Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 2.1e-92 342.4 180 100.0
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 2.1e-92 342.4 180 100.0
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 1.0e-91 340.1 180 98.9
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 1.8e-91 339.3 180 98.9
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 1.8e-91 339.3 180 98.9
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 1.6e-89 332.8 180 96.7
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 9.9e-87 323.6 183 92.9
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 5.5e-85 317.8 183 91.8
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 4.2e-77 291.6 184 85.3
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 1.2e-76 290.0 183 85.2
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 1.3e-75 286.6 181 85.1
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 8.7e-75 283.9 184 83.7
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 4.3e-74 281.6 179 84.4
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 7.4e-74 280.8 177 84.2
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 1.3e-73 280.0 175 85.1
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 3.7e-73 278.5 177 83.6
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 6.3e-73 277.7 181 82.3
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 6.9e-72 274.2 177 80.8
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 2.6e-71 272.3 177 79.7
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 3.4e-71 271.9 181 81.2
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 1.7e-70 269.6 180 79.4
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 1.7e-70 269.6 179 78.8
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 2.2e-70 269.2 179 80.4
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 3.8e-70 268.5 177 80.2
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 1.1e-69 266.9 178 79.8
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 2.5e-69 265.8 177 76.8
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 4.2e-69 265.0 181 79.6
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 5.5e-69 264.6 177 77.4
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 1.2e-68 263.5 177 78.5
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 1.6e-68 263.1 177 77.4
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 3.6e-68 261.9 177 76.3
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 4.6e-68 261.5 156 87.2
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 6.1e-68 261.2 177 78.0
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 6.1e-68 261.2 177 76.8
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 7.9e-68 260.8 177 76.3
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 1.0e-67 260.4 177 78.0
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 1.3e-67 260.0 171 78.9
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 1.8e-67 259.6 177 78.0
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 1.8e-67 259.6 177 76.3
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.3e-67 259.2 177 75.7
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 3.0e-67 258.8 177 76.3
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 3.0e-67 258.8 177 75.7
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 3.0e-67 258.8 177 75.7
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 3.9e-67 258.5 177 76.8
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 6.7e-67 257.7 178 76.4
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 6.7e-67 257.7 178 76.4
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 8.7e-67 257.3 181 74.6
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 1.5e-66 256.5 177 75.1
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 2.5e-66 255.8 166 80.1
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 2.5e-66 255.8 177 76.8
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 4.3e-66 255.0 177 74.6
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 5.7e-66 254.6 177 76.3
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 7.4e-66 254.2 177 76.3
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 1.3e-65 253.4 185 73.5
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 1.3e-65 253.4 178 74.2
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 1.6e-65 253.1 180 72.2
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 1.6e-65 253.1 177 75.7
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 2.2e-65 252.7 175 77.1
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 2.2e-65 252.7 180 74.4
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 2.2e-65 252.7 177 75.7
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 3.7e-65 251.9 185 73.0
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 3.7e-65 251.9 185 73.0
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 4.8e-65 251.5 185 71.9
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 4.8e-65 251.5 185 73.0
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 6.3e-65 251.1 172 76.7
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 8.2e-65 250.8 183 77.0
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 1.1e-64 250.4 177 78.0
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 1.4e-64 250.0 176 75.0
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.8e-64 249.6 178 73.0
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 1.8e-64 249.6 185 72.4
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 3.1e-64 248.8 178 74.7
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 4.1e-64 248.4 172 75.6
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 4.1e-64 248.4 179 74.9
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 5.3e-64 248.1 178 75.3
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 5.3e-64 248.1 178 75.3
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 6.9e-64 247.7 177 74.0
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.2e-63 246.9 178 73.0
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 1.2e-63 246.9 178 74.2
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 1.5e-63 246.5 180 72.8
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 2.0e-63 246.1 180 73.9
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 2.6e-63 245.7 178 76.4
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 4.5e-63 245.0 174 75.3
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 5.9e-63 244.6 193 70.5
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 7.7e-63 244.2 181 71.8
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 7.7e-63 244.2 179 71.5
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 7.7e-63 244.2 174 74.1
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 1.0e-62 243.8 181 71.8
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 1.0e-62 243.8 181 73.5
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.2e-62 242.7 178 74.2
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 8.5e-62 240.7 177 72.9
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 4.2e-61 238.4 176 73.3
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 7.2e-61 237.7 171 74.9
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 7.2e-61 237.7 177 72.3
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 7.2e-61 237.7 167 74.9
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 7.2e-61 237.7 174 71.8
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 1.6e-60 236.5 174 74.1
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 2.1e-60 236.1 183 70.5
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 2.7e-60 235.7 175 72.0
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 3.6e-60 235.3 180 68.9
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 3.6e-60 235.3 177 71.2
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 1.0e-59 233.8 178 71.3
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 1.4e-59 233.4 171 72.5
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 1.4e-59 233.4 171 72.5
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 2.3e-59 232.6 177 72.3
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 3.0e-59 232.3 179 68.2
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 3.0e-59 232.3 181 70.7
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 3.0e-59 232.3 181 70.7
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 3.9e-59 231.9 178 69.1
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 8.8e-59 230.7 174 68.4
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 8.8e-59 230.7 178 68.0
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 4.4e-58 228.4 176 71.6
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 7.4e-58 227.6 181 69.6
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 2.8e-57 225.7 177 69.5
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 3.7e-57 225.3 177 69.5
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 6.3e-57 224.6 173 71.1
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 6.3e-57 224.6 180 69.4
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 3.1e-56 222.2 178 68.0
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 1.5e-55 219.9 184 67.4
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 2.0e-55 219.5 171 69.0
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 1.7e-54 216.5 182 66.5
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 5.0e-54 214.9 152 70.4
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 6.5e-54 214.5 173 67.6
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 1.4e-53 213.4 169 68.0
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 1.4e-53 213.4 130 83.1
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 1.6e-52 209.9 178 65.2
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 5.2e-51 204.9 180 63.9
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 7.4e-50 201.1 159 69.2
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 9.7e-50 200.7 194 60.8
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 1.7e-49 199.9 119 80.7
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 1.7e-49 199.9 180 60.6
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 2.8e-49 199.1 251 50.6
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 7.7e-47 191.0 143 64.3
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 6.5e-46 188.0 178 62.9
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 8.0e-44 181.0 182 56.0
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 4.0e-43 178.7 192 57.3
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 5.2e-43 178.3 193 58.0
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 6.7e-43 177.9 172 55.8
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 3.3e-42 175.6 173 54.3
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 1.7e-38 163.3 180 51.1
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 2.2e-38 162.9 148 65.5
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 9.4e-37 157.5 132 71.2
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.2e-36 157.1 95 78.9
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 5.7e-34 148.3 84 84.5
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 5.7e-34 148.3 98 74.5
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 6.3e-33 144.8 174 50.0
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 5.4e-32 141.7 87 81.6
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 5.9e-31 138.3 110 73.6
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 5.9e-31 138.3 110 73.6
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.0e-30 137.5 176 48.3
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 2.9e-30 136.0 113 62.8
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 1.6e-28 130.2 111 65.8
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 1.0e-27 127.5 132 57.6
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 3.7e-25 119.0 127 52.8
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 1.1e-21 107.5 118 44.9
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 2.3e-19 99.8 103 45.6
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 1.2e-18 97.4 79 70.9
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 8.3e-17 91.3 86 57.0
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 8.3e-17 91.3 139 39.6
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 9.2e-16 87.8 92 55.4
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.0e-14 84.3 44 88.6
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 1.1e-11 74.3 80 51.2
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 2.3e-11 73.2 68 57.4
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 1.2e-10 70.9 106 36.8
A06p00520 Brassica napus HOM05D004222 ORTHO05D004982 1.5e-10 70.5 65 63.1
Nitab4.5_0018373g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 5.4e-08 62.0 85 43.5


User provided reference genes

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