Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 6.9e-176 620.5 315 100.0
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 1.6e-169 599.4 315 96.5
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 2.1e-169 599.0 315 95.9
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 1.2e-167 593.2 315 95.6
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 7.9e-156 553.9 316 89.6
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 2.3e-131 472.6 327 75.5
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 2.2e-129 466.1 321 77.3
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 7.2e-125 451.1 271 82.7
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 1.5e-117 426.8 288 75.3
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 1.5e-117 426.8 288 76.7
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 3.6e-116 422.2 291 74.6
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 5.7e-114 414.8 307 71.0
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 4.7e-108 395.2 285 74.0
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 3.6e-100 369.0 292 67.8
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 1.2e-95 354.0 307 62.9
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 5.2e-91 338.6 284 61.3
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 1.4e-80 303.9 280 55.4
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 2.4e-80 303.1 284 54.6
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 2.3e-78 296.6 248 56.0
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 1.9e-77 293.5 288 54.5
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 1.9e-77 293.5 285 51.9
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 3.3e-77 292.7 296 51.0
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 3.3e-77 292.7 250 56.8
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 3.3e-77 292.7 289 51.2
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 3.6e-76 289.3 285 50.9
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 4.7e-76 288.9 292 53.1
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 8.1e-76 288.1 273 50.9
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 1.1e-75 287.7 251 54.2
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 2.4e-75 286.6 268 51.9
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 5.2e-75 285.4 278 50.4
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 5.2e-75 285.4 277 51.3
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 2.6e-74 283.1 289 50.2
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 4.4e-74 282.3 288 49.7
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 4.4e-74 282.3 276 51.1
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 4.4e-74 282.3 288 50.7
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 9.9e-74 281.2 295 48.5
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 9.9e-74 281.2 298 49.3
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 1.3e-73 280.8 285 51.2
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 3.8e-73 279.3 270 51.5
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 4.9e-73 278.9 290 48.6
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 6.4e-73 278.5 281 49.5
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.1e-72 277.7 273 49.1
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 1.1e-72 277.7 277 51.3
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.9e-72 276.9 273 49.1
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 2.4e-72 276.6 277 48.4
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 4.2e-72 275.8 277 48.0
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 5.4e-72 275.4 293 48.8
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 9.3e-72 274.6 279 49.8
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 2.1e-71 273.5 290 48.6
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 4.6e-71 272.3 290 48.6
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 7.8e-71 271.6 291 48.5
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 1.7e-70 270.4 248 52.0
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 2.3e-70 270.0 291 46.4
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 3.9e-70 269.2 278 51.4
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 3.9e-70 269.2 268 50.0
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 1.5e-69 267.3 250 51.2
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 3.3e-69 266.2 289 44.6
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 9.6e-69 264.6 278 49.6
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 1.3e-68 264.2 277 48.0
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 1.6e-68 263.8 269 49.4
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 2.1e-68 263.5 261 49.0
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 2.8e-68 263.1 257 49.8
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 4.8e-68 262.3 292 48.3
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 8.1e-68 261.5 273 48.4
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 4.0e-67 259.2 266 49.2
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 9.0e-67 258.1 255 50.6
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 2.6e-66 256.5 248 48.0
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 4.5e-66 255.8 279 45.5
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 7.6e-66 255.0 258 48.8
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 7.6e-66 255.0 248 48.0
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 1.7e-65 253.8 290 48.3
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 2.2e-65 253.4 264 47.7
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.9e-65 253.1 242 48.8
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 4.9e-65 252.3 248 50.4
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 1.9e-64 250.4 248 50.0
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 2.4e-64 250.0 294 43.5
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 2.4e-64 250.0 274 48.2
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 3.2e-64 249.6 242 48.3
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 9.3e-64 248.1 291 43.0
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 1.2e-63 247.7 290 44.8
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 2.1e-63 246.9 288 43.8
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 4.6e-63 245.7 257 51.0
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 6.0e-63 245.4 253 46.6
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 1.8e-62 243.8 288 46.2
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 2.3e-62 243.4 302 43.0
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 3.9e-62 242.7 274 47.1
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 3.9e-62 242.7 317 42.3
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 5.1e-62 242.3 294 44.2
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 3.3e-61 239.6 252 50.8
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 4.3e-61 239.2 276 42.0
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 7.4e-61 238.4 312 39.4
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 7.4e-61 238.4 312 39.4
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.6e-60 237.3 252 49.2
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.1e-59 234.6 283 46.3
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 1.1e-59 234.6 286 42.0
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 2.4e-59 233.4 251 48.2
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 3.1e-59 233.0 286 42.0
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 4.0e-59 232.6 252 48.4
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 4.0e-59 232.6 252 48.4
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 4.0e-59 232.6 291 45.4
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 4.0e-59 232.6 414 34.3
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 2.0e-58 230.3 190 56.3
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 2.6e-58 229.9 289 44.3
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 1.7e-57 227.3 208 53.4
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 1.6e-55 220.7 286 42.0
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 1.0e-54 218.0 342 38.3
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 3.0e-54 216.5 292 41.4
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 5.1e-54 215.7 285 38.9
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 8.7e-54 214.9 342 35.7
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 1.0e-46 191.4 214 45.8
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 3.0e-46 189.9 174 51.1
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 1.6e-44 184.1 245 39.6
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 2.8e-44 183.3 174 50.6
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 2.8e-44 183.3 239 43.5
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 2.8e-44 183.3 301 36.5
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 4.8e-44 182.6 201 47.8
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 7.6e-42 175.3 206 40.8
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 2.3e-38 163.7 166 55.4
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 2.3e-38 163.7 140 55.0
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 9.7e-37 158.3 148 57.4
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 2.9e-33 146.7 326 28.5
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 8.5e-33 145.2 180 45.0
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 2.5e-32 143.7 102 73.5
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 7.2e-32 142.1 275 35.3
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 9.4e-32 141.7 179 41.3
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 3.6e-31 139.8 148 53.4
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 3.6e-31 139.8 247 32.4
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 7.9e-31 138.7 148 52.7
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 1.8e-30 137.5 283 32.5
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 5.1e-30 136.0 108 58.3
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 1.1e-29 134.8 124 61.3
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.0e-29 134.0 122 54.9
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 2.6e-29 133.7 174 41.4
BcaC02g09173 Brassica carinata HOM05D004374 ORTHO05D005430 2.2e-28 130.6 108 70.4
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.4e-27 127.9 183 37.2
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 2.4e-27 127.1 289 32.2
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 1.3e-25 121.3 137 40.1
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 1.3e-25 121.3 245 30.2
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 5.0e-25 119.4 419 24.3
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 8.5e-25 118.6 126 45.2
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 1.4e-24 117.9 161 38.5
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.9e-24 117.5 85 68.2
C04p39300 Brassica napus HOM05D004374 ORTHO05D005430 1.6e-23 114.4 96 70.8
BolC4t25497H Brassica oleracea HOM05D004374 ORTHO05D005430 1.6e-23 114.4 96 70.8
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 3.6e-23 113.2 204 29.9
A04p15700 Brassica napus HOM05D004374 ORTHO05D040369 3.9e-22 109.8 134 54.5
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 6.7e-22 109.0 255 29.4
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 3.1e-19 100.1 63 76.2
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 5.9e-18 95.9 169 35.5
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 2.9e-17 93.6 64 70.3
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.1e-16 91.7 241 28.6
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 1.5e-16 91.3 193 32.1
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 4.7e-15 86.3 263 28.9
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 1.0e-14 85.1 61 62.3
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 3.3e-13 80.1 207 27.1
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 2.8e-12 77.0 60 66.7
BraA09t40093Z Brassica rapa HOM05D004374 ORTHO05D005430 1.6e-10 71.2 57 59.6
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 7.7e-10 68.9 111 38.7
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 2.1e-07 60.8 120 33.3
MD15G1345500 Malus domestica HOM05D004374 ORTHO05D005430 2.1e-07 60.8 65 49.2


User provided reference genes

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