Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 0.0e+00 1183.3 603 100.0
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 0.0e+00 1161.0 603 98.0
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 0.0e+00 1158.7 603 97.5
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 0.0e+00 1157.1 603 97.3
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 0.0e+00 1155.6 603 97.2
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 0.0e+00 1129.8 603 95.4
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 0.0e+00 1076.6 603 91.4
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 6.2e-311 1070.1 606 90.6
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 7.0e-302 1040.0 604 87.4
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 5.5e-299 1030.4 605 87.3
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 5.2e-297 1023.8 603 86.9
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 1.4e-294 1015.8 605 85.6
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 5.0e-276 954.1 611 81.0
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 4.1e-254 881.3 615 73.7
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 1.6e-245 852.8 608 71.5
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 1.1e-235 820.1 615 66.7
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 9.6e-235 817.0 613 66.4
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 2.1e-234 815.8 616 66.9
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 2.8e-234 815.5 616 67.9
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 8.1e-234 813.9 613 67.9
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 3.1e-233 812.0 624 66.2
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 3.1e-233 812.0 616 67.2
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 6.9e-233 810.8 623 65.5
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 1.2e-232 810.1 615 67.5
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 1.2e-232 810.1 613 65.6
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 3.4e-232 808.5 620 67.4
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 4.5e-232 808.1 617 65.6
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 7.6e-232 807.4 613 66.6
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 7.6e-232 807.4 613 66.7
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 9.9e-232 807.0 615 67.8
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 9.9e-232 807.0 615 67.8
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 1.7e-231 806.2 609 66.2
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 2.9e-231 805.4 614 66.0
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 3.8e-231 805.1 614 66.1
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 8.4e-231 803.9 613 66.6
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 1.9e-230 802.7 615 67.5
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 3.2e-230 802.0 610 67.0
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 4.2e-230 801.6 615 65.4
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 5.4e-230 801.2 617 66.3
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 1.2e-229 800.0 614 64.5
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 2.1e-229 799.3 618 64.9
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 3.5e-229 798.5 613 66.7
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 4.6e-229 798.1 620 65.2
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 1.0e-228 797.0 616 66.4
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 1.3e-228 796.6 615 65.5
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 6.7e-228 794.3 614 66.0
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 1.5e-227 793.1 617 65.3
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 1.9e-227 792.7 616 65.3
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 3.3e-227 792.0 620 64.8
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 3.3e-227 792.0 613 65.6
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 7.4e-227 790.8 617 64.3
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 1.5e-224 783.1 615 64.6
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 7.6e-224 780.8 617 65.0
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 7.6e-224 780.8 613 64.8
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 1.7e-223 779.6 614 65.3
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 4.9e-223 778.1 618 64.6
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 1.1e-222 776.9 613 64.8
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 1.9e-222 776.2 601 64.7
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 2.5e-222 775.8 616 64.3
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 2.5e-222 775.8 626 63.3
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 1.0e-220 770.4 613 63.6
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 3.3e-219 765.4 595 64.0
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 3.3e-219 765.4 612 63.9
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 4.3e-219 765.0 615 63.7
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 5.6e-219 764.6 615 63.1
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 5.6e-219 764.6 617 62.2
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 5.6e-219 764.6 690 58.4
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 2.1e-218 762.7 615 62.9
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 8.2e-218 760.8 604 63.7
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 4.0e-217 758.4 606 64.2
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 9.0e-217 757.3 608 63.0
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 3.2e-214 748.8 602 62.5
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 1.6e-213 746.5 566 64.5
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 2.7e-213 745.7 571 65.3
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 4.6e-213 745.0 742 55.1
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 8.7e-212 740.7 602 63.6
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 1.4e-209 733.4 612 61.3
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 9.0e-209 730.7 612 61.1
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 2.5e-206 722.6 610 61.6
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 3.2e-206 722.2 573 63.2
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 2.3e-204 716.1 610 61.1
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 4.3e-203 711.8 607 60.3
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 3.7e-202 708.8 574 65.2
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 4.8e-202 708.4 549 64.8
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 8.2e-202 707.6 588 61.6
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 1.1e-201 707.2 548 65.1
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 2.1e-189 666.4 612 57.4
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 3.8e-183 645.6 615 55.0
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 9.7e-179 630.9 505 63.6
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 9.4e-174 614.4 616 53.2
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 4.7e-173 612.1 608 55.9
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 5.9e-168 595.1 680 47.8
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 1.7e-159 567.0 527 56.4
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 1.4e-153 547.4 686 47.7
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 4.1e-145 519.2 489 57.3
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 7.3e-142 508.4 502 53.4
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 4.1e-137 492.7 387 65.1
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 1.6e-133 480.7 387 62.5
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 6.2e-133 478.8 362 65.7
SHI04053 Sapria himalayana HOM05D005117 ORTHO05D005956 1.4e-121 441.0 429 56.6
TAR381G0825 Trochodendron aralioides HOM05D005117 ORTHO05D005956 1.2e-120 438.0 361 63.4
Haze_13981 Corylus avellana HOM05D005117 ORTHO05D005956 8.7e-111 405.2 366 59.3
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 1.1e-102 378.3 647 37.4
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 1.9e-102 377.5 322 60.2
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 1.4e-100 371.3 394 53.0
Ca_30189_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 3.4e-99 366.7 258 69.0
Haze_13982 Corylus avellana HOM05D005117 ORTHO05D005956 2.9e-98 363.6 258 69.4
Atru.chr13.2543 Acer truncatum HOM05D005117 ORTHO05D005956 5.7e-94 349.4 245 69.4
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 5.3e-92 342.8 257 66.5
PGSC0003DMG402019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 1.5e-83 314.7 232 66.8
MCO13G430 Micromonas commoda HOM05D005117 ORTHO05D005956 5.5e-81 306.2 641 34.2
Atru.chr13.2569 Acer truncatum HOM05D005117 ORTHO05D005956 5.5e-73 279.6 179 72.6
RcHm_v2.0_Chr6g0249901 Rosa chinensis HOM05D005117 ORTHO05D005956 1.2e-54 218.8 221 54.8
RcHm_v2.0_Chr6g0250191 Rosa chinensis HOM05D005117 ORTHO05D005956 1.3e-53 215.3 226 52.7
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 4.1e-44 183.7 202 50.0
Zm00001eb084470 Zea mays HOM05D005117 ORTHO05D005956 7.8e-43 179.5 159 57.9
FAN24G1044 Fragaria x ananassa HOM05D005117 ORTHO05D005956 3.3e-41 174.1 112 73.2
RcHm_v2.0_Chr6g0250151 Rosa chinensis HOM05D005117 ORTHO05D005956 5.6e-41 173.3 104 79.8
RcHm_v2.0_Chr6g0250001 Rosa chinensis HOM05D005117 ORTHO05D005956 1.6e-40 171.8 109 75.2
RcHm_v2.0_Chr6g0249891 Rosa chinensis HOM05D005117 ORTHO05D005956 4.0e-39 167.2 112 70.5
AUR62038541 Chenopodium quinoa HOM05D005117 ORTHO05D005956 9.8e-38 162.5 111 68.5
RcHm_v2.0_Chr6g0250171 Rosa chinensis HOM05D005117 ORTHO05D005956 1.7e-37 161.8 112 68.8
A06p32710 Brassica napus HOM05D005117 ORTHO05D005956 2.4e-36 157.9 81 93.8
BraA06t26200Z Brassica rapa HOM05D005117 ORTHO05D005956 2.4e-36 157.9 81 93.8
SHI04054 Sapria himalayana HOM05D005117 ORTHO05D005956 2.0e-35 154.8 104 69.2
RcHm_v2.0_Chr6g0249861 Rosa chinensis HOM05D005117 ORTHO05D005956 1.2e-30 139.0 115 61.7
RcHm_v2.0_Chr6g0250321 Rosa chinensis HOM05D005117 ORTHO05D005956 4.1e-28 130.6 100 63.0
FAN27G2074 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.6e-27 128.6 82 75.6
RcHm_v2.0_Chr6g0249251 Rosa chinensis HOM05D005117 ORTHO05D005956 1.6e-27 128.6 131 52.7
RcHm_v2.0_Chr6g0249761 Rosa chinensis HOM05D005117 ORTHO05D005956 2.7e-27 127.9 87 71.3
RcHm_v2.0_Chr6g0249911 Rosa chinensis HOM05D005117 ORTHO05D005956 1.2e-24 119.0 72 79.2
Cfa026610 Carpinus fangiana HOM05D005117 ORTHO05D005956 1.6e-24 118.6 506 23.1
RcHm_v2.0_Chr6g0249991 Rosa chinensis HOM05D005117 ORTHO05D005956 1.2e-22 112.5 120 52.5
RcHm_v2.0_Chr6g0249981 Rosa chinensis HOM05D005117 ORTHO05D005956 9.9e-22 109.4 68 72.1
Rhsim03G0007800 Rhododendron simsii HOM05D000003 ORTHO05D005956 5.4e-20 103.6 150 42.7
RcHm_v2.0_Chr6g0250221 Rosa chinensis HOM05D005117 ORTHO05D005956 3.5e-19 100.9 66 72.7
RcHm_v2.0_Chr6g0249871 Rosa chinensis HOM05D005117 ORTHO05D005956 1.0e-18 99.4 55 78.2
AagrBONN_evm.TU.Sc2ySwM_340.40 Anthoceros agrestis HOM05D005117 ORTHO05D005956 6.2e-16 90.1 83 51.8
RcHm_v2.0_Chr6g0249791 Rosa chinensis HOM05D005117 ORTHO05D005956 4.9e-13 80.5 55 72.7
CDE05G1587 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 6.4e-13 80.1 147 38.1
Cpa.g.sc48.107 Carica papaya HOM05D005943 ORTHO05D007328 4.6e-11 73.9 182 28.6
Sed0027178 Sechium edule HOM05D005943 ORTHO05D007328 6.0e-11 73.6 182 28.0
RcHm_v2.0_Chr6g0249851 Rosa chinensis HOM05D005117 ORTHO05D005956 7.8e-11 73.2 41 75.6
Sed0012379 Sechium edule HOM05D005943 ORTHO05D007328 7.8e-11 73.2 182 28.6
RcHm_v2.0_Chr6g0249241 Rosa chinensis HOM05D005117 ORTHO05D005956 3.3e-09 67.8 40 72.5
SHI49642 Sapria himalayana HOM05D005117 ORTHO05D005956 1.3e-08 65.9 41 68.3
Rhsim05G0137500 Rhododendron simsii HOM05D005943 ORTHO05D007328 2.1e-08 65.1 202 25.7
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 2.1e-08 65.1 185 27.0
Cc10_g13530 Coffea canephora HOM05D005117 ORTHO05D005956 2.8e-08 64.7 41 68.3
Rhsim09G0011400 Rhododendron simsii HOM05D005117 ORTHO05D005956 3.6e-08 64.3 47 61.7
BolC5t30574H Brassica oleracea HOM05D002136 ORTHO05D005956 4.8e-08 63.9 38 78.9
Haze_26177 Corylus avellana HOM05D005943 ORTHO05D007328 1.1e-07 62.8 183 23.5


User provided reference genes

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