Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1760.3 857 100.0
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 0.0e+00 1739.2 857 98.9
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1719.5 858 98.1
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1702.6 860 97.0
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1624.8 861 92.1
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 0.0e+00 1575.5 860 91.7
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1569.3 863 88.5
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1564.7 894 86.0
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1560.4 862 87.9
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1536.5 896 84.4
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 0.0e+00 1463.7 880 81.5
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 0.0e+00 1365.5 858 77.2
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1260.4 783 76.9
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1260.0 783 76.2
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 0.0e+00 1255.0 786 75.8
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1238.0 782 74.8
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1229.9 783 74.6
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1218.8 817 72.6
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 0.0e+00 1217.6 787 73.6
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1212.6 812 72.5
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 0.0e+00 1205.7 781 74.1
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 0.0e+00 1202.6 791 73.2
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 0.0e+00 1193.3 860 66.6
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1189.9 857 65.9
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 0.0e+00 1181.4 857 66.0
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1181.0 857 66.0
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1176.8 857 65.6
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 0.0e+00 1176.8 855 67.0
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 0.0e+00 1171.8 855 65.7
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 0.0e+00 1168.7 857 66.4
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 0.0e+00 1164.4 855 64.8
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1162.1 860 64.3
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 0.0e+00 1161.4 859 65.4
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1160.2 822 69.8
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 0.0e+00 1160.2 854 65.6
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 0.0e+00 1158.3 861 64.5
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 0.0e+00 1157.5 856 65.9
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1156.4 854 63.8
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1156.0 854 63.8
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 0.0e+00 1153.7 856 64.7
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 0.0e+00 1151.0 860 65.2
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1151.0 857 64.4
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1150.2 738 74.4
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1150.2 859 64.5
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1149.8 856 63.9
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 0.0e+00 1148.7 860 65.1
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 0.0e+00 1144.0 857 64.3
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1142.5 869 63.3
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1135.9 859 63.9
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 0.0e+00 1135.9 860 63.7
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1132.9 855 63.7
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1127.5 876 62.6
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1126.7 866 63.3
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 0.0e+00 1122.1 859 62.9
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 0.0e+00 1120.1 891 62.1
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1119.8 820 66.1
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 0.0e+00 1119.4 808 67.9
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 0.0e+00 1118.6 975 57.7
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 0.0e+00 1118.2 861 61.8
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1117.4 856 62.6
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 0.0e+00 1117.1 855 64.1
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 0.0e+00 1114.0 887 61.0
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 0.0e+00 1113.2 859 62.5
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 0.0e+00 1113.2 857 62.5
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 0.0e+00 1110.9 861 61.8
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 0.0e+00 1109.0 863 62.3
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1109.0 858 62.4
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 0.0e+00 1107.4 859 62.5
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 0.0e+00 1107.0 862 62.3
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1104.4 794 67.3
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 0.0e+00 1102.8 858 62.2
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 0.0e+00 1102.0 831 64.1
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1101.3 860 61.5
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1100.9 856 63.0
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1100.9 857 61.8
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 0.0e+00 1097.8 818 65.3
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 0.0e+00 1097.8 860 61.6
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1097.4 857 61.8
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 0.0e+00 1094.7 854 62.5
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 0.0e+00 1088.9 861 61.7
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1088.9 880 61.4
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1087.4 861 61.0
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 0.0e+00 1085.5 857 62.1
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 0.0e+00 1085.1 861 60.7
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1080.5 860 60.6
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1077.0 857 60.1
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 0.0e+00 1076.6 855 61.2
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1076.6 860 60.3
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1076.2 861 60.6
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 4.1e-311 1071.2 858 61.1
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 1.5e-310 1069.3 856 60.5
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 2.0e-310 1068.9 865 60.5
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 2.6e-310 1068.5 856 60.4
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 4.5e-310 1067.8 857 60.1
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 4.9e-309 1064.3 856 59.7
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 1.7e-306 1055.8 801 62.4
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 1.8e-303 1045.8 872 59.7
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 1.1e-300 1036.6 857 59.3
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 2.4e-300 1035.4 800 61.4
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 2.7e-299 1031.9 863 59.7
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 2.7e-299 1031.9 857 58.1
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 1.1e-297 1026.5 861 59.6
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 9.6e-297 1023.5 864 57.3
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 1.8e-295 1019.2 732 66.4
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 4.0e-295 1018.1 757 62.4
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 3.0e-290 1001.9 775 59.9
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 1.9e-289 999.2 777 59.7
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 2.5e-289 998.8 845 58.6
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 2.4e-287 992.3 723 65.7
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 9.0e-287 990.3 777 63.8
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 4.5e-286 988.0 885 56.0
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 6.4e-285 984.2 771 62.9
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 1.4e-284 983.0 783 59.6
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 1.6e-283 979.5 853 56.4
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 4.3e-281 971.5 804 57.6
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 1.0e-277 960.3 865 55.5
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 8.7e-274 947.2 927 52.6
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 5.5e-268 927.9 802 59.2
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 9.4e-268 927.2 481 91.1
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 1.4e-252 876.7 865 52.3
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 2.2e-248 862.8 866 50.0
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 2.1e-243 846.3 838 50.4
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 1.7e-237 826.6 659 61.9
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 1.1e-236 823.9 788 55.1
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 1.5e-228 797.0 859 46.6
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 4.0e-218 762.3 796 46.7
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 8.3e-216 754.6 630 58.6
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 1.2e-209 734.2 607 60.6
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 2.1e-206 723.4 671 57.2
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 1.3e-197 694.1 669 50.4
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 9.6e-196 688.0 665 53.8
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 9.9e-193 677.9 434 71.4
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 8.4e-184 648.3 430 68.1
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 5.3e-178 629.0 580 57.4
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 7.4e-172 608.6 593 53.1
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 9.3e-167 591.7 427 64.6
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 1.2e-161 574.7 870 38.7
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 1.0e-160 571.6 473 58.1
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 4.6e-158 562.8 534 51.9
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 5.5e-127 459.5 321 65.7
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 4.0e-125 453.4 434 54.1
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 7.5e-116 422.5 270 73.0
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 1.5e-111 408.3 785 35.7
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 1.9e-111 407.9 410 52.2
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 2.6e-108 397.5 335 58.5
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 4.9e-107 393.3 908 33.3
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.9e-95 354.8 407 47.7
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 6.0e-89 333.2 443 43.3
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 5.2e-85 320.1 403 46.2
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 8.9e-85 319.3 243 60.9
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 5.4e-82 310.1 542 34.1
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 3.4e-68 264.2 202 61.4
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 1.0e-51 209.5 207 55.1
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 7.1e-50 203.4 137 67.9
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.9e-47 195.3 168 57.1
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 4.3e-47 194.1 100 82.0
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 8.7e-40 169.9 99 78.8
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 1.8e-37 162.2 194 45.4
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 1.7e-27 129.0 81 71.6
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 8.5e-27 126.7 155 42.6
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 5.5e-26 124.0 87 70.1
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 2.3e-24 118.6 96 66.7
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 1.1e-23 116.3 95 66.3
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 1.4e-21 109.4 70 72.9
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 1.7e-19 102.4 123 50.4
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 5.0e-19 100.9 83 56.6
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 1.1e-18 99.8 95 55.8
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 1.1e-15 89.7 82 58.5
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 5.7e-15 87.4 60 66.7
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 6.3e-14 84.0 97 48.5
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 1.2e-12 79.7 39 87.2
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 1.6e-12 79.3 45 71.1
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 2.7e-12 78.6 88 43.2
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 5.0e-11 74.3 44 75.0
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 1.2e-07 63.2 57 49.1
TPR.G36369 Trifolium pratense HOM05D004097 ORTHO05D001670 3.7e-06 58.2 67 44.8


User provided reference genes

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