Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p11470 Brassica napus HOM05D004931 ORTHO05D006579 4.9e-117 424.5 212 100.0
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 3.3e-97 358.6 264 73.9
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 2.8e-96 355.5 272 71.7
BraA07t28936Z Brassica rapa HOM05D004931 ORTHO05D006579 2.4e-95 352.4 175 100.0
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 1.2e-94 350.1 272 71.0
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 3.8e-85 318.5 301 61.8
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 3.2e-84 315.5 300 61.3
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 1.6e-83 313.2 301 60.8
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 6.0e-83 311.2 297 60.6
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 3.9e-82 308.5 292 62.0
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 3.9e-82 308.5 302 59.9
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 8.7e-82 307.4 301 58.1
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 1.6e-80 303.1 295 59.7
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 4.8e-80 301.6 293 60.4
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 2.4e-79 299.3 293 59.7
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 2.4e-76 289.3 317 54.9
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 5.4e-76 288.1 303 56.4
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 4.6e-75 285.0 318 54.7
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 7.9e-75 284.3 293 55.6
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 1.3e-72 276.9 314 54.5
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 2.8e-64 249.2 292 50.0
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 4.8e-64 248.4 297 49.5
Hund26708 Selenicereus undatus HOM05D004931 ORTHO05D006579 4.8e-64 248.4 229 56.8
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 8.2e-64 247.7 285 49.8
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 1.4e-63 246.9 285 49.8
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 1.8e-63 246.5 259 54.1
RcHm_v2.0_Chr4g0428911 Rosa chinensis HOM05D004931 ORTHO05D006579 1.8e-63 246.5 253 53.8
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 5.3e-63 245.0 280 50.4
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 1.5e-62 243.4 290 49.3
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 1.5e-62 243.4 285 48.1
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 1.5e-62 243.4 285 48.4
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 2.6e-62 242.7 281 48.8
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 2.6e-62 242.7 276 50.4
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 3.4e-62 242.3 303 47.2
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 4.5e-62 241.9 303 46.9
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 1.0e-61 240.7 286 49.0
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 1.3e-61 240.4 287 47.0
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 1.3e-61 240.4 284 49.3
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 1.7e-61 240.0 287 48.4
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 1.7e-61 240.0 303 46.5
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 2.2e-61 239.6 291 48.1
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 2.2e-61 239.6 264 52.7
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 2.2e-61 239.6 265 51.7
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 2.9e-61 239.2 303 46.9
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 2.9e-61 239.2 286 47.9
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 3.8e-61 238.8 303 46.5
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 3.8e-61 238.8 302 48.7
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 5.0e-61 238.4 259 51.0
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 5.0e-61 238.4 298 47.7
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 6.5e-61 238.0 264 51.9
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 8.4e-61 237.7 255 51.4
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 8.4e-61 237.7 285 48.4
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 8.4e-61 237.7 262 51.5
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 1.9e-60 236.5 250 53.6
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 2.5e-60 236.1 280 48.9
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 4.2e-60 235.3 274 48.9
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 7.2e-60 234.6 281 48.8
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 1.2e-59 233.8 243 52.7
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 1.2e-59 233.8 285 48.4
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 1.2e-59 233.8 321 44.9
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 1.6e-59 233.4 301 45.5
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 2.1e-59 233.0 280 48.2
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 2.1e-59 233.0 287 46.7
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 2.7e-59 232.6 282 48.6
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 3.5e-59 232.3 306 47.1
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 1.0e-58 230.7 302 45.7
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 1.3e-58 230.3 301 46.2
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 1.8e-58 229.9 304 46.4
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 2.3e-58 229.6 285 48.1
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 3.9e-58 228.8 297 45.1
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 3.9e-58 228.8 297 45.1
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 3.9e-58 228.8 243 51.4
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 6.7e-58 228.0 315 44.8
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 8.7e-58 227.6 290 45.9
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 3.3e-57 225.7 284 45.8
Actinidia31350 Actinidia chinensis HOM05D004931 ORTHO05D006579 4.3e-57 225.3 272 48.9
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 4.3e-57 225.3 260 49.6
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 4.3e-57 225.3 296 45.6
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 9.7e-57 224.2 279 47.0
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 1.3e-56 223.8 254 49.6
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 1.6e-56 223.4 290 45.9
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 2.2e-56 223.0 325 44.3
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 2.8e-56 222.6 292 45.5
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 2.8e-56 222.6 279 45.5
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 6.3e-56 221.5 262 47.7
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 8.2e-56 221.1 290 45.9
Lalb_Chr15g0090151 Lupinus albus HOM05D004931 ORTHO05D006579 1.8e-55 219.9 195 61.0
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 2.4e-55 219.5 282 46.5
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 2.4e-55 219.5 289 44.6
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 5.3e-55 218.4 290 44.8
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 6.9e-55 218.0 357 40.3
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 9.0e-55 217.6 282 46.1
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 9.0e-55 217.6 150 68.7
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 2.6e-54 216.1 300 43.3
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 1.0e-53 214.2 288 44.4
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 2.9e-53 212.6 281 44.8
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 5.0e-53 211.8 276 45.3
Peaxi162Scf00128g01757 Petunia axillaris HOM05D004931 ORTHO05D006579 6.5e-53 211.5 155 67.7
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 3.2e-52 209.1 283 45.2
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 6.1e-51 204.9 279 44.8
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 7.9e-51 204.5 262 48.1
SMO358G0085 Selaginella moellendorffii HOM05D004931 ORTHO05D006579 6.7e-50 201.4 154 63.0
AagrBONN_evm.TU.Sc2ySwM_26.3 Anthoceros agrestis HOM05D004931 ORTHO05D006579 8.8e-50 201.1 154 64.9
AagrBONN_evm.TU.Sc2ySwM_368.2426 Anthoceros agrestis HOM05D004931 ORTHO05D006579 8.8e-50 201.1 154 64.9
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 7.4e-49 198.0 155 63.2
CAN.G465.9 Capsicum annuum HOM05D004931 ORTHO05D006579 9.7e-49 197.6 177 57.6
Eucgr.B03557 Eucalyptus grandis HOM05D004931 ORTHO05D006579 1.4e-47 193.7 120 75.0
PSO832G0491 Papaver somniferum HOM05D004931 ORTHO05D006579 1.8e-47 193.4 160 61.2
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 3.1e-47 192.6 238 45.8
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 6.9e-47 191.4 288 41.3
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 6.9e-47 191.4 227 48.5
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 9.1e-47 191.0 265 44.9
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 1.2e-46 190.7 154 62.3
Lalb_Chr18g0060061 Lupinus albus HOM05D004931 ORTHO05D006579 2.2e-45 186.4 120 72.5
PGSC0003DMG402006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 7.9e-43 177.9 119 69.7
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 1.0e-42 177.6 231 47.6
Pp3c5_2520 Physcomitrium patens HOM05D004931 ORTHO05D006579 1.4e-42 177.2 157 59.2
Pp3c6_24540 Physcomitrium patens HOM05D004931 ORTHO05D006579 2.6e-41 172.9 158 57.0
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 9.1e-39 164.5 238 42.9
Sabra01G0046800 Salix brachista HOM05D004931 ORTHO05D006579 9.1e-39 164.5 249 42.6
MBI10_g42797_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 1.6e-38 163.7 243 41.6
MBI07_g35974_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 8.5e-37 157.9 290 37.9
PSO170G5257 Papaver somniferum HOM05D004650 ORTHO05D005715 5.2e-34 148.7 120 61.7
CBR_g45420 Chara braunii HOM05D000019 ORTHO05D000048 8.8e-34 147.9 138 57.2
Cre10.g441500 Chlamydomonas reinhardtii HOM05D004931 ORTHO05D006579 4.5e-30 135.6 164 43.9
Haze_27431 Corylus avellana HOM05D004931 ORTHO05D006579 9.8e-25 117.9 148 45.3
Sc17g0004710 Simmondsia chinensis HOM05D004931 ORTHO05D006579 2.2e-24 116.7 78 71.8
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 3.8e-21 105.9 200 36.5
BolC2t10441H Brassica oleracea HOM05D004931 ORTHO05D027277 2.5e-20 103.2 56 91.1
PRCOL_00001027 Prasinoderma coloniale HOM05D004931 ORTHO05D006579 3.2e-20 102.8 160 38.1
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 4.2e-20 102.4 224 37.5
ECA238G1930 Erigeron canadensis HOM05D000406 ORTHO05D006918 3.6e-19 99.4 56 80.4
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 3.6e-19 99.4 198 35.9
C01p27720 Brassica napus HOM05D004931 ORTHO05D027277 6.8e-18 95.1 50 90.0
BcaC03g16580 Brassica carinata HOM05D004931 ORTHO05D027277 2.3e-13 80.1 41 92.7
BcaB03g12135 Brassica carinata HOM05D004931 ORTHO05D006579 7.3e-12 75.1 70 61.4
Os02g0521600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D037234 8.9e-10 68.2 161 29.2
Zm00001eb242070 Zea mays HOM05D004931 ORTHO05D037234 3.2e-07 59.7 127 33.1


User provided reference genes

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