D002520 1.1e-12 78.2 58 69.0
Dinv30434 Davidia involucrata HOM05D000225 ORTHO05D002520 1.8e-12 77.4 58 70.7
Lj9C513T18 Lonicera japonica HOM05D000225 ORTHO05D002520 2.3e-12 77.0 58 70.7
Cc04_g02520 Coffea canephora HOM05D000225 ORTHO05D002520 3.1e-12 76.6 58 65.5
Gohir.A02G117300 Gossypium hirsutum HOM05D000225 ORTHO05D002520 3.1e-12 76.6 58 65.5
Nn6g35326 Nelumbo nucifera HOM05D000225 ORTHO05D002520 3.1e-12 76.6 58 69.0
Rhsim08G0227900 Rhododendron simsii HOM05D000225 ORTHO05D002520 3.1e-12 76.6 58 67.2
CiPaw.01G231100 Carya illinoinensis HOM05D000225 ORTHO05D002520 5.2e-12 75.9 58 65.5
Thecc.06G100400 Theobroma cacao HOM05D000225 ORTHO05D002520 5.2e-12 75.9 58 65.5
Ca_23273_v3 Cicer arietinum L. HOM05D000225 ORTHO05D002520 6.8e-12 75.5 56 66.1
Nn8g39069 Nelumbo nucifera HOM05D000225 ORTHO05D002520 1.2e-11 74.7 58 67.2
TAR383G0597 Trochodendron aralioides HOM05D000225 ORTHO05D002520 1.2e-11 74.7 58 69.0
Duzib235G1437 Durio zibethinus HOM05D000225 ORTHO05D002520 1.5e-11 74.3 58 65.5
Gohir.D03G057800 Gossypium hirsutum HOM05D000225 ORTHO05D002520 1.5e-11 74.3 58 63.8
Lsat_1_v5_gn_4_98620 Lactuca sativa HOM05D000225 ORTHO05D002520 1.5e-11 74.3 58 69.0
TAR636G1254 Trochodendron aralioides HOM05D000225 ORTHO05D002520 1.5e-11 74.3 58 65.5
Lalb_Chr22g0351571 Lupinus albus HOM05D000225 ORTHO05D002520 2.0e-11 73.9 56 66.1
MD09G1202500 Malus domestica HOM05D000225 ORTHO05D002520 2.0e-11 73.9 58 69.0
ECA232G2392 Erigeron canadensis HOM05D000225 ORTHO05D002520 2.6e-11 73.6 58 65.5
Gorai.003G061600 Gossypium raimondii HOM05D000225 ORTHO05D002520 4.4e-11 72.8 58 62.1
PGR102G3202 Punica granatum HOM05D000225 ORTHO05D002520 5.8e-11 72.4 58 62.1
DCAR_007585 Daucus carota HOM05D000225 ORTHO05D002520 7.6e-11 72.0 58 65.5
MBI04_g37499_MAGBIO Magnolia biondii HOM05D000225 ORTHO05D002520 7.6e-11 72.0 58 65.5
HanXRQChr05g0139801 Helianthus annuus HOM05D000225 ORTHO05D002520 1.3e-10 71.2 58 62.1
vmacro18849 Vaccinium macrocarpon HOM05D000225 ORTHO05D002520 1.3e-10 71.2 57 63.2
CSS0007964 Camellia sinensis var. sinensis HOM05D000225 ORTHO05D002520 2.9e-10 70.1 58 62.1
CSS0039164 Camellia sinensis var. sinensis HOM05D000225 ORTHO05D002520 2.9e-10 70.1 58 62.1
Hund00696 Selenicereus undatus HOM05D000225 ORTHO05D002520 3.8e-10 69.7 58 65.5
CSS0022779 Camellia sinensis var. sinensis HOM05D000225 ORTHO05D002520 4.9e-10 69.3 70 55.7
HanXRQChr02g0032261 Helianthus annuus HOM05D000225 ORTHO05D002520 8.4e-10 68.6 58 58.6
AUR62022212 Chenopodium quinoa HOM05D000225 ORTHO05D002520 1.1e-09 68.2 58 63.8
AUR62031926 Chenopodium quinoa HOM05D000225 ORTHO05D002520 1.1e-09 68.2 58 63.8
arahy.Tifrunner.gnm1.ann1.ULK9GC Arachis hypogaea HOM05D000225 ORTHO05D002520 1.4e-09 67.8 57 57.9
EL10Ac9g21192 Beta vulgaris HOM05D000225 ORTHO05D002520 2.4e-09 67.0 58 62.1
Oeu017124.1 Olea europaea HOM05D000225 ORTHO05D002520 3.2e-09 66.6 47 72.3
PSO210G4081 Papaver somniferum HOM05D000225 ORTHO05D002520 3.2e-09 66.6 58 60.3
PSO210G5196 Papaver somniferum HOM05D000225 ORTHO05D002520 3.2e-09 66.6 58 60.3
Actinidia32101 Actinidia chinensis HOM05D000225 ORTHO05D002520 5.4e-09 65.9 58 60.3
arahy.Tifrunner.gnm1.ann1.IGX33D Arachis hypogaea HOM05D000225 ORTHO05D002520 5.4e-09 65.9 57 56.1
Lsat_1_v5_gn_1_36801 Lactuca sativa HOM05D000225 ORTHO05D002520 5.4e-09 65.9 58 55.2
Peaxi162Scf00038g01033 Petunia axillaris HOM05D000225 ORTHO05D002520 5.4e-09 65.9 58 60.3
ATR0705G083 Amborella trichopoda HOM05D000225 ORTHO05D002520 7.1e-09 65.5 58 56.9
Ah.01g005780 Amaranthus hybridus HOM05D000225 ORTHO05D002520 9.2e-09 65.1 58 60.3
Nitab4.5_0008646g0010 Nicotiana tabacum HOM05D000225 ORTHO05D002520 1.6e-08 64.3 58 62.1
VMungo1080G1673 Vigna mungo HOM05D000225 ORTHO05D002520 1.6e-08 64.3 50 64.0
Migut.I00894 Erythranthe guttata HOM05D000225 ORTHO05D002520 2.1e-08 63.9 60 60.0
SalBow2G2057 Salvia bowleyana HOM05D000225 ORTHO05D002520 2.1e-08 63.9 48 68.8
Solyc03g121050.3 Solanum lycopersicum HOM05D000225 ORTHO05D002520 2.1e-08 63.9 58 62.1
Sopen03g039880 Solanum pennellii HOM05D000225 ORTHO05D002520 2.1e-08 63.9 58 62.1
PGSC0003DMG400002526 Solanum tuberosum HOM05D000225 ORTHO05D002520 2.1e-08 63.9 58 62.1
SGA_v2.0_scaffold66G22526 Striga asiatica HOM05D000225 ORTHO05D002520 2.1e-08 63.9 48 68.8
HPP92_005561 Vanilla planifolia HOM05D000225 ORTHO05D002520 2.1e-08 63.9 58 55.2
CAN.G1143.16 Capsicum annuum HOM05D000225 ORTHO05D002520 2.7e-08 63.5 58 62.1
Nitab4.5_0004969g0020 Nicotiana tabacum HOM05D000225 ORTHO05D002520 3.5e-08 63.2 58 60.3
Glyma.15G019800 Glycine max HOM05D000225 ORTHO05D002520 7.8e-08 62.0 50 60.0
AL7G48100 Arabidopsis lyrata HOM05D010307 ORTHO05D010990 1.0e-07 61.6 70 50.0
Glyma.13G354400 Glycine max HOM05D000225 ORTHO05D002520 1.3e-07 61.2 50 58.0
AT5G41430 Arabidopsis thaliana HOM05D000157 ORTHO05D010990 2.3e-07 60.5 58 51.7
Phvul.005G165900 Phaseolus vulgaris HOM05D000225 ORTHO05D002520 2.3e-07 60.5 50 60.0
Os01g0741200 Oryza sativa ssp. japonica HOM05D000225 ORTHO05D002520 3.0e-07 60.1 59 55.9
SEGI_31176 Sequoiadendron giganteum HOM05D000225 ORTHO05D002520 3.9e-07 59.7 70 48.6
Actinidia21717 Actinidia chinensis HOM05D000225 ORTHO05D002520 5.1e-07 59.3 47 59.6
C03p90300 Brassica napus HOM05D000341 ORTHO05D000557 5.1e-07 59.3 51 56.9
Thhalv10027946m.g Eutrema salsugineum HOM05D000157 ORTHO05D010990 2.5e-06 57.0 57 52.6
CDE05G1712 Ceratophyllum demersum HOM05D000225 ORTHO05D026918 9.6e-06 55.1 36 69.4


User provided reference genes

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