Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1706.4 823 100.0
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1553.9 821 92.4
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 0.0e+00 1541.9 824 91.5
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 0.0e+00 1506.9 825 89.0
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 0.0e+00 1486.5 827 88.0
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1481.1 826 88.6
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1459.9 838 85.0
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1458.0 832 86.1
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 0.0e+00 1385.9 823 81.4
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1326.6 825 79.3
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1324.7 824 78.9
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1278.5 761 82.4
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1236.1 809 73.8
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1233.0 809 73.3
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1229.9 809 72.7
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1216.4 841 70.3
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1211.8 812 72.5
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1211.8 821 71.6
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 0.0e+00 1211.4 811 72.6
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1206.4 821 71.4
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 0.0e+00 1205.3 808 72.2
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1200.7 848 69.7
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 0.0e+00 1186.8 836 69.5
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 0.0e+00 1146.7 840 68.1
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 0.0e+00 1108.2 810 68.0
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 0.0e+00 1100.1 813 64.3
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 0.0e+00 1091.3 813 64.2
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1090.1 813 64.1
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1081.6 812 63.7
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 0.0e+00 1078.5 800 64.0
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 2.8e-311 1071.6 813 63.3
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 1.6e-309 1065.8 805 62.7
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 4.7e-309 1064.3 813 62.2
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 2.3e-308 1062.0 813 62.0
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 1.2e-307 1059.7 805 63.1
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 1.5e-307 1059.3 805 63.2
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 2.2e-306 1055.4 808 63.1
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 8.3e-306 1053.5 811 62.8
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 3.2e-305 1051.6 805 62.4
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 2.7e-304 1048.5 803 63.1
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.0e-303 1046.6 814 61.5
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 1.0e-303 1046.6 802 62.0
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 3.0e-303 1045.0 807 61.7
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 1.2e-301 1039.6 816 60.7
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.6e-301 1039.3 814 61.3
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 2.1e-301 1038.9 807 62.0
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 6.2e-301 1037.3 822 61.2
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 3.1e-300 1035.0 810 61.1
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 2.6e-299 1031.9 805 61.4
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 4.4e-299 1031.2 805 60.9
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 1.3e-298 1029.6 807 61.2
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 1.7e-298 1029.2 802 61.1
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 1.7e-298 1029.2 810 60.4
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 1.4e-297 1026.2 802 61.1
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 2.4e-297 1025.4 804 61.1
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 6.0e-296 1020.8 800 60.1
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 7.8e-296 1020.4 807 60.0
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 1.7e-295 1019.2 841 59.1
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 2.3e-295 1018.8 807 60.0
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 5.1e-295 1017.7 809 60.4
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 1.5e-294 1016.1 800 60.1
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 5.6e-294 1014.2 780 61.9
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 9.5e-294 1013.4 843 58.4
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 4.0e-292 1008.1 806 59.4
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 4.0e-292 1008.1 812 59.1
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 5.2e-292 1007.7 805 60.0
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 6.8e-292 1007.3 807 60.2
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 8.9e-292 1006.9 804 60.4
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 4.4e-291 1004.6 814 58.6
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 4.4e-291 1004.6 804 59.3
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 2.2e-290 1002.3 814 58.6
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 2.2e-290 1002.3 812 60.5
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 1.4e-289 999.6 803 59.2
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 1.9e-289 999.2 806 59.2
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 3.2e-289 998.4 774 62.5
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 3.2e-289 998.4 806 59.6
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 4.1e-289 998.0 768 62.4
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 5.4e-289 997.7 806 59.2
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 1.6e-288 996.1 804 60.1
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 1.6e-288 996.1 805 60.1
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 7.8e-288 993.8 804 59.3
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 1.3e-287 993.0 804 58.7
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 3.9e-287 991.5 804 60.0
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 5.1e-287 991.1 922 53.7
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 7.3e-286 987.3 806 58.3
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 2.1e-285 985.7 798 59.9
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 1.8e-284 982.6 808 58.3
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 2.4e-284 982.2 813 58.3
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 2.6e-283 978.8 813 57.9
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 4.4e-283 978.0 807 61.7
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 2.9e-282 975.3 806 57.8
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 6.4e-282 974.2 810 57.9
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 7.1e-281 970.7 786 59.8
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 4.6e-280 968.0 806 57.2
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 1.0e-279 966.8 806 57.1
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 7.3e-278 960.7 807 56.9
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 5.3e-276 954.5 819 57.4
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 2.0e-275 952.6 824 57.0
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 3.4e-275 951.8 819 57.1
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 5.8e-275 951.0 800 57.0
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 3.8e-274 948.3 785 57.5
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 3.2e-273 945.3 813 56.6
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 2.1e-272 942.6 805 56.4
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 1.0e-271 940.3 812 57.1
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 1.3e-271 939.9 806 57.1
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 6.6e-271 937.6 803 54.5
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 1.4e-268 929.9 760 59.6
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 2.4e-268 929.1 808 53.8
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 1.6e-264 916.4 805 56.4
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 2.3e-263 912.5 831 57.6
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 6.7e-263 911.0 791 56.3
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 7.4e-262 907.5 751 58.5
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 2.2e-258 896.0 836 53.2
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 1.4e-257 893.3 802 54.7
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 1.4e-252 876.7 801 53.2
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 1.8e-252 876.3 729 59.5
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 5.3e-252 874.8 871 51.1
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 3.5e-248 862.1 803 53.2
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 5.0e-242 841.6 807 55.5
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 1.1e-241 840.5 813 51.9
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 5.9e-227 791.6 506 73.9
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 1.1e-225 787.3 819 48.0
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 4.0e-223 778.9 830 47.5
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 3.2e-209 732.6 811 44.9
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 1.2e-208 730.7 700 56.9
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 8.0e-208 728.0 612 57.7
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 5.7e-206 721.8 823 43.9
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 2.0e-195 686.8 657 52.5
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 9.8e-182 641.3 697 45.6
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 1.7e-178 630.6 554 55.4
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 4.7e-176 622.5 468 61.8
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 2.3e-175 620.2 607 56.3
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 4.0e-175 619.4 694 48.3
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.5e-174 617.5 468 60.3
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 1.3e-152 544.7 458 56.1
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 4.0e-151 539.7 538 49.8
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 4.5e-150 536.2 897 35.7
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 1.8e-146 524.2 484 54.1
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 1.1e-143 515.0 532 48.7
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 6.7e-122 442.6 321 62.3
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 9.7e-113 412.1 904 34.3
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 1.1e-108 398.7 270 67.4
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 1.3e-101 375.2 337 55.5
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 1.6e-99 368.2 339 55.8
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 1.5e-97 361.7 355 53.2
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 3.5e-86 323.9 734 31.5
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 7.3e-84 316.2 243 60.5
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 4.6e-78 297.0 326 49.1
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 4.0e-74 283.9 298 50.3
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 1.3e-72 278.9 559 30.9
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 1.3e-72 278.9 318 47.2
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 2.4e-63 248.1 202 58.4
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 2.4e-47 194.9 136 64.7
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 5.1e-45 187.2 125 69.6
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 3.8e-40 171.0 169 50.9
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 1.2e-38 166.0 132 57.6
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 3.0e-37 161.4 108 71.3
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 6.2e-35 153.7 194 43.3
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 1.3e-24 119.4 81 65.4
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 1.6e-22 112.5 86 62.8
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 6.0e-22 110.5 70 72.9
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 2.4e-18 98.6 191 33.0
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 7.6e-17 93.6 84 51.2
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 1.3e-16 92.8 84 48.8
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 6.5e-16 90.5 96 46.9
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 7.2e-15 87.0 60 66.7
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 7.2e-15 87.0 40 95.0
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 2.1e-14 85.5 44 86.4
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 3.0e-13 81.6 103 45.6
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 3.0e-13 81.6 103 45.6
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 2.5e-12 78.6 42 78.6
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 2.2e-11 75.5 39 82.1
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 4.8e-11 74.3 45 64.4
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 1.8e-10 72.4 57 57.9
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 2.0e-09 68.9 44 65.9
TPR.G36369 Trifolium pratense HOM05D004097 ORTHO05D001670 7.7e-09 67.0 62 56.5


User provided reference genes

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