Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p37170 Brassica napus HOM05D001630 ORTHO05D033249 3.1e-35 151.4 82 100.0
BolC6t39543H Brassica oleracea HOM05D001630 ORTHO05D002505 9.9e-34 146.4 81 97.5
BcaC08g46510 Brassica carinata HOM05D001630 ORTHO05D002505 4.9e-33 144.1 81 96.3
BcaC08g46512 Brassica carinata HOM05D001630 ORTHO05D002505 4.9e-33 144.1 81 96.3
C06p44840 Brassica napus HOM05D001630 ORTHO05D002505 4.9e-33 144.1 81 96.3
C06p44860 Brassica napus HOM05D001630 ORTHO05D002505 4.9e-33 144.1 81 96.3
BolC6t39545H Brassica oleracea HOM05D001630 ORTHO05D002505 4.9e-33 144.1 81 96.3
A07p37180 Brassica napus HOM05D001630 ORTHO05D002505 1.4e-32 142.5 81 95.1
BraA07t31279Z Brassica rapa HOM05D001630 ORTHO05D002505 1.4e-32 142.5 81 95.1
BcaB05g24611 Brassica carinata HOM05D001630 ORTHO05D002505 1.6e-31 139.0 81 90.1
A02p16860 Brassica napus HOM05D001630 ORTHO05D002505 4.6e-31 137.5 81 91.4
BcaC03g15232 Brassica carinata HOM05D001630 ORTHO05D002505 8.7e-30 133.3 81 87.7
C02p28180 Brassica napus HOM05D001630 ORTHO05D002505 8.7e-30 133.3 81 87.7
BolC2t08862H Brassica oleracea HOM05D001630 ORTHO05D002505 8.7e-30 133.3 81 87.7
BraA02t06740Z Brassica rapa HOM05D001630 ORTHO05D002505 8.7e-30 133.3 81 88.9
AL2G30210 Arabidopsis lyrata HOM05D001630 ORTHO05D002505 3.6e-28 127.9 85 83.5
Sp5g25950 Schrenkiella parvula HOM05D001630 ORTHO05D002505 1.8e-27 125.6 84 84.5
AT1G70770 Arabidopsis thaliana HOM05D001630 ORTHO05D002505 5.3e-27 124.0 85 81.2
Carub.0002s1751 Capsella rubella HOM05D001630 ORTHO05D002505 3.4e-26 121.3 81 77.8
CARHR064030 Cardamine hirsuta HOM05D001630 ORTHO05D002505 4.5e-26 120.9 85 82.4
AL2G10020 Arabidopsis lyrata HOM05D001630 ORTHO05D002505 9.3e-24 113.2 80 80.0
Aa31LG4G10220 Aethionema arabicum HOM05D001630 ORTHO05D002505 7.9e-23 110.2 88 71.6
BolC6t38716H Brassica oleracea HOM05D001704 ORTHO05D001605 1.3e-22 109.4 78 76.9
Thhalv10018292m.g Eutrema salsugineum HOM05D001630 ORTHO05D002505 6.7e-22 107.1 85 74.1
Sp1g20630 Schrenkiella parvula HOM05D001630 ORTHO05D002505 6.9e-19 97.1 84 64.3
CARHR030430 Cardamine hirsuta HOM05D001630 ORTHO05D033249 3.4e-18 94.7 77 70.1
BcaC05g26224 Brassica carinata HOM05D001630 ORTHO05D002505 3.8e-17 91.3 82 63.4
BolC5t30935H Brassica oleracea HOM05D001630 ORTHO05D002505 3.8e-17 91.3 82 63.4
BcaB03g14163 Brassica carinata HOM05D001630 ORTHO05D002505 1.1e-16 89.7 84 63.1
BcaB03g14164 Brassica carinata HOM05D001630 ORTHO05D002505 1.1e-16 89.7 84 63.1
C05p22380 Brassica napus HOM05D001630 ORTHO05D002505 1.9e-16 89.0 82 62.2
A09p41590 Brassica napus HOM05D001630 ORTHO05D002505 3.2e-16 88.2 82 62.2
BraA09t39650Z Brassica rapa HOM05D001630 ORTHO05D002505 3.2e-16 88.2 82 62.2
THA.LOC104823001 Tarenaya hassleriana HOM05D001630 ORTHO05D002505 4.2e-16 87.8 82 63.4
A07p13970 Brassica napus HOM05D001630 ORTHO05D002505 2.1e-15 85.5 84 60.7
BraA07t29153Z Brassica rapa HOM05D001630 ORTHO05D002505 2.1e-15 85.5 84 60.7
Thhalv10007115m.g Eutrema salsugineum HOM05D001630 ORTHO05D002505 2.7e-15 85.1 84 57.1
CARHR133680 Cardamine hirsuta HOM05D001630 ORTHO05D002505 7.9e-15 83.6 68 72.1
AT1G23170 Arabidopsis thaliana HOM05D001630 ORTHO05D002505 1.0e-14 83.2 88 59.1
CARHR023630 Cardamine hirsuta HOM05D001630 ORTHO05D002505 1.0e-14 83.2 86 60.5
Carub.0001s2274 Capsella rubella HOM05D001630 ORTHO05D002505 2.3e-14 82.0 87 57.5
AL4G24460 Arabidopsis lyrata HOM05D001630 ORTHO05D002505 3.9e-14 81.3 81 61.7
BcaB07g31711 Brassica carinata HOM05D001630 ORTHO05D002505 3.9e-14 81.3 61 68.9
C09p13520 Brassica napus HOM05D001630 ORTHO05D002505 3.9e-14 81.3 62 72.6
AL1G36840 Arabidopsis lyrata HOM05D001630 ORTHO05D002505 5.1e-14 80.9 88 58.0
BolC9t54243H Brassica oleracea HOM05D001630 ORTHO05D002505 1.5e-13 79.3 62 71.0
Sp3g31060 Schrenkiella parvula HOM05D001630 ORTHO05D002505 1.5e-13 79.3 58 74.1
BraA09t36790Z Brassica rapa HOM05D001630 ORTHO05D002505 4.3e-13 77.8 58 74.1
BcaC04g22952 Brassica carinata HOM05D001630 ORTHO05D002505 7.4e-13 77.0 62 67.7
Aa31LG7G7180 Aethionema arabicum HOM05D001630 ORTHO05D002505 1.3e-12 76.3 89 53.9
A09p11500 Brassica napus HOM05D001630 ORTHO05D002505 4.8e-12 74.3 58 70.7
AT3G11880 Arabidopsis thaliana HOM05D001630 ORTHO05D002505 1.4e-11 72.8 63 65.1
Carub.0004s1079 Capsella rubella HOM05D001630 ORTHO05D002505 2.4e-11 72.0 84 52.4
AL5G13120 Arabidopsis lyrata HOM05D001630 ORTHO05D016581 3.1e-11 71.6 70 64.3
CARHR254720 Cardamine hirsuta HOM05D001630 ORTHO05D002505 4.0e-11 71.2 79 60.8
AL92U10020 Arabidopsis lyrata HOM05D001630 ORTHO05D002505 1.5e-10 69.3 62 66.1
AL5G10600 Arabidopsis lyrata HOM05D001630 ORTHO05D016581 2.6e-10 68.6 69 65.2
COL.COLO4_09035 Corchorus olitorius HOM05D001630 ORTHO05D002505 3.4e-10 68.2 81 49.4
EL10Ac6g14195 Beta vulgaris HOM05D001630 ORTHO05D002505 4.5e-10 67.8 67 55.2
BcaC07g39024 Brassica carinata HOM05D001630 ORTHO05D012176 5.8e-10 67.4 57 64.9
C08p19980 Brassica napus HOM05D001630 ORTHO05D012176 7.6e-10 67.0 57 63.2
BolC8t49634H Brassica oleracea HOM05D001630 ORTHO05D012176 7.6e-10 67.0 57 63.2
Atru.chr1.1897 Acer truncatum HOM05D001630 ORTHO05D002505 1.3e-09 66.2 77 50.6
A06p19100 Brassica napus HOM05D001630 ORTHO05D002505 1.3e-09 66.2 66 59.1
C06p46250 Brassica napus HOM05D001630 ORTHO05D002505 1.7e-09 65.9 55 67.3
Hma1.2p1_0330F.1_g127380 Hydrangea macrophylla HOM05D001630 ORTHO05D002505 1.7e-09 65.9 69 52.2
BcaB07g32186 Brassica carinata HOM05D001630 ORTHO05D002505 3.8e-09 64.7 76 52.6
Carub.0007s3371 Capsella rubella HOM05D001630 ORTHO05D002505 3.8e-09 64.7 70 57.1
MD13G1022000 Malus domestica HOM05D001630 ORTHO05D002505 3.8e-09 64.7 83 49.4
Ah.03g137340 Amaranthus hybridus HOM05D001630 ORTHO05D002505 5.0e-09 64.3 67 52.2
A09p68770 Brassica napus HOM05D001630 ORTHO05D002505 5.0e-09 64.3 56 62.5
BraA09t42214Z Brassica rapa HOM05D001630 ORTHO05D012176 5.0e-09 64.3 56 62.5
BcaB07g32184 Brassica carinata HOM05D001630 ORTHO05D012176 6.5e-09 63.9 62 58.1
Lj3A867T57 Lonicera japonica HOM05D001630 ORTHO05D002505 6.5e-09 63.9 68 51.5
BcaC08g46657 Brassica carinata HOM05D001630 ORTHO05D011112 8.4e-09 63.5 55 65.5
BolC6t39671H Brassica oleracea HOM05D001630 ORTHO05D002505 8.4e-09 63.5 55 65.5
ClCG07G005980 Citrullus lanatus HOM05D001630 ORTHO05D002505 8.4e-09 63.5 68 52.9
CsaV3_5G014690 Cucumis sativus L. HOM05D001630 ORTHO05D002505 8.4e-09 63.5 68 52.9
Dinv18614 Davidia involucrata HOM05D001630 ORTHO05D002505 8.4e-09 63.5 68 50.0
Dinv26230 Davidia involucrata HOM05D001630 ORTHO05D002505 8.4e-09 63.5 68 50.0
HanXRQChr17g0566831 Helianthus annuus HOM05D001630 ORTHO05D002505 1.1e-08 63.2 83 47.0
Hund24965 Selenicereus undatus HOM05D001630 ORTHO05D002505 1.4e-08 62.8 67 53.7
TAR622G0558 Trochodendron aralioides HOM05D001630 ORTHO05D002505 1.4e-08 62.8 68 51.5
BraA06t24993Z Brassica rapa HOM05D001630 ORTHO05D002505 1.9e-08 62.4 66 56.1
SGA_v2.0_scaffold50G18479 Striga asiatica HOM05D001630 ORTHO05D002505 1.9e-08 62.4 68 50.0
AL8G20510 Arabidopsis lyrata HOM05D001630 ORTHO05D002505 3.2e-08 61.6 64 62.5
A09p68750 Brassica napus HOM05D001630 ORTHO05D002505 4.2e-08 61.2 51 66.7
Carub.0007s3366 Capsella rubella HOM05D001630 ORTHO05D002505 4.2e-08 61.2 54 63.0
Lsat_1_v5_gn_4_13621 Lactuca sativa HOM05D001630 ORTHO05D002505 4.2e-08 61.2 83 41.0
Lsat_1_v5_gn_8_44220 Lactuca sativa HOM05D001630 ORTHO05D002505 4.2e-08 61.2 83 41.0
Thecc.02G287300 Theobroma cacao HOM05D001630 ORTHO05D002505 4.2e-08 61.2 68 51.5
Atru.chr11.655 Acer truncatum HOM05D001630 ORTHO05D002505 5.5e-08 60.8 68 50.0
Gohir.A04G141800 Gossypium hirsutum HOM05D001630 ORTHO05D002505 5.5e-08 60.8 78 48.7
Gorai.012G181300 Gossypium raimondii HOM05D001630 ORTHO05D002505 5.5e-08 60.8 78 48.7
A06p16290 Brassica napus HOM05D001630 ORTHO05D012176 7.1e-08 60.5 58 55.2
BolC5t30788H Brassica oleracea HOM05D001630 ORTHO05D002505 7.1e-08 60.5 56 62.5
BraA06t24731Z Brassica rapa HOM05D001630 ORTHO05D002505 7.1e-08 60.5 58 55.2
MELO3C026422.2 Cucumis melo HOM05D001630 ORTHO05D002505 7.1e-08 60.5 68 51.5
HanXRQChr09g0258881 Helianthus annuus HOM05D001630 ORTHO05D002505 7.1e-08 60.5 75 48.0
HanXRQChr16g0529811 Helianthus annuus HOM05D001630 ORTHO05D002505 7.1e-08 60.5 63 50.8
Prupe.1G329900 Prunus persica HOM05D001630 ORTHO05D002505 7.1e-08 60.5 69 49.3
Cpa.g.sc116.51 Carica papaya HOM05D001630 ORTHO05D002505 9.3e-08 60.1 82 46.3
COL.COLO4_13102 Corchorus olitorius HOM05D001630 ORTHO05D002505 9.3e-08 60.1 83 44.6
MSTRG.13605 Avicennia marina HOM05D001630 ORTHO05D002505 1.2e-07 59.7 68 51.5
AUR62014193 Chenopodium quinoa HOM05D001630 ORTHO05D002505 1.2e-07 59.7 67 47.8
AUR62039524 Chenopodium quinoa HOM05D001630 ORTHO05D002505 1.2e-07 59.7 67 47.8
Sabra10G0080800 Salix brachista HOM05D001630 ORTHO05D002505 1.2e-07 59.7 68 48.5
Sc04g0005310 Simmondsia chinensis HOM05D001630 ORTHO05D002505 1.2e-07 59.7 67 50.7
AL6G43120 Arabidopsis lyrata HOM05D001630 ORTHO05D011112 1.6e-07 59.3 51 66.7
BcaC07g42244 Brassica carinata HOM05D001630 ORTHO05D012176 1.6e-07 59.3 41 73.2
BcaC07g42254 Brassica carinata HOM05D001630 ORTHO05D012176 1.6e-07 59.3 41 73.2
C08p52770 Brassica napus HOM05D001630 ORTHO05D012176 1.6e-07 59.3 41 73.2
BolC8t52860H Brassica oleracea HOM05D001630 ORTHO05D012176 1.6e-07 59.3 41 73.2
Rhsim09G0094000 Rhododendron simsii HOM05D001630 ORTHO05D002505 1.6e-07 59.3 68 48.5
Ciclev10014686m.g Citrus clementina HOM05D001630 ORTHO05D002505 2.1e-07 58.9 68 48.5
Dinv28211 Davidia involucrata HOM05D001630 ORTHO05D002505 2.1e-07 58.9 77 45.5
LjContig00141g0001694 Lotus japonicus HOM05D001630 ORTHO05D002505 2.1e-07 58.9 66 53.0
Nn4g24249 Nelumbo nucifera HOM05D001630 ORTHO05D002505 2.1e-07 58.9 67 46.3
SGA_v2.0_scaffold234G43657 Striga asiatica HOM05D001630 ORTHO05D002505 2.1e-07 58.9 68 51.5
Ah.02g127830 Amaranthus hybridus HOM05D001630 ORTHO05D002505 2.7e-07 58.5 68 51.5
BcaC05g26112 Brassica carinata HOM05D001630 ORTHO05D012176 2.7e-07 58.5 56 60.7
C05p20900 Brassica napus HOM05D001630 ORTHO05D012176 2.7e-07 58.5 56 60.7
Cpa.g.sc1084.3 Carica papaya HOM05D001630 ORTHO05D002505 2.7e-07 58.5 75 42.7
DCAR_030239 Daucus carota HOM05D001630 ORTHO05D002505 2.7e-07 58.5 68 48.5
RcHm_v2.0_Chr4g0443601 Rosa chinensis HOM05D001630 ORTHO05D002505 2.7e-07 58.5 70 50.0
BcaB06g26241 Brassica carinata HOM05D001630 ORTHO05D002505 3.5e-07 58.2 57 61.4
CiPaw.03G071300 Carya illinoinensis HOM05D001630 ORTHO05D002505 3.5e-07 58.2 79 44.3
Duzib133G1256 Durio zibethinus HOM05D001630 ORTHO05D002505 3.5e-07 58.2 66 54.5
Migut.E00447 Erythranthe guttata HOM05D001630 ORTHO05D002505 3.5e-07 58.2 63 52.4
Potri.008G131800 Populus trichocarpa HOM05D001630 ORTHO05D002505 3.5e-07 58.2 68 50.0
TWI53G0025 Tripterygium wilfordii HOM05D001630 ORTHO05D002505 3.5e-07 58.2 67 50.7
A05p09590 Brassica napus HOM05D001630 ORTHO05D027296 4.6e-07 57.8 60 58.3
Carub.0004s1259 Capsella rubella HOM05D001630 ORTHO05D002505 4.6e-07 57.8 58 63.8
Gohir.D04G187100 Gossypium hirsutum HOM05D001630 ORTHO05D002505 4.6e-07 57.8 78 47.4
HanXRQChr12g0363531 Helianthus annuus HOM05D001630 ORTHO05D002505 4.6e-07 57.8 82 37.8
MD00G1185200 Malus domestica HOM05D001630 ORTHO05D002505 4.6e-07 57.8 75 48.0
MD09G1264000 Malus domestica HOM05D001630 ORTHO05D002505 4.6e-07 57.8 65 50.8
Potri.010G110500 Populus trichocarpa HOM05D001630 ORTHO05D002505 4.6e-07 57.8 68 45.6
QL03p033886 Quercus lobata HOM05D001630 ORTHO05D002505 4.6e-07 57.8 67 47.8
MD16G1023000 Malus domestica HOM05D001630 ORTHO05D002505 6.1e-07 57.4 77 49.4
Prupe.3G161600 Prunus persica HOM05D001630 ORTHO05D002505 6.1e-07 57.4 77 44.2
RcHm_v2.0_Chr3g0493091 Rosa chinensis HOM05D001630 ORTHO05D002505 6.1e-07 57.4 75 46.7
TWI77G0817 Tripterygium wilfordii HOM05D001630 ORTHO05D002505 6.1e-07 57.4 65 50.8
Duzib268G1042 Durio zibethinus HOM05D001630 ORTHO05D002505 7.9e-07 57.0 68 48.5
SalBow8G0986 Salvia bowleyana HOM05D001630 ORTHO05D002505 1.0e-06 56.6 61 52.5
Aqoxy3G00053 Aquilegia oxysepala HOM05D001630 ORTHO05D002505 1.3e-06 56.2 68 45.6
BcaC07g42361 Brassica carinata HOM05D001630 ORTHO05D012176 1.3e-06 56.2 41 70.7
Manes.17G080400 Manihot esculenta HOM05D001630 ORTHO05D002505 1.3e-06 56.2 76 43.4
Potri.004G091100 Populus trichocarpa HOM05D001630 ORTHO05D002505 1.3e-06 56.2 63 50.8
Sabra04G0061300 Salix brachista HOM05D001630 ORTHO05D002505 1.3e-06 56.2 63 50.8
BcaC07g42370 Brassica carinata HOM05D001630 ORTHO05D012176 1.8e-06 55.8 41 73.2
FvH4_4g34080 Fragaria vesca HOM05D001630 ORTHO05D002505 1.8e-06 55.8 70 50.0
FAN12G0350 Fragaria x ananassa HOM05D001630 ORTHO05D002505 1.8e-06 55.8 70 50.0
FAN22G0549 Fragaria x ananassa HOM05D001630 ORTHO05D002505 1.8e-06 55.8 70 50.0
Gohir.A01G150100 Gossypium hirsutum HOM05D001630 ORTHO05D002505 1.8e-06 55.8 64 50.0
Potri.017G124300 Populus trichocarpa HOM05D001630 ORTHO05D002505 1.8e-06 55.8 63 49.2
MSTRG.2151 Avicennia marina HOM05D001630 ORTHO05D002505 2.3e-06 55.5 65 50.8
Hma1.2p1_0346F.1_g131550 Hydrangea macrophylla HOM05D001630 ORTHO05D002505 2.3e-06 55.5 69 44.9
Sabra08G0100600 Salix brachista HOM05D001630 ORTHO05D002505 2.3e-06 55.5 68 47.1
SalBow2G2060 Salvia bowleyana HOM05D001630 ORTHO05D002505 2.3e-06 55.5 62 48.4
TWI74G1681 Tripterygium wilfordii HOM05D001630 ORTHO05D002505 2.3e-06 55.5 68 48.5
DCAR_026786 Daucus carota HOM05D006947 ORTHO05D008818 3.0e-06 55.1 68 42.6
FvH4_1g28730 Fragaria vesca HOM05D001630 ORTHO05D002505 3.0e-06 55.1 75 45.3
FAN17G2556 Fragaria x ananassa HOM05D001630 ORTHO05D002505 3.0e-06 55.1 70 48.6
FAN23G2186 Fragaria x ananassa HOM05D001630 ORTHO05D002505 3.0e-06 55.1 75 45.3
Manes.15G131000 Manihot esculenta HOM05D001630 ORTHO05D002505 3.0e-06 55.1 77 41.6
Sopen05g023000 Solanum pennellii HOM05D001630 ORTHO05D002505 3.0e-06 55.1 66 43.9
Thecc.04G116400 Theobroma cacao HOM05D001630 ORTHO05D002505 3.0e-06 55.1 63 52.4
Carub.0005s0085 Capsella rubella HOM05D001630 ORTHO05D016581 3.9e-06 54.7 56 57.1
Solyc05g026540.3 Solanum lycopersicum HOM05D001630 ORTHO05D002505 3.9e-06 54.7 66 42.4
VMungo0647G0260 Vigna mungo HOM05D001630 ORTHO05D002505 5.1e-06 54.3 65 50.8
Lj4A264T54 Lonicera japonica HOM05D001630 ORTHO05D002505 6.7e-06 53.9 77 41.6
Oeu014046.2 Olea europaea HOM05D001630 ORTHO05D002505 6.7e-06 53.9 63 52.4
Sed0001736 Sechium edule HOM05D001630 ORTHO05D002505 6.7e-06 53.9 62 53.2
arahy.Tifrunner.gnm1.ann1.6GC407 Arachis hypogaea HOM05D001630 ORTHO05D002505 8.7e-06 53.5 67 41.8
Carub.0007s3370 Capsella rubella HOM05D001630 ORTHO05D002505 8.7e-06 53.5 42 64.3
Gohir.D01G143400 Gossypium hirsutum HOM05D001630 ORTHO05D002505 8.7e-06 53.5 65 46.2
Gorai.002G176900 Gossypium raimondii HOM05D001630 ORTHO05D002505 8.7e-06 53.5 65 46.2
Phvul.008G235400 Phaseolus vulgaris HOM05D001630 ORTHO05D002505 8.7e-06 53.5 65 47.7
SGA_v2.0_scaffold50G18475 Striga asiatica HOM05D001630 ORTHO05D002505 8.7e-06 53.5 82 41.5


User provided reference genes

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