Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p13430 Brassica napus HOM05D005631 ORTHO05D006765 4.3e-24 114.0 65 100.0
A08p25520 Brassica napus HOM05D005631 ORTHO05D006765 1.1e-22 109.4 66 98.5
BcaC09g51457 Brassica carinata HOM05D005631 ORTHO05D006765 9.0e-22 106.3 66 95.5
BcaC04g19866 Brassica carinata HOM05D005631 ORTHO05D006765 2.0e-21 105.1 65 93.8
BolC9t57889H Brassica oleracea HOM05D005631 ORTHO05D006765 2.0e-21 105.1 65 93.8
A10p15820 Brassica napus HOM05D005631 ORTHO05D006765 2.6e-21 104.8 65 93.8
BcaC05g26847 Brassica carinata HOM05D005631 ORTHO05D006765 3.4e-21 104.4 65 93.8
A03p12230 Brassica napus HOM05D005631 ORTHO05D006765 4.5e-21 104.0 65 92.3
C03p14340 Brassica napus HOM05D005631 ORTHO05D006765 4.5e-21 104.0 65 92.3
BolC3t13878H Brassica oleracea HOM05D005631 ORTHO05D006765 4.5e-21 104.0 65 92.3
BraA03t10534Z Brassica rapa HOM05D005631 ORTHO05D006765 4.5e-21 104.0 65 92.3
BcaB01g04521 Brassica carinata HOM05D005631 ORTHO05D006765 5.8e-21 103.6 65 92.3
C09p50330 Brassica napus HOM05D005631 ORTHO05D006765 5.8e-21 103.6 65 92.3
BraA10t43643Z Brassica rapa HOM05D005631 ORTHO05D006765 5.8e-21 103.6 65 92.3
BcaB08g36180 Brassica carinata HOM05D005631 ORTHO05D006765 1.0e-20 102.8 65 92.3
BcaC08g44597 Brassica carinata HOM05D005631 ORTHO05D006765 2.9e-20 101.3 67 92.5
BolC1t05347H Brassica oleracea HOM05D005631 ORTHO05D006765 6.5e-20 100.1 66 89.4
AT5G37055 Arabidopsis thaliana HOM05D005631 ORTHO05D006765 1.1e-19 99.4 65 86.2
BcaC09g51408 Brassica carinata HOM05D005631 ORTHO05D006765 2.5e-19 98.2 66 89.4
Carub.0007s3232 Capsella rubella HOM05D005631 ORTHO05D006765 2.5e-19 98.2 63 88.9
AL7G45820 Arabidopsis lyrata HOM05D005631 ORTHO05D006765 3.2e-19 97.8 65 84.6
Sp6g20150 Schrenkiella parvula HOM05D000127 ORTHO05D007184 3.2e-19 97.8 65 84.6
Thhalv10014837m.g Eutrema salsugineum HOM05D005631 ORTHO05D006765 5.5e-19 97.1 65 86.2
CARHR272280 Cardamine hirsuta HOM05D005631 ORTHO05D006765 1.2e-18 95.9 63 84.1
Aa31LG11G240 Aethionema arabicum HOM05D000127 ORTHO05D007184 6.0e-18 93.6 65 80.0
THA.LOC104810692 Tarenaya hassleriana HOM05D005631 ORTHO05D006765 3.9e-17 90.9 65 78.5
BcaC02g08205 Brassica carinata HOM05D005631 ORTHO05D006765 1.8e-14 82.0 50 90.0
Cpa.g.sc2.358 Carica papaya HOM05D005631 ORTHO05D006765 5.3e-14 80.5 62 71.0
HanXRQChr10g0284941 Helianthus annuus HOM05D005631 ORTHO05D006765 3.4e-13 77.8 63 74.6
Duzib150G1412 Durio zibethinus HOM05D005631 ORTHO05D006765 5.9e-13 77.0 61 72.1
FvH4_3g39740 Fragaria vesca HOM05D005631 ORTHO05D006765 5.9e-13 77.0 59 76.3
FAN11G1428 Fragaria x ananassa HOM05D005631 ORTHO05D006765 5.9e-13 77.0 59 76.3
FAN16G0042 Fragaria x ananassa HOM05D005631 ORTHO05D006765 5.9e-13 77.0 59 76.3
RcHm_v2.0_Chr5g0071621 Rosa chinensis HOM05D005631 ORTHO05D006765 5.9e-13 77.0 59 76.3
EL10Ac7g15917 Beta vulgaris HOM05D005631 ORTHO05D006765 7.6e-13 76.6 60 70.0
GSVIVG01033331001 Vitis vinifera HOM05D005631 ORTHO05D006765 1.0e-12 76.3 60 70.0
MD03G1056300 Malus domestica HOM05D005631 ORTHO05D006765 1.3e-12 75.9 59 72.9
FAN21G1424 Fragaria x ananassa HOM05D005631 ORTHO05D006765 1.7e-12 75.5 59 76.3
Prupe.6G048500 Prunus persica HOM05D005631 ORTHO05D006765 1.7e-12 75.5 61 70.5
C01p12950 Brassica napus HOM05D005631 ORTHO05D006765 2.9e-12 74.7 47 95.7
Gohir.A03G025600 Gossypium hirsutum HOM05D005631 ORTHO05D006765 2.9e-12 74.7 61 70.5
Gohir.D03G142900 Gossypium hirsutum HOM05D005631 ORTHO05D006765 2.9e-12 74.7 61 70.5
Gorai.003G150100 Gossypium raimondii HOM05D005631 ORTHO05D006765 2.9e-12 74.7 61 70.5
Thecc.09G357600 Theobroma cacao HOM05D005631 ORTHO05D006765 2.9e-12 74.7 59 71.2
Actinidia23857 Actinidia chinensis HOM05D005631 ORTHO05D006765 3.8e-12 74.3 61 68.9
CANSAT54G1076 Cannabis sativa HOM05D005631 ORTHO05D006765 3.8e-12 74.3 60 70.0
Cfa011776 Carpinus fangiana HOM05D005631 ORTHO05D006765 5.0e-12 73.9 61 67.2
Nn1g05206 Nelumbo nucifera HOM05D005631 ORTHO05D006765 5.0e-12 73.9 57 71.9
FAN25G2299 Fragaria x ananassa HOM05D005631 ORTHO05D006765 8.4e-12 73.2 59 72.9
C01p13430 Brassica napus HOM05D005631 ORTHO05D006765 1.1e-11 72.8 47 93.6
Manes.02G211700 Manihot esculenta HOM05D005631 ORTHO05D006765 1.1e-11 72.8 60 70.0
PSO349G0142 Papaver somniferum HOM05D005631 ORTHO05D006765 1.1e-11 72.8 62 69.4
Zm00001eb195120 Zea mays HOM05D005631 ORTHO05D006765 1.1e-11 72.8 59 71.2
Lsat_1_v5_gn_6_47101 Lactuca sativa HOM05D005631 ORTHO05D006765 1.4e-11 72.4 60 71.7
Hund18954 Selenicereus undatus HOM05D000127 ORTHO05D006765 1.4e-11 72.4 60 68.3
AUR62009671 Chenopodium quinoa HOM05D005631 ORTHO05D006765 1.9e-11 72.0 58 70.7
MELO3C025697.2 Cucumis melo HOM05D005631 ORTHO05D006765 1.9e-11 72.0 59 72.9
Glyma.11G164100 Glycine max HOM05D005631 ORTHO05D006765 1.9e-11 72.0 62 71.0
Glyma.18G057300 Glycine max HOM05D005631 ORTHO05D006765 1.9e-11 72.0 60 73.3
arahy.Tifrunner.gnm1.ann1.7E53FC Arachis hypogaea HOM05D005631 ORTHO05D006765 2.5e-11 71.6 62 72.6
CSS0000896 Camellia sinensis var. sinensis HOM05D005631 ORTHO05D006765 2.5e-11 71.6 59 67.8
ClCG02G019260 Citrullus lanatus HOM05D005631 ORTHO05D006765 2.5e-11 71.6 59 72.9
CsaV3_6G015890 Cucumis sativus L. HOM05D005631 ORTHO05D006765 2.5e-11 71.6 59 72.9
MD11G1057500 Malus domestica HOM05D005631 ORTHO05D006765 2.5e-11 71.6 59 71.2
Rhsim01G0240900 Rhododendron simsii HOM05D005631 ORTHO05D006765 2.5e-11 71.6 61 67.2
AUR62001872 Chenopodium quinoa HOM05D005631 ORTHO05D006765 3.2e-11 71.2 58 72.4
Hma1.2p1_1586F.1_g292190 Hydrangea macrophylla HOM05D005631 ORTHO05D006765 3.2e-11 71.2 59 69.5
vmacro14621 Vaccinium macrocarpon HOM05D005631 ORTHO05D006765 3.2e-11 71.2 59 71.2
Actinidia34479 Actinidia chinensis HOM05D005631 ORTHO05D006765 4.2e-11 70.9 59 69.5
ATR0304G021 Amborella trichopoda HOM05D005631 ORTHO05D006765 4.2e-11 70.9 61 65.6
C04p57300 Brassica napus HOM05D005631 ORTHO05D006765 4.2e-11 70.9 47 89.4
MBI18_g07568_MAGBIO Magnolia biondii HOM05D005631 ORTHO05D006765 4.2e-11 70.9 60 68.3
Medtr3g465690 Medicago truncatula HOM05D005631 ORTHO05D006765 4.2e-11 70.9 64 67.2
HPP92_019076 Vanilla planifolia HOM05D005631 ORTHO05D006765 4.2e-11 70.9 61 68.9
CDE09G1253 Ceratophyllum demersum HOM05D001009 ORTHO05D000829 5.5e-11 70.5 60 66.7
Ca_15008_v3 Cicer arietinum L. HOM05D005631 ORTHO05D006765 5.5e-11 70.5 60 71.7
Ca_15010_v3 Cicer arietinum L. HOM05D005631 ORTHO05D006765 5.5e-11 70.5 60 71.7
Phvul.006G073900 Phaseolus vulgaris HOM05D005631 ORTHO05D006765 7.2e-11 70.1 60 71.7
DCAR_004046 Daucus carota HOM05D005631 ORTHO05D006765 9.3e-11 69.7 60 66.7
Lalb_Chr15g0083281 Lupinus albus HOM05D005631 ORTHO05D006765 9.3e-11 69.7 62 67.7
QL01p026260 Quercus lobata HOM05D005631 ORTHO05D006765 9.3e-11 69.7 59 66.1
arahy.Tifrunner.gnm1.ann1.I7JS5F Arachis hypogaea HOM05D005631 ORTHO05D006765 1.2e-10 69.3 57 75.4
Oeu008095.1 Olea europaea HOM05D005631 ORTHO05D006765 1.2e-10 69.3 59 67.8
Oeu059694.1 Olea europaea HOM05D005631 ORTHO05D006765 1.2e-10 69.3 61 65.6
SGA_v2.0_scaffold18G08260 Striga asiatica HOM05D005631 ORTHO05D006765 1.2e-10 69.3 59 67.8
Potri.013G152600 Populus trichocarpa HOM05D005631 ORTHO05D006765 1.6e-10 68.9 61 68.9
Sabra13G0122700 Salix brachista HOM05D005631 ORTHO05D006765 1.6e-10 68.9 61 68.9
CiPaw.13G069500 Carya illinoinensis HOM05D005631 ORTHO05D006765 2.7e-10 68.2 61 60.7
Atru.chr3.4122 Acer truncatum HOM05D005631 ORTHO05D006765 3.5e-10 67.8 62 66.1
MSTRG.2645 Avicennia marina HOM05D005631 ORTHO05D006765 3.5e-10 67.8 54 72.2
Migut.H00695 Erythranthe guttata HOM05D005631 ORTHO05D006765 3.5e-10 67.8 59 64.4
Lj6g0005877 Lotus japonicus HOM05D005631 ORTHO05D006765 4.6e-10 67.4 60 70.0
Ciclev10029319m.g Citrus clementina HOM05D005631 ORTHO05D006765 6.1e-10 67.0 57 70.2
PGR102G0278 Punica granatum HOM05D005631 ORTHO05D006765 6.1e-10 67.0 57 70.2
SGA_v2.0_scaffold20G09058 Striga asiatica HOM05D005631 ORTHO05D006765 1.3e-09 65.9 59 69.5
Nitab4.5_0003548g0030 Nicotiana tabacum HOM05D005631 ORTHO05D006765 1.8e-09 65.5 61 63.9
SalBow1G1570 Salvia bowleyana HOM05D005631 ORTHO05D006765 2.3e-09 65.1 55 69.1
Os03g0367800 Oryza sativa ssp. japonica HOM05D005631 ORTHO05D006765 3.9e-09 64.3 60 68.3
Sed0015217 Sechium edule HOM05D005631 ORTHO05D006765 3.9e-09 64.3 59 66.1
TAR633G1157 Trochodendron aralioides HOM05D005631 ORTHO05D006765 3.9e-09 64.3 50 74.0
Solyc03g033480.4 Solanum lycopersicum HOM05D005631 ORTHO05D006765 5.1e-09 63.9 61 63.9
Sopen03g006230 Solanum pennellii HOM05D005631 ORTHO05D006765 5.1e-09 63.9 61 63.9
PGSC0003DMG400022531 Solanum tuberosum HOM05D005631 ORTHO05D006765 5.1e-09 63.9 61 63.9
Psat5g026160 Pisum sativum HOM05D005631 ORTHO05D006765 6.7e-09 63.5 57 70.2
TPR.G25706 Trifolium pratense HOM05D005631 ORTHO05D006765 6.7e-09 63.5 62 64.5
Eucgr.B04002 Eucalyptus grandis HOM05D005631 ORTHO05D006765 8.7e-09 63.2 50 76.0
Sc21g0005270 Simmondsia chinensis HOM05D005631 ORTHO05D006765 1.1e-08 62.8 49 75.5
VMungo1383G2760 Vigna mungo HOM05D005631 ORTHO05D006765 2.5e-08 61.6 47 72.3
Sabra06G0125700 Salix brachista HOM05D005631 ORTHO05D006765 3.3e-08 61.2 61 62.3
CAN.G354.39 Capsicum annuum HOM05D005631 ORTHO05D006765 2.2e-07 58.5 62 62.9
Nitab4.5_0000438g0150 Nicotiana tabacum HOM05D005631 ORTHO05D006765 6.3e-07 57.0 61 60.7
ECA248G0403 Erigeron canadensis HOM05D005631 ORTHO05D006765 1.4e-06 55.8 49 71.4
unitig_899.g14680 Utricularia gibba HOM05D005631 ORTHO05D006765 1.8e-06 55.5 47 70.2
Mapoly0066s0110 Marchantia polymorpha HOM05D005631 ORTHO05D006765 3.1e-06 54.7 61 54.1
Cc07_g10850 Coffea canephora HOM05D005631 ORTHO05D006765 9.0e-06 53.1 49 67.3


User provided reference genes

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