Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p18210 Brassica napus HOM05D002338 ORTHO05D006706 1.4e-37 159.1 80 100.0
C04p56750 Brassica napus HOM05D002338 ORTHO05D006706 1.6e-20 102.4 70 77.1
BolC4t27207H Brassica oleracea HOM05D002338 ORTHO05D006706 1.6e-20 102.4 70 77.1
Thhalv10017003m.g Eutrema salsugineum HOM05D002338 ORTHO05D006706 1.6e-20 102.4 70 77.1
Sp4g10240 Schrenkiella parvula HOM05D002338 ORTHO05D006706 6.1e-20 100.5 70 75.7
A04p20960 Brassica napus HOM05D002338 ORTHO05D006706 1.0e-19 99.8 70 75.7
BraA04t17665Z Brassica rapa HOM05D002338 ORTHO05D006706 1.0e-19 99.8 70 75.7
Carub.0004s0807 Capsella rubella HOM05D002338 ORTHO05D006706 1.8e-19 99.0 70 75.7
THA.LOC104826428 Tarenaya hassleriana HOM05D002338 ORTHO05D006706 8.8e-19 96.7 70 72.9
AL4G21410 Arabidopsis lyrata HOM05D002338 ORTHO05D006706 1.1e-18 96.3 70 72.9
BcaC02g10875 Brassica carinata HOM05D002338 ORTHO05D006706 1.5e-18 95.9 71 71.8
AT2G27450 Arabidopsis thaliana HOM05D002338 ORTHO05D006706 2.6e-18 95.1 70 71.4
Aa31LG5G8780 Aethionema arabicum HOM05D002338 ORTHO05D006706 7.4e-18 93.6 70 68.6
THA.LOC104800525 Tarenaya hassleriana HOM05D002338 ORTHO05D006706 7.4e-18 93.6 70 71.4
CARHR120040 Cardamine hirsuta HOM05D002338 ORTHO05D006706 9.7e-18 93.2 70 70.0
Ciclev10028933m.g Citrus clementina HOM05D002338 ORTHO05D006706 1.3e-17 92.8 70 70.0
arahy.Tifrunner.gnm1.ann1.EN3ZRJ Arachis hypogaea HOM05D002338 ORTHO05D006706 1.7e-17 92.4 71 70.4
Hund18762 Selenicereus undatus HOM05D002338 ORTHO05D006706 1.7e-17 92.4 70 70.0
Ah.08g215660 Amaranthus hybridus HOM05D002338 ORTHO05D006706 2.2e-17 92.0 70 70.0
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 2.2e-17 92.0 70 71.4
AUR62009748 Chenopodium quinoa HOM05D002338 ORTHO05D006706 2.8e-17 91.7 70 70.0
AUR62036197 Chenopodium quinoa HOM05D002338 ORTHO05D006706 3.7e-17 91.3 70 70.0
ECA248G0812 Erigeron canadensis HOM05D002338 ORTHO05D006706 3.7e-17 91.3 70 70.0
Gohir.A09G096100 Gossypium hirsutum HOM05D002338 ORTHO05D006706 3.7e-17 91.3 70 68.6
Gohir.D09G095800 Gossypium hirsutum HOM05D002338 ORTHO05D006706 3.7e-17 91.3 70 68.6
Gorai.006G112500 Gossypium raimondii HOM05D002338 ORTHO05D006706 3.7e-17 91.3 70 68.6
Actinidia37079 Actinidia chinensis HOM05D002338 ORTHO05D006706 4.8e-17 90.9 70 67.1
EL10Ac7g15831 Beta vulgaris HOM05D002338 ORTHO05D006706 4.8e-17 90.9 70 68.6
CSS0045463 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006706 4.8e-17 90.9 70 68.6
Sabra04G0136100 Salix brachista HOM05D002338 ORTHO05D006706 4.8e-17 90.9 70 67.1
Glyma.08G074700 Glycine max HOM05D000446 ORTHO05D006706 6.3e-17 90.5 70 65.7
Potri.004G201400 Populus trichocarpa HOM05D002338 ORTHO05D006706 6.3e-17 90.5 70 68.6
arahy.Tifrunner.gnm1.ann1.R0HYNC Arachis hypogaea HOM05D002338 ORTHO05D006706 8.2e-17 90.1 70 68.6
Phvul.005G123100 Phaseolus vulgaris HOM05D002338 ORTHO05D006706 8.2e-17 90.1 70 67.1
SGA_v2.0_scaffold295G47518 Striga asiatica HOM05D002338 ORTHO05D006706 8.2e-17 90.1 70 65.7
arahy.Tifrunner.gnm1.ann1.65JLCH Arachis hypogaea HOM05D002338 ORTHO05D006706 1.1e-16 89.7 66 72.7
Lalb_Chr24g0393531 Lupinus albus HOM05D002338 ORTHO05D006706 1.1e-16 89.7 70 65.7
Glyma.12G185700 Glycine max HOM05D002338 ORTHO05D006706 1.4e-16 89.4 70 65.7
Oeu002370.1 Olea europaea HOM05D002338 ORTHO05D006706 1.4e-16 89.4 70 67.1
QL01p012128 Quercus lobata HOM05D002338 ORTHO05D006706 1.4e-16 89.4 70 64.3
Manes.04G002800 Manihot esculenta HOM05D002338 ORTHO05D006706 1.8e-16 89.0 70 65.7
CANSAT54G2275 Cannabis sativa HOM05D002338 ORTHO05D006706 2.4e-16 88.6 70 67.1
SalBow3G4661 Salvia bowleyana HOM05D002338 ORTHO05D006706 2.4e-16 88.6 70 65.7
GSVIVG01036111001 Vitis vinifera HOM05D002338 ORTHO05D006706 2.4e-16 88.6 70 65.7
Dinv22835 Davidia involucrata HOM05D002338 ORTHO05D006706 3.1e-16 88.2 70 65.7
Glyma.13G315800 Glycine max HOM05D002338 ORTHO05D006706 3.1e-16 88.2 70 65.7
Prupe.6G132000 Prunus persica HOM05D002338 ORTHO05D006706 3.1e-16 88.2 70 67.1
VMungo1080G1495 Vigna mungo HOM05D002338 ORTHO05D006706 3.1e-16 88.2 70 65.7
ATR0820G136 Amborella trichopoda HOM05D002338 ORTHO05D006706 4.1e-16 87.8 70 65.7
MD03G1147500 Malus domestica HOM05D002338 ORTHO05D006706 4.1e-16 87.8 70 65.7
MD11G1166200 Malus domestica HOM05D002338 ORTHO05D006706 4.1e-16 87.8 70 65.7
Sc21g0007050 Simmondsia chinensis HOM05D002338 ORTHO05D006706 5.3e-16 87.4 70 67.1
C04p24150 Brassica napus HOM05D002338 ORTHO05D006706 7.0e-16 87.0 70 70.0
BolC4t23912H Brassica oleracea HOM05D002338 ORTHO05D006706 7.0e-16 87.0 70 70.0
Cpa.g.sc195.1 Carica papaya HOM05D002338 ORTHO05D006706 7.0e-16 87.0 70 62.9
Duzib150G1080 Durio zibethinus HOM05D002338 ORTHO05D006706 7.0e-16 87.0 70 64.3
vmacro14352 Vaccinium macrocarpon HOM05D002338 ORTHO05D006706 7.0e-16 87.0 70 64.3
CiPaw.14G099400 Carya illinoinensis HOM05D002338 ORTHO05D006706 9.1e-16 86.7 70 65.7
Medtr2g086600 Medicago truncatula HOM05D002338 ORTHO05D006706 9.1e-16 86.7 70 64.3
Ca_01654_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006706 1.2e-15 86.3 70 64.3
Atru.chr3.3215 Acer truncatum HOM05D002338 ORTHO05D006706 1.6e-15 85.9 70 64.3
Cfa010006 Carpinus fangiana HOM05D002338 ORTHO05D006706 1.6e-15 85.9 70 65.7
CiPaw.13G135000 Carya illinoinensis HOM05D002338 ORTHO05D006706 1.6e-15 85.9 70 64.3
Haze_23365 Corylus avellana HOM05D002338 ORTHO05D006706 1.6e-15 85.9 70 64.3
HanXRQChr01g0024511 Helianthus annuus HOM05D002338 ORTHO05D006706 1.6e-15 85.9 70 67.1
Lj3g0018005 Lotus japonicus HOM05D002338 ORTHO05D006706 1.6e-15 85.9 70 64.3
Nitab4.5_0000755g0010 Nicotiana tabacum HOM05D002338 ORTHO05D006706 1.6e-15 85.9 70 65.7
Peaxi162Scf00040g00113 Petunia axillaris HOM05D002338 ORTHO05D006706 1.6e-15 85.9 70 65.7
CAN.G1524.8 Capsicum annuum HOM05D002338 ORTHO05D006706 2.0e-15 85.5 70 65.7
Cc01_g08990 Coffea canephora HOM05D002338 ORTHO05D006706 2.0e-15 85.5 70 64.3
Nn2g14191 Nelumbo nucifera HOM05D002338 ORTHO05D006706 2.0e-15 85.5 70 61.4
Solyc11g068540.2 Solanum lycopersicum HOM05D002338 ORTHO05D006706 2.0e-15 85.5 70 65.7
Sopen11g027260 Solanum pennellii HOM05D002338 ORTHO05D006706 2.0e-15 85.5 70 65.7
PGSC0003DMG400026336 Solanum tuberosum HOM05D002338 ORTHO05D006706 2.0e-15 85.5 70 65.7
Thecc.09G281400 Theobroma cacao HOM05D002338 ORTHO05D006706 2.0e-15 85.5 70 65.7
unitig_0.g555 Utricularia gibba HOM05D002338 ORTHO05D006706 2.0e-15 85.5 70 64.3
Migut.N02484 Erythranthe guttata HOM05D002338 ORTHO05D006706 2.6e-15 85.1 70 60.0
RcHm_v2.0_Chr5g0045651 Rosa chinensis HOM05D002338 ORTHO05D006706 2.6e-15 85.1 70 62.9
RcHm_v2.0_Chr5g0046351 Rosa chinensis HOM05D002338 ORTHO05D006706 2.6e-15 85.1 70 62.9
TAR633G2567 Trochodendron aralioides HOM05D002338 ORTHO05D006706 2.6e-15 85.1 70 64.3
MELO3C027387.2 Cucumis melo HOM05D002338 ORTHO05D006706 3.5e-15 84.7 70 64.3
DCAR_010340 Daucus carota HOM05D002338 ORTHO05D006706 3.5e-15 84.7 70 64.3
Lj2A965T21 Lonicera japonica HOM05D002338 ORTHO05D006706 3.5e-15 84.7 70 62.9
Nitab4.5_0006738g0010 Nicotiana tabacum HOM05D002338 ORTHO05D006706 3.5e-15 84.7 70 65.7
Psat5g258120 Pisum sativum HOM05D002338 ORTHO05D006706 3.5e-15 84.7 70 62.9
TPR.G4472 Trifolium pratense HOM05D002338 ORTHO05D006706 3.5e-15 84.7 70 62.9
MSTRG.17703 Avicennia marina HOM05D002338 ORTHO05D006706 4.5e-15 84.3 70 60.0
ClCG01G012180 Citrullus lanatus HOM05D002338 ORTHO05D006706 4.5e-15 84.3 70 64.3
FAN21G3331 Fragaria x ananassa HOM05D002338 ORTHO05D006706 4.5e-15 84.3 70 62.9
Oeu035434.1 Olea europaea HOM05D002338 ORTHO05D006706 4.5e-15 84.3 70 65.7
Psat1g178360 Pisum sativum HOM05D002338 ORTHO05D006706 4.5e-15 84.3 70 62.9
SMO331G0008 Selaginella moellendorffii HOM05D002338 ORTHO05D006706 4.5e-15 84.3 70 62.9
Lsat_1_v5_gn_1_59241 Lactuca sativa HOM05D002338 ORTHO05D006706 5.9e-15 84.0 70 61.4
PGR119G2253 Punica granatum HOM05D002338 ORTHO05D006706 5.9e-15 84.0 70 62.9
Sed0026919 Sechium edule HOM05D002338 ORTHO05D006706 5.9e-15 84.0 70 62.9
CsaV3_1G015920 Cucumis sativus L. HOM05D002338 ORTHO05D006706 7.7e-15 83.6 70 64.3
Rhsim01G0204800 Rhododendron simsii HOM05D002338 ORTHO05D006706 7.7e-15 83.6 70 61.4
BraA07t29537Z Brassica rapa HOM05D002338 ORTHO05D006706 1.7e-14 82.4 63 73.0
Hma1.2p1_0587F.1_g184230 Hydrangea macrophylla HOM05D002338 ORTHO05D006706 1.7e-14 82.4 70 61.4
TWI79G1300 Tripterygium wilfordii HOM05D002338 ORTHO05D006706 1.7e-14 82.4 70 61.4
FvH4_3g25110 Fragaria vesca HOM05D002338 ORTHO05D006706 2.2e-14 82.0 70 61.4
FAN11G3385 Fragaria x ananassa HOM05D002338 ORTHO05D006706 2.2e-14 82.0 70 61.4
Eucgr.J00500 Eucalyptus grandis HOM05D002338 ORTHO05D006706 2.9e-14 81.6 70 61.4
FAN25G3385 Fragaria x ananassa HOM05D002338 ORTHO05D006706 2.9e-14 81.6 70 61.4
Pp3c18_8260 Physcomitrium patens HOM05D002338 ORTHO05D006706 3.8e-14 81.3 70 61.4
MSTRG.12373 Avicennia marina HOM05D002338 ORTHO05D006706 8.5e-14 80.1 70 58.6
CSS0028747 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006706 1.5e-13 79.3 70 61.4
SEGI_19864 Sequoiadendron giganteum HOM05D002338 ORTHO05D006706 1.5e-13 79.3 70 58.6
PSO339G0254 Papaver somniferum HOM05D002338 ORTHO05D006706 2.5e-13 78.6 70 60.0
Mapoly0103s0045 Marchantia polymorpha HOM05D002338 ORTHO05D006706 3.2e-13 78.2 70 54.3
Os02g0533900 Oryza sativa ssp. japonica HOM05D002338 ORTHO05D006706 5.5e-13 77.4 70 58.6
Aqoxy2G01110 Aquilegia oxysepala HOM05D002338 ORTHO05D006706 7.2e-13 77.0 70 57.1
PSO801G0423 Papaver somniferum HOM05D002338 ORTHO05D006706 9.4e-13 76.6 70 58.6
CDE08G1107 Ceratophyllum demersum HOM05D002338 ORTHO05D006706 1.2e-12 76.3 70 58.6
SHI12384 Sapria himalayana HOM05D002338 ORTHO05D006706 1.6e-12 75.9 71 59.2
AagrBONN_evm.TU.Sc2ySwM_362.1450 Anthoceros agrestis HOM05D002338 ORTHO05D006706 3.6e-12 74.7 70 54.3
arahy.Tifrunner.gnm1.ann1.AW3P0S Arachis hypogaea HOM05D002338 ORTHO05D006706 1.8e-11 72.4 70 61.4
CBR_g2849 Chara braunii HOM05D002338 ORTHO05D000013 2.3e-11 72.0 70 54.3
CsaV3_1G015010 Cucumis sativus L. HOM05D002338 ORTHO05D006706 2.0e-10 68.9 60 63.3
arahy.Tifrunner.gnm1.ann1.MKCD0D Arachis hypogaea HOM05D002338 ORTHO05D006706 5.3e-08 60.8 65 56.9
TWI75G0919 Tripterygium wilfordii HOM05D002338 ORTHO05D006706 5.3e-08 60.8 70 48.6
Potri.009G162600 Populus trichocarpa HOM05D002338 ORTHO05D006706 2.0e-07 58.9 70 50.0
Manes.11G162650 Manihot esculenta HOM05D002338 ORTHO05D006706 6.5e-06 53.9 67 46.3


User provided reference genes

Program Settings