Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p13640 Brassica napus HOM05D003753 ORTHO05D020007 3.9e-145 518.1 257 100.0
BolC7t43092H Brassica oleracea HOM05D003753 ORTHO05D020007 1.3e-52 210.7 217 56.7
BcaC06g34676 Brassica carinata HOM05D003753 ORTHO05D020007 1.8e-52 210.3 127 84.3
BcaB01g02572 Brassica carinata HOM05D003753 ORTHO05D020007 8.5e-23 111.7 65 80.0
MD02G1077800 Malus domestica HOM05D003753 ORTHO05D005081 9.1e-17 91.7 160 37.5
Lsat_1_v5_gn_2_117981 Lactuca sativa HOM05D003753 ORTHO05D005081 1.0e-15 88.2 182 36.3
CSS0046684 Camellia sinensis var. sinensis HOM05D003753 ORTHO05D005081 5.0e-15 85.9 165 37.6
ECA236G2053 Erigeron canadensis HOM05D003753 ORTHO05D005081 6.5e-15 85.5 164 37.2
AUR62027495 Chenopodium quinoa HOM05D003753 ORTHO05D005081 1.1e-14 84.7 162 37.0
Hma1.2p1_0798F.1_g219790 Hydrangea macrophylla HOM05D003753 ORTHO05D005081 2.5e-14 83.6 157 36.3
Solyc05g025630.3 Solanum lycopersicum HOM05D003753 ORTHO05D005081 2.5e-14 83.6 157 38.2
BcaB08g34872 Brassica carinata HOM05D003753 ORTHO05D005081 3.2e-14 83.2 170 38.8
CSS0005601 Camellia sinensis var. sinensis HOM05D003753 ORTHO05D005081 3.2e-14 83.2 180 34.4
CARHR109970 Cardamine hirsuta HOM05D003753 ORTHO05D005081 3.2e-14 83.2 170 34.1
AUR62033985 Chenopodium quinoa HOM05D003753 ORTHO05D005081 4.2e-14 82.8 162 36.4
Lj4g0004391 Lotus japonicus HOM05D003753 ORTHO05D005081 4.2e-14 82.8 167 35.3
BcaC06g36597 Brassica carinata HOM05D003753 ORTHO05D005081 1.2e-13 81.3 70 60.0
C07p02380 Brassica napus HOM05D003753 ORTHO05D005081 1.2e-13 81.3 70 60.0
BolC7t40644H Brassica oleracea HOM05D003753 ORTHO05D005081 1.2e-13 81.3 70 60.0
FAN28G1000 Fragaria x ananassa HOM05D003753 ORTHO05D005081 2.1e-13 80.5 180 35.0
BcaC07g41247 Brassica carinata HOM05D003753 ORTHO05D005081 2.7e-13 80.1 170 37.6
A09p59260 Brassica napus HOM05D003753 ORTHO05D005081 2.7e-13 80.1 170 37.6
C08p42530 Brassica napus HOM05D003753 ORTHO05D005081 2.7e-13 80.1 170 37.6
BolC8t51814H Brassica oleracea HOM05D003753 ORTHO05D005081 2.7e-13 80.1 170 37.6
BraA09t41308Z Brassica rapa HOM05D003753 ORTHO05D005081 2.7e-13 80.1 170 37.6
Carub.0003s3383 Capsella rubella HOM05D003753 ORTHO05D005081 3.6e-13 79.7 70 60.0
Prupe.7G211000 Prunus persica HOM05D003753 ORTHO05D005081 3.6e-13 79.7 180 31.7
Aa31LG8G16560 Aethionema arabicum HOM05D003753 ORTHO05D005081 4.7e-13 79.3 70 60.0
Lj7A675G38 Lonicera japonica HOM05D003753 ORTHO05D005081 4.7e-13 79.3 73 58.9
Cc06_g11340 Coffea canephora HOM05D003753 ORTHO05D005081 6.1e-13 79.0 170 33.5
FAN23G2028 Fragaria x ananassa HOM05D003753 ORTHO05D005081 6.1e-13 79.0 180 34.4
FAN26G1206 Fragaria x ananassa HOM05D003753 ORTHO05D005081 6.1e-13 79.0 180 34.4
FAN26G3279 Fragaria x ananassa HOM05D003753 ORTHO05D005081 6.1e-13 79.0 180 34.4
Oeu018239.1 Olea europaea HOM05D003753 ORTHO05D005081 6.1e-13 79.0 70 60.0
PSO541G3309 Papaver somniferum HOM05D003753 ORTHO05D005081 6.1e-13 79.0 159 35.2
Os11g0134500 Oryza sativa ssp. japonica HOM05D003753 ORTHO05D005081 1.0e-12 78.2 179 33.0
Potri.005G074400 Populus trichocarpa HOM05D003753 ORTHO05D005081 1.0e-12 78.2 70 60.0
SHI20703 Sapria himalayana HOM05D003753 ORTHO05D005081 1.0e-12 78.2 180 32.8
Cpa.g.sc83.92 Carica papaya HOM05D003753 ORTHO05D005081 1.4e-12 77.8 70 57.1
Eucgr.C03892 Eucalyptus grandis HOM05D003753 ORTHO05D005081 1.4e-12 77.8 70 58.6
RcHm_v2.0_Chr2g0093231 Rosa chinensis HOM05D003753 ORTHO05D005081 1.4e-12 77.8 70 57.1
unitig_699.g19554 Utricularia gibba HOM05D003753 ORTHO05D005081 1.8e-12 77.4 179 31.8
FAN23G0946 Fragaria x ananassa HOM05D003753 ORTHO05D005081 2.3e-12 77.0 70 57.1
Peaxi162Scf00083g00426 Petunia axillaris HOM05D003753 ORTHO05D005081 2.3e-12 77.0 72 58.3
Atru.chr7.1580 Acer truncatum HOM05D003753 ORTHO05D005081 3.0e-12 76.6 70 55.7
AT2G19540 Arabidopsis thaliana HOM05D003753 ORTHO05D005081 3.0e-12 76.6 70 58.6
Migut.J00089 Erythranthe guttata HOM05D003753 ORTHO05D005081 3.0e-12 76.6 72 58.3
FvH4_1g07300 Fragaria vesca HOM05D003753 ORTHO05D005081 3.0e-12 76.6 180 33.9
MD15G1206400 Malus domestica HOM05D003753 ORTHO05D005081 3.0e-12 76.6 70 55.7
SGA_v2.0_scaffold75G25039 Striga asiatica HOM05D003753 ORTHO05D005081 3.0e-12 76.6 72 58.3
Manes.08G173100 Manihot esculenta HOM05D003753 ORTHO05D005081 3.9e-12 76.3 184 29.9
Nitab4.5_0005634g0050 Nicotiana tabacum HOM05D003753 ORTHO05D005081 3.9e-12 76.3 72 56.9
Nitab4.5_0011030g0020 Nicotiana tabacum HOM05D003753 ORTHO05D005081 3.9e-12 76.3 72 56.9
PGSC0003DMG400025556 Solanum tuberosum HOM05D003753 ORTHO05D005081 3.9e-12 76.3 72 58.3
Ah.13g077350 Amaranthus hybridus HOM05D003753 ORTHO05D005081 5.2e-12 75.9 70 57.1
MSTRG.18971 Avicennia marina HOM05D003753 ORTHO05D005081 5.2e-12 75.9 72 55.6
CSS0033183 Camellia sinensis var. sinensis HOM05D003753 ORTHO05D005081 5.2e-12 75.9 72 55.6
FAN19G2460 Fragaria x ananassa HOM05D003753 ORTHO05D005081 6.7e-12 75.5 67 58.2
HanXRQChr06g0178531 Helianthus annuus HOM05D003753 ORTHO05D005081 6.7e-12 75.5 72 56.9
Potri.007G094000 Populus trichocarpa HOM05D003753 ORTHO05D005081 8.8e-12 75.1 70 58.6
Dinv42315 Davidia involucrata HOM05D003753 ORTHO05D005081 1.1e-11 74.7 70 54.3
Sabra05G0061300 Salix brachista HOM05D003753 ORTHO05D005081 1.1e-11 74.7 70 58.6
Sabra07G0077800 Salix brachista HOM05D003753 ORTHO05D005081 1.1e-11 74.7 70 58.6
HanXRQChr11g0321581 Helianthus annuus HOM05D003753 ORTHO05D005081 1.5e-11 74.3 72 55.6
Solyc05g014090.3 Solanum lycopersicum HOM05D003753 ORTHO05D005081 1.5e-11 74.3 72 56.9
Sopen05g009100 Solanum pennellii HOM05D003753 ORTHO05D005081 1.5e-11 74.3 72 56.9
CANSAT56G3520 Cannabis sativa HOM05D003753 ORTHO05D005081 2.0e-11 73.9 70 54.3
CAN.G732.16 Capsicum annuum HOM05D003753 ORTHO05D005081 2.0e-11 73.9 72 54.2
Sopen05g009090 Solanum pennellii HOM05D003753 ORTHO05D005081 2.0e-11 73.9 72 56.9
Sopen05g016940 Solanum pennellii HOM05D003753 ORTHO05D005081 2.0e-11 73.9 72 56.9
TAR624G1221 Trochodendron aralioides HOM05D003753 ORTHO05D005081 2.0e-11 73.9 70 52.9
HPP92_012451 Vanilla planifolia HOM05D003753 ORTHO05D005081 2.0e-11 73.9 70 57.1
EL10Ac8g19226 Beta vulgaris HOM05D003753 ORTHO05D005081 2.6e-11 73.6 70 55.7
MBI06_g13419_MAGBIO Magnolia biondii HOM05D003753 ORTHO05D005081 2.6e-11 73.6 70 57.1
Dinv36761 Davidia involucrata HOM05D003753 ORTHO05D005081 4.4e-11 72.8 70 54.3
Actinidia25255 Actinidia chinensis HOM05D003753 ORTHO05D005081 7.4e-11 72.0 180 32.8
BcaC04g22845 Brassica carinata HOM05D003753 ORTHO05D005081 9.7e-11 71.6 170 33.5
C09p14710 Brassica napus HOM05D003753 ORTHO05D005081 9.7e-11 71.6 170 33.5
BolC9t54374H Brassica oleracea HOM05D003753 ORTHO05D005081 9.7e-11 71.6 170 33.5
MBI06_g38946_MAGBIO Magnolia biondii HOM05D003753 ORTHO05D005081 9.7e-11 71.6 70 54.3
CDE06G0756 Ceratophyllum demersum HOM05D003753 ORTHO05D005081 2.2e-10 70.5 68 54.4
ClCG03G015660 Citrullus lanatus HOM05D003753 ORTHO05D005081 2.2e-10 70.5 67 55.2
Medtr8g080700 Medicago truncatula HOM05D003753 ORTHO05D005081 2.8e-10 70.1 180 32.2
THA.LOC104814615 Tarenaya hassleriana HOM05D003753 ORTHO05D005081 2.8e-10 70.1 64 59.4
Thhalv10022672m.g Eutrema salsugineum HOM05D003753 ORTHO05D005081 3.7e-10 69.7 62 61.3
BraA07t27911Z Brassica rapa HOM05D003753 ORTHO05D005081 4.8e-10 69.3 175 33.1
A09p12430 Brassica napus HOM05D003753 ORTHO05D005081 6.3e-10 68.9 63 60.3
BraA09t36888Z Brassica rapa HOM05D003753 ORTHO05D005081 6.3e-10 68.9 63 60.3
CDE08G0675 Ceratophyllum demersum HOM05D003753 ORTHO05D005081 6.3e-10 68.9 68 54.4
Ciclev10010770m.g Citrus clementina HOM05D003753 ORTHO05D005081 8.2e-10 68.6 64 56.2
Actinidia29885 Actinidia chinensis HOM05D003753 ORTHO05D005081 1.1e-09 68.2 67 52.2
DCAR_011977 Daucus carota HOM05D003753 ORTHO05D005081 1.1e-09 68.2 64 57.8
Os12g0132400 Oryza sativa ssp. japonica HOM05D003753 ORTHO05D005081 1.4e-09 67.8 70 52.9
Sp3g32920 Schrenkiella parvula HOM05D003753 ORTHO05D005081 1.4e-09 67.8 60 61.7
Zm00001eb354080 Zea mays HOM05D003753 ORTHO05D005081 1.4e-09 67.8 70 52.9
Ciclev10004888m.g Citrus clementina HOM05D003753 ORTHO05D005081 3.1e-09 66.6 64 56.2
Lalb_Chr07g0187091 Lupinus albus HOM05D003753 ORTHO05D005081 3.1e-09 66.6 62 58.1
PGR102G2098 Punica granatum HOM05D003753 ORTHO05D005081 3.1e-09 66.6 63 57.1
BraA06t25065Z Brassica rapa HOM05D036510 ORTHO05D020007 4.1e-09 66.2 34 94.1
Glyma.08G104700 Glycine max HOM05D003753 ORTHO05D005081 4.1e-09 66.2 62 58.1
Glyma.05G147800 Glycine max HOM05D003753 ORTHO05D005081 5.3e-09 65.9 62 58.1
Rhsim03G0233000 Rhododendron simsii HOM05D003753 ORTHO05D005081 5.3e-09 65.9 64 57.8
VMungo0251G1718 Vigna mungo HOM05D003753 ORTHO05D005081 5.3e-09 65.9 62 58.1
Zm00001eb163470 Zea mays HOM05D003753 ORTHO05D005081 5.3e-09 65.9 70 51.4
CiPaw.08G159100 Carya illinoinensis HOM05D003753 ORTHO05D005081 7.0e-09 65.5 64 53.1
BcaC05g28541 Brassica carinata HOM05D003753 ORTHO05D005081 9.1e-09 65.1 133 37.6
Lj4g0022105 Lotus japonicus HOM05D003753 ORTHO05D005081 9.1e-09 65.1 63 57.1
Sed0008570 Sechium edule HOM05D003753 ORTHO05D005081 9.1e-09 65.1 62 56.5
Sed0009681 Sechium edule HOM05D003753 ORTHO05D005081 9.1e-09 65.1 62 56.5
vmacro06286 Vaccinium macrocarpon HOM05D003753 ORTHO05D005081 9.1e-09 65.1 64 54.7
vmacro23429 Vaccinium macrocarpon HOM05D003753 ORTHO05D005081 9.1e-09 65.1 64 54.7
Cfa003094 Carpinus fangiana HOM05D003753 ORTHO05D005081 1.2e-08 64.7 62 56.5
Ca_18022_v3 Cicer arietinum L. HOM05D003753 ORTHO05D005081 1.2e-08 64.7 62 56.5
Haze_25905 Corylus avellana HOM05D003753 ORTHO05D005081 1.2e-08 64.7 62 56.5
Lsat_1_v5_gn_8_87641 Lactuca sativa HOM05D003753 ORTHO05D005081 1.2e-08 64.7 66 56.1
Lalb_Chr13g0294391 Lupinus albus HOM05D003753 ORTHO05D005081 1.2e-08 64.7 62 56.5
SalBow6G3809 Salvia bowleyana HOM05D003753 ORTHO05D005081 1.6e-08 64.3 64 54.7
Solyc07g039200.4 Solanum lycopersicum HOM05D003753 ORTHO05D005081 2.0e-08 63.9 64 54.7
Gohir.A07G010600 Gossypium hirsutum HOM05D003753 ORTHO05D005081 2.6e-08 63.5 180 30.0
Gohir.D07G010900 Gossypium hirsutum HOM05D003753 ORTHO05D005081 2.6e-08 63.5 180 30.0
Medtr5g024090 Medicago truncatula HOM05D003753 ORTHO05D005081 2.6e-08 63.5 174 31.6
Hund06681 Selenicereus undatus HOM05D003753 ORTHO05D005081 2.6e-08 63.5 62 56.5
Sopen07g017550 Solanum pennellii HOM05D003753 ORTHO05D005081 2.6e-08 63.5 64 54.7
PGSC0003DMG400013154 Solanum tuberosum HOM05D003753 ORTHO05D005081 2.6e-08 63.5 64 54.7
TPR.G17083 Trifolium pratense HOM05D003753 ORTHO05D005081 2.6e-08 63.5 171 31.6
TWI34G0041 Tripterygium wilfordii HOM05D003753 ORTHO05D005081 2.6e-08 63.5 60 58.3
Duzib150G1398 Durio zibethinus HOM05D003753 ORTHO05D005081 3.5e-08 63.2 180 29.4
Duzib187G1746 Durio zibethinus HOM05D003753 ORTHO05D005081 3.5e-08 63.2 60 56.7
Phvul.008G006800 Phaseolus vulgaris HOM05D003753 ORTHO05D005081 3.5e-08 63.2 62 56.5
Thecc.09G090200 Theobroma cacao HOM05D003753 ORTHO05D005081 3.5e-08 63.2 60 56.7
COL.COLO4_18208 Corchorus olitorius HOM05D003753 ORTHO05D005081 4.5e-08 62.8 60 55.0
Nn8g38881 Nelumbo nucifera HOM05D003753 ORTHO05D005081 4.5e-08 62.8 62 53.2
QL02p062809 Quercus lobata HOM05D003753 ORTHO05D005081 4.5e-08 62.8 59 57.6
GSVIVG01015210001 Vitis vinifera HOM05D003753 ORTHO05D005081 4.5e-08 62.8 59 57.6
MELO3C015462.2 Cucumis melo HOM05D003753 ORTHO05D005081 5.9e-08 62.4 62 54.8
CsaV3_1G040350 Cucumis sativus L. HOM05D003753 ORTHO05D005081 5.9e-08 62.4 62 54.8
SEGI_09916 Sequoiadendron giganteum HOM05D003753 ORTHO05D005081 5.9e-08 62.4 131 31.3
arahy.Tifrunner.gnm1.ann1.JW8PS1 Arachis hypogaea HOM05D003753 ORTHO05D005081 7.7e-08 62.0 61 55.7
CiPaw.08G138800 Carya illinoinensis HOM05D003753 ORTHO05D005081 7.7e-08 62.0 60 53.3
Sc18g0002060 Simmondsia chinensis HOM05D003753 ORTHO05D005081 7.7e-08 62.0 62 54.8
Gorai.001G011300 Gossypium raimondii HOM05D003753 ORTHO05D005081 1.0e-07 61.6 60 56.7
PSO210G0422 Papaver somniferum HOM05D003753 ORTHO05D005081 1.0e-07 61.6 62 54.8
PSO210G4643 Papaver somniferum HOM05D003753 ORTHO05D005081 1.0e-07 61.6 62 54.8
Pp3c12_16950 Physcomitrium patens HOM05D003753 ORTHO05D005081 1.0e-07 61.6 70 45.7
SEGI_14219 Sequoiadendron giganteum HOM05D003753 ORTHO05D005081 1.0e-07 61.6 64 51.6
ATR0807G172 Amborella trichopoda HOM05D003753 ORTHO05D005081 2.9e-07 60.1 66 51.5
Cre17.g724850 Chlamydomonas reinhardtii HOM05D003753 ORTHO05D005081 2.9e-07 60.1 74 44.6
TAR626G1791 Trochodendron aralioides HOM05D003753 ORTHO05D014439 2.9e-07 60.1 61 50.8
A07p01230 Brassica napus HOM05D003753 ORTHO05D005081 6.5e-07 58.9 54 57.4
Solyc05g018780.1 Solanum lycopersicum HOM05D003753 ORTHO05D005081 6.5e-07 58.9 63 54.0
arahy.Tifrunner.gnm1.ann1.D26Z0K Arachis hypogaea HOM05D003753 ORTHO05D005081 8.5e-07 58.5 61 54.1
CBR_g58801 Chara braunii HOM05D003753 ORTHO05D005081 1.9e-06 57.4 68 54.4
Mapoly0090s0067 Marchantia polymorpha HOM05D003753 ORTHO05D005081 2.5e-06 57.0 64 45.3
SMO169G0114 Selaginella moellendorffii HOM05D003753 ORTHO05D005081 2.5e-06 57.0 123 30.1


User provided reference genes

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