Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p10200 Brassica napus HOM05D005404 ORTHO05D006623 4.3e-153 544.7 284 100.0
BolC7t42063H Brassica oleracea HOM05D005404 ORTHO05D006623 4.2e-55 219.2 150 84.7
BraA07t28813Z Brassica rapa HOM05D005404 ORTHO05D006623 4.2e-55 219.2 151 86.1
BcaB03g13855 Brassica carinata HOM05D005404 ORTHO05D006623 5.1e-53 212.2 165 77.6
Sp1g25740 Schrenkiella parvula HOM05D005404 ORTHO05D006623 1.1e-52 211.1 165 77.0
BcaC06g35468 Brassica carinata HOM05D005404 ORTHO05D006623 2.5e-52 209.9 165 76.4
BcaC01g00143 Brassica carinata HOM05D005404 ORTHO05D006623 4.3e-52 209.1 165 76.4
A08p24810 Brassica napus HOM05D003390 ORTHO05D004189 7.4e-52 208.4 164 76.8
BcaB07g32570 Brassica carinata HOM05D005404 ORTHO05D006623 9.6e-52 208.0 121 95.9
Thhalv10009098m.g Eutrema salsugineum HOM05D005404 ORTHO05D006623 1.6e-51 207.2 165 75.8
BraA08t34436Z Brassica rapa HOM05D003390 ORTHO05D004189 3.6e-51 206.1 158 80.4
C05p28570 Brassica napus HOM05D005404 ORTHO05D006623 4.8e-51 205.7 121 95.0
BcaB03g12183 Brassica carinata HOM05D005404 ORTHO05D006623 5.3e-50 202.2 166 75.3
BolC3t19881H Brassica oleracea HOM05D005404 ORTHO05D006623 6.9e-50 201.8 152 81.6
BcaC05g26997 Brassica carinata HOM05D005404 ORTHO05D006623 1.2e-49 201.1 122 94.3
CARHR029600 Cardamine hirsuta HOM05D005404 ORTHO05D006623 1.2e-49 201.1 121 91.7
BolC5t31581H Brassica oleracea HOM05D005404 ORTHO05D006623 2.6e-49 199.9 121 95.0
PSO017G4964 Papaver somniferum HOM05D005404 ORTHO05D006623 1.8e-45 187.2 121 87.6
Thecc.06G156200 Theobroma cacao HOM05D005404 ORTHO05D006623 3.9e-45 186.0 121 85.1
Duzib101G0001 Durio zibethinus HOM05D005404 ORTHO05D006623 6.7e-45 185.3 121 86.0
Duzib192G1075 Durio zibethinus HOM05D005404 ORTHO05D006623 6.7e-45 185.3 121 86.0
Carub.0001s2809 Capsella rubella HOM05D005404 ORTHO05D006623 1.1e-44 184.5 120 88.3
CANSAT35G0205 Cannabis sativa HOM05D005404 ORTHO05D006623 1.5e-44 184.1 121 86.8
Duzib160G0646 Durio zibethinus HOM05D005404 ORTHO05D006623 1.5e-44 184.1 121 84.3
PSO170G1289 Papaver somniferum HOM05D005404 ORTHO05D006623 1.5e-44 184.1 121 86.0
Aqoxy4G00127 Aquilegia oxysepala HOM05D005404 ORTHO05D006623 1.9e-44 183.7 120 85.8
MD16G1202800 Malus domestica HOM05D005404 ORTHO05D006623 1.6e-43 180.6 122 83.6
Ca_18287_v3 Cicer arietinum L. HOM05D005404 ORTHO05D006623 2.1e-43 180.3 121 82.6
Duzib235G1537 Durio zibethinus HOM05D005404 ORTHO05D006623 2.1e-43 180.3 121 83.5
Hund21493 Selenicereus undatus HOM05D005404 ORTHO05D006623 2.1e-43 180.3 121 84.3
THA.LOC104812663 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 2.1e-43 180.3 165 66.1
Gohir.A10G038300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 2.8e-43 179.9 121 83.5
Prupe.4G075200 Prunus persica HOM05D005404 ORTHO05D006623 2.8e-43 179.9 121 83.5
MD05G1290500 Malus domestica HOM05D005404 ORTHO05D006623 3.7e-43 179.5 122 82.8
Medtr4g094580 Medicago truncatula HOM05D005404 ORTHO05D006623 4.8e-43 179.1 120 83.3
Gohir.D10G039300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 8.1e-43 178.3 121 82.6
Gorai.011G041300 Gossypium raimondii HOM05D005404 ORTHO05D006623 8.1e-43 178.3 121 82.6
PGR042G3093 Punica granatum HOM05D005404 ORTHO05D006623 8.1e-43 178.3 121 82.6
TAR626G1892 Trochodendron aralioides HOM05D005404 ORTHO05D006623 8.1e-43 178.3 120 83.3
ATR0681G149 Amborella trichopoda HOM05D005404 ORTHO05D006623 2.4e-42 176.8 117 87.2
arahy.Tifrunner.gnm1.ann1.HITJ74 Arachis hypogaea HOM05D005404 ORTHO05D006623 2.4e-42 176.8 121 81.0
EL10Ac8g19776 Beta vulgaris HOM05D005404 ORTHO05D006623 2.4e-42 176.8 200 56.5
HanXRQChr11g0340931 Helianthus annuus HOM05D005404 ORTHO05D006623 2.4e-42 176.8 121 82.6
TAR627G1065 Trochodendron aralioides HOM05D005404 ORTHO05D006623 2.4e-42 176.8 120 85.0
VMungo0251G2631 Vigna mungo HOM05D005404 ORTHO05D006623 4.0e-42 176.0 121 81.0
FAN21G0592 Fragaria x ananassa HOM05D005404 ORTHO05D006623 5.3e-42 175.6 121 80.2
Glyma.08G082100 Glycine max HOM05D005404 ORTHO05D006623 9.0e-42 174.9 121 81.0
Lj4g0012372 Lotus japonicus HOM05D005404 ORTHO05D006623 1.5e-41 174.1 121 81.8
DCAR_007905 Daucus carota HOM05D005404 ORTHO05D006623 2.0e-41 173.7 120 82.5
Eucgr.E02375 Eucalyptus grandis HOM05D005404 ORTHO05D006623 2.0e-41 173.7 121 81.0
Phvul.002G197500 Phaseolus vulgaris HOM05D005404 ORTHO05D006623 2.0e-41 173.7 121 81.0
Potri.001G352600 Populus trichocarpa HOM05D005404 ORTHO05D006623 4.5e-41 172.6 121 81.0
Sed0003587 Sechium edule HOM05D005404 ORTHO05D006623 4.5e-41 172.6 121 81.0
Ciclev10017167m.g Citrus clementina HOM05D005404 ORTHO05D006623 7.6e-41 171.8 121 80.2
Glyma.05G127400 Glycine max HOM05D005404 ORTHO05D006623 1.3e-40 171.0 121 80.2
MELO3C007159.2 Cucumis melo HOM05D005404 ORTHO05D006623 1.7e-40 170.6 119 81.5
CsaV3_6G051470 Cucumis sativus L. HOM05D005404 ORTHO05D006623 1.7e-40 170.6 119 81.5
CiPaw.09G128300 Carya illinoinensis HOM05D005404 ORTHO05D006623 4.9e-40 169.1 120 81.7
TWI53G0717 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 4.9e-40 169.1 121 80.2
Peaxi162Scf00482g00049 Petunia axillaris HOM05D005404 ORTHO05D006623 3.2e-39 166.4 121 76.9
Solyc02g071150.3 Solanum lycopersicum HOM05D005404 ORTHO05D006623 5.5e-39 165.6 121 76.9
Sopen02g020230 Solanum pennellii HOM05D005404 ORTHO05D006623 5.5e-39 165.6 121 76.9
SGA_v2.0_scaffold333G49013 Striga asiatica HOM05D005404 ORTHO05D006623 7.1e-39 165.2 120 76.7
unitig_26.g10094 Utricularia gibba HOM05D005404 ORTHO05D006623 9.3e-39 164.9 121 75.2
Nitab4.5_0000206g0130 Nicotiana tabacum HOM05D005404 ORTHO05D006623 1.2e-38 164.5 122 77.0
Sc05g0006520 Simmondsia chinensis HOM05D005404 ORTHO05D006623 1.6e-38 164.1 121 76.0
Nn4g26481 Nelumbo nucifera HOM05D005404 ORTHO05D006623 2.7e-38 163.3 142 69.7
Os05g0547850 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 2.7e-38 163.3 121 76.9
AL1G43680 Arabidopsis lyrata HOM05D005404 ORTHO05D006623 4.6e-38 162.5 166 65.1
Migut.H01386 Erythranthe guttata HOM05D005404 ORTHO05D006623 7.9e-38 161.8 121 74.4
Lalb_Chr12g0208831 Lupinus albus HOM05D005404 ORTHO05D006623 7.9e-38 161.8 121 76.9
COL.COLO4_07492 Corchorus olitorius HOM05D005404 ORTHO05D006623 2.3e-37 160.2 108 85.2
MSTRG.16208 Avicennia marina HOM05D005404 ORTHO05D006623 3.0e-37 159.8 120 73.3
GSVIVG01021395001 Vitis vinifera HOM05D005404 ORTHO05D006623 6.7e-37 158.7 108 83.3
Atru.chr10.1368 Acer truncatum HOM05D005404 ORTHO05D006623 8.7e-37 158.3 121 76.9
Aa31LG6G5780 Aethionema arabicum HOM05D005404 ORTHO05D006623 2.5e-36 156.8 110 81.8
Nn3g20867 Nelumbo nucifera HOM05D005404 ORTHO05D006623 3.3e-36 156.4 122 77.0
Psat7g091480 Pisum sativum HOM05D005404 ORTHO05D006623 4.3e-36 156.0 108 81.5
FAN11G2394 Fragaria x ananassa HOM05D005404 ORTHO05D006623 5.7e-36 155.6 108 80.6
Sabra16G0231900 Salix brachista HOM05D005404 ORTHO05D006623 9.6e-36 154.8 157 62.4
DCAR_003948 Daucus carota HOM05D005404 ORTHO05D006623 2.1e-35 153.7 108 82.4
Actinidia39556 Actinidia chinensis HOM05D005404 ORTHO05D006623 3.7e-35 152.9 121 75.2
THA.LOC104814282 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 3.7e-35 152.9 165 60.6
Rhsim02G0154900 Rhododendron simsii HOM05D005404 ORTHO05D006623 4.8e-35 152.5 108 80.6
AT1G29850 Arabidopsis thaliana HOM05D005404 ORTHO05D006623 8.2e-35 151.8 165 61.2
Cc00_g15980 Coffea canephora HOM05D005404 ORTHO05D006623 8.2e-35 151.8 108 79.6
C07p15720 Brassica napus HOM05D005404 ORTHO05D006623 1.1e-34 151.4 86 96.5
Lsat_1_v5_gn_1_91580 Lactuca sativa HOM05D005404 ORTHO05D006623 1.1e-34 151.4 121 75.2
MBI07_g07833_MAGBIO Magnolia biondii HOM05D005404 ORTHO05D006623 1.8e-34 150.6 108 80.6
SalBow7G3345 Salvia bowleyana HOM05D005404 ORTHO05D006623 2.4e-34 150.2 123 70.7
Manes.15G118100 Manihot esculenta HOM05D005404 ORTHO05D006623 4.1e-34 149.4 119 74.8
Manes.17G066000 Manihot esculenta HOM05D005404 ORTHO05D006623 9.0e-34 148.3 121 72.7
QL05p060078 Quercus lobata HOM05D005404 ORTHO05D006623 9.0e-34 148.3 121 71.9
Haze_05531 Corylus avellana HOM05D005404 ORTHO05D006623 4.5e-33 146.0 108 76.9
CDE08G1548 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 1.7e-32 144.1 95 84.2
CDE02G1967 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 2.2e-32 143.7 119 73.1
FAN25G0636 Fragaria x ananassa HOM05D005404 ORTHO05D006623 3.8e-32 142.9 124 69.4
Zm00001eb294640 Zea mays HOM05D005404 ORTHO05D006623 6.5e-32 142.1 121 71.1
FAN25G2540 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.1e-31 141.4 120 71.7
RcHm_v2.0_Chr5g0013081 Rosa chinensis HOM05D005404 ORTHO05D006623 1.1e-31 141.4 121 70.2
ECA248G0679 Erigeron canadensis HOM05D005404 ORTHO05D006623 2.5e-31 140.2 121 71.9
Hma1.2p1_0015F.1_g010240 Hydrangea macrophylla HOM05D005404 ORTHO05D006623 2.5e-31 140.2 144 62.5
Dinv32291 Davidia involucrata HOM05D005404 ORTHO05D006623 7.2e-31 138.7 108 75.9
Oeu012458.1 Olea europaea HOM05D005404 ORTHO05D006623 7.9e-30 135.2 120 68.3
TWI09G1218 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 5.1e-29 132.5 104 76.9
FAN16G2304 Fragaria x ananassa HOM05D005404 ORTHO05D006623 6.7e-29 132.1 121 67.8
Lj2A310T44 Lonicera japonica HOM05D005404 ORTHO05D006623 3.3e-28 129.8 108 73.1
AUR62027578 Chenopodium quinoa HOM05D005404 ORTHO05D006623 4.3e-28 129.4 121 66.1
TAR636G3446 Trochodendron aralioides HOM05D005404 ORTHO05D006623 3.7e-27 126.3 82 87.8
AUR62035781 Chenopodium quinoa HOM05D005404 ORTHO05D006623 6.3e-27 125.6 121 64.5
Oeu052389.2 Olea europaea HOM05D005404 ORTHO05D006623 2.4e-26 123.6 133 59.4
Nitab4.5_0008782g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 4.1e-26 122.9 120 65.0
MSTRG.14760 Avicennia marina HOM05D005404 ORTHO05D006623 5.3e-26 122.5 95 71.6
CAN.G257.34 Capsicum annuum HOM05D005404 ORTHO05D006623 6.9e-26 122.1 120 62.5
AUR62023445 Chenopodium quinoa HOM05D005404 ORTHO05D006623 2.0e-25 120.6 84 78.6
FvH4_3g06230 Fragaria vesca HOM05D005404 ORTHO05D006623 2.0e-25 120.6 108 68.5
Peaxi162Scf00121g02445 Petunia axillaris HOM05D005404 ORTHO05D006623 1.3e-24 117.9 117 63.2
Oeu046548.1 Olea europaea HOM05D005404 ORTHO05D006623 1.4e-23 114.4 108 64.8
PGSC0003DMG400003081 Solanum tuberosum HOM05D005404 ORTHO05D006623 1.9e-23 114.0 121 61.2
Zm00001eb342640 Zea mays HOM05D005404 ORTHO05D006623 2.5e-23 113.6 121 61.2
A09p36640 Brassica napus HOM05D005404 ORTHO05D006623 3.2e-23 113.2 64 95.3
ClCG01G024320 Citrullus lanatus HOM05D005404 ORTHO05D006623 6.1e-22 109.0 80 76.2
MD09G1183100 Malus domestica HOM05D005404 ORTHO05D006623 1.4e-21 107.8 70 85.7
Pp3c14_19320 Physcomitrium patens HOM05D005404 ORTHO05D006623 2.3e-21 107.1 122 58.2
AagrBONN_evm.TU.Sc2ySwM_362.2923 Anthoceros agrestis HOM05D005404 ORTHO05D006623 3.3e-20 103.2 71 76.1
SMO358G0232 Selaginella moellendorffii HOM05D005404 ORTHO05D006623 4.8e-19 99.4 119 54.6
C03p76250 Brassica napus HOM05D005404 ORTHO05D006623 2.0e-17 94.0 54 98.1
arahy.Tifrunner.gnm1.ann1.JSLQ1D Arachis hypogaea HOM05D005404 ORTHO05D006623 4.5e-17 92.8 57 86.0
Cpa.g.sc17.100 Carica papaya HOM05D005404 ORTHO05D006623 1.0e-16 91.7 55 89.1
Cre12.g557800 Chlamydomonas reinhardtii HOM05D005404 ORTHO05D006623 2.2e-16 90.5 115 47.8
Mapoly0080s0013 Marchantia polymorpha HOM05D005404 ORTHO05D006623 2.2e-16 90.5 123 52.8
arahy.Tifrunner.gnm1.ann1.HCY9BB Arachis hypogaea HOM05D005404 ORTHO05D006623 1.1e-15 88.2 63 77.8
Nitab4.5_0003527g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 2.5e-15 87.0 55 85.5
Os05g0546500 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 9.4e-15 85.1 59 78.0
HPP92_021556 Vanilla planifolia HOM05D000864 ORTHO05D001658 2.1e-14 84.0 119 51.3
CBR_g45965 Chara braunii HOM05D005404 ORTHO05D006623 3.6e-14 83.2 74 59.5
SEGI_04398 Sequoiadendron giganteum HOM05D005404 ORTHO05D006623 1.0e-13 81.6 57 77.2
PRCOL_00005423 Prasinoderma coloniale HOM05D005404 ORTHO05D006623 2.8e-11 73.6 79 50.6
Nitab4.5_0010964g0060 Nicotiana tabacum HOM05D000728 ORTHO05D001474 6.3e-11 72.4 262 30.9
CSS0048314 Camellia sinensis var. sinensis HOM05D005404 ORTHO05D006623 7.0e-10 68.9 64 64.1
Gohir.A08G088100 Gossypium hirsutum HOM05D005404 ORTHO05D006623 2.6e-09 67.0 51 76.5
HPP92_021557 Vanilla planifolia HOM05D005404 ORTHO05D006623 2.2e-08 63.9 43 79.1


User provided reference genes

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