Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 1.0e-188 663.3 346 100.0
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 1.0e-188 663.3 346 100.0
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 1.7e-183 646.0 346 97.1
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 1.7e-183 646.0 346 97.1
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 1.7e-183 646.0 346 97.1
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 9.0e-161 570.5 350 86.9
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 4.7e-61 239.2 508 37.0
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 3.1e-60 236.5 414 40.8
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 3.5e-56 223.0 460 37.6
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 3.9e-55 219.5 478 35.8
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 1.1e-54 218.0 506 36.4
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 2.5e-54 216.9 484 34.9
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 2.5e-54 216.9 484 34.9
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 2.5e-54 216.9 484 34.9
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 4.3e-54 216.1 482 34.9
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 5.6e-54 215.7 483 34.6
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 1.1e-52 211.5 480 35.8
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 2.2e-50 203.8 478 35.4
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 4.2e-49 199.5 497 33.6
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 2.1e-45 187.2 493 31.4
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 7.1e-41 172.2 478 32.6
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 2.1e-40 170.6 461 33.2
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 1.6e-37 161.0 505 29.1
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 3.3e-22 110.2 513 24.6
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 2.2e-21 107.5 263 30.4
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 1.1e-20 105.1 260 27.7
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 1.1e-20 105.1 478 24.1
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 6.9e-20 102.4 468 24.4
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 9.0e-20 102.1 486 24.1
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 1.2e-19 101.7 264 28.4
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 1.2e-19 101.7 494 23.9
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 1.5e-19 101.3 261 28.0
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 1.5e-19 101.3 475 25.3
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 2.0e-19 100.9 485 24.1
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 2.0e-19 100.9 485 24.1
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 2.6e-19 100.5 500 24.6
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 2.6e-19 100.5 498 24.3
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 2.6e-19 100.5 493 23.9
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 3.4e-19 100.1 264 28.8
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 4.5e-19 99.8 491 25.1
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 4.5e-19 99.8 492 24.0
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 7.7e-19 99.0 448 25.0
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 1.0e-18 98.6 258 30.2
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 3.8e-18 96.7 499 24.4
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 5.0e-18 96.3 512 23.0
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 8.5e-18 95.5 259 26.3
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 1.4e-17 94.7 451 23.7
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.9e-17 94.4 162 33.3
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 1.9e-17 94.4 254 28.7
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 1.9e-17 94.4 266 27.1
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 2.5e-17 94.0 298 26.8
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 2.5e-17 94.0 263 28.1
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 4.2e-17 93.2 155 33.5
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 4.2e-17 93.2 469 24.1
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 5.5e-17 92.8 244 26.6
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 7.2e-17 92.4 262 26.7
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 7.2e-17 92.4 288 26.0
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 7.2e-17 92.4 254 28.3
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 9.4e-17 92.0 497 23.9
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 2.7e-16 90.5 509 22.4
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 2.7e-16 90.5 262 26.0
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.7e-16 90.5 262 26.0
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 2.7e-16 90.5 460 22.2
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 2.7e-16 90.5 262 26.3
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 3.6e-16 90.1 261 28.0
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 3.6e-16 90.1 270 25.9
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 4.6e-16 89.7 313 27.2
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 4.6e-16 89.7 504 23.8
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 7.9e-16 89.0 160 31.2
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 7.9e-16 89.0 165 30.9
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 1.0e-15 88.6 253 26.1
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 1.0e-15 88.6 256 25.8
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 1.4e-15 88.2 501 22.4
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 1.8e-15 87.8 264 27.3
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 1.8e-15 87.8 264 26.1
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 2.3e-15 87.4 146 30.8
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 3.9e-15 86.7 265 23.8
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 3.9e-15 86.7 264 26.1
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 6.7e-15 85.9 310 25.2
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 8.8e-15 85.5 300 25.7
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 8.8e-15 85.5 254 24.4
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 8.8e-15 85.5 250 26.8
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 8.8e-15 85.5 316 24.4
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 1.1e-14 85.1 251 27.9
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 1.5e-14 84.7 176 27.3
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 2.0e-14 84.3 517 22.1
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 2.0e-14 84.3 185 28.1
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 2.5e-14 84.0 147 30.6
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 2.5e-14 84.0 265 26.4
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 3.3e-14 83.6 253 24.9
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 3.3e-14 83.6 152 29.6
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 4.3e-14 83.2 264 25.8
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 7.4e-14 82.4 265 25.3
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 9.7e-14 82.0 249 23.3
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 9.7e-14 82.0 270 24.1
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 1.7e-13 81.3 160 30.6
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 2.8e-13 80.5 473 23.0
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 3.7e-13 80.1 263 26.2
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 4.8e-13 79.7 251 25.1
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 6.3e-13 79.3 248 24.2
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 8.2e-13 79.0 233 26.6
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 1.1e-12 78.6 164 31.7
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 1.8e-12 77.8 259 22.8
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 1.8e-12 77.8 147 29.3
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 1.8e-12 77.8 147 30.6
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 2.4e-12 77.4 250 24.4
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 4.1e-12 76.6 248 23.8
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 6.9e-12 75.9 270 25.6
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 1.2e-11 75.1 143 29.4
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 1.2e-11 75.1 244 24.6
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 1.5e-11 74.7 442 21.9
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 4.5e-11 73.2 251 25.5
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 2.9e-10 70.5 515 22.7
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 3.8e-10 70.1 252 24.2
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 2.5e-09 67.4 115 40.0
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 9.4e-09 65.5 116 38.8
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 1.2e-08 65.1 479 20.3
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.8e-07 61.2 98 32.7
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.8e-07 61.2 98 32.7
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 3.0e-07 60.5 88 45.5
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 3.9e-07 60.1 103 44.7
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 6.7e-07 59.3 114 40.4


User provided reference genes

Program Settings