Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p07510 Brassica napus HOM05D007853 ORTHO05D009873 8.4e-221 770.0 377 100.0
BraA07t28542Z Brassica rapa HOM05D007853 ORTHO05D009873 8.4e-221 770.0 377 100.0
BcaC06g35750 Brassica carinata HOM05D007853 ORTHO05D009873 9.6e-209 729.9 377 93.9
BolC7t41605H Brassica oleracea HOM05D007853 ORTHO05D009873 9.6e-209 729.9 377 93.9
C07p11280 Brassica napus HOM05D007853 ORTHO05D009873 2.2e-205 718.8 372 93.8
BcaB06g26693 Brassica carinata HOM05D007853 ORTHO05D009873 4.2e-196 688.0 378 87.6
Sp3g22500 Schrenkiella parvula HOM05D007853 ORTHO05D009873 4.0e-178 628.2 380 80.3
Thhalv10002571m.g Eutrema salsugineum HOM05D007853 ORTHO05D009873 3.5e-174 615.1 380 80.0
Aa31LG8G11920 Aethionema arabicum HOM05D007853 ORTHO05D009873 3.6e-155 552.0 385 72.7
AL3G40490 Arabidopsis lyrata HOM05D007853 ORTHO05D009873 8.9e-154 547.4 389 73.5
AT3G24760 Arabidopsis thaliana HOM05D007853 ORTHO05D009873 3.7e-152 542.0 385 74.0
Carub.0003s2515 Capsella rubella HOM05D007853 ORTHO05D009873 1.1e-151 540.4 388 73.7
THA.LOC104804604 Tarenaya hassleriana HOM05D007853 ORTHO05D009873 1.6e-150 536.6 380 72.1
CARHR101120 Cardamine hirsuta HOM05D007853 ORTHO05D009873 6.6e-149 531.2 385 69.6
Thecc.01G228200 Theobroma cacao HOM05D007853 ORTHO05D009873 2.1e-123 446.4 380 57.6
Duzib133G0551 Durio zibethinus HOM05D007853 ORTHO05D009873 9.9e-121 437.6 380 57.6
Manes.12G041900 Manihot esculenta HOM05D007853 ORTHO05D009873 3.8e-120 435.6 376 58.5
Prupe.8G204900 Prunus persica HOM05D007853 ORTHO05D009873 2.1e-118 429.9 368 58.7
Gohir.D11G142600 Gossypium hirsutum HOM05D007853 ORTHO05D009873 7.8e-118 427.9 377 56.5
Gorai.007G152900 Gossypium raimondii HOM05D007853 ORTHO05D009873 7.8e-118 427.9 377 56.5
Gohir.A11G136300 Gossypium hirsutum HOM05D007853 ORTHO05D009873 2.3e-117 426.4 378 56.6
CiPaw.04G106700 Carya illinoinensis HOM05D007853 ORTHO05D009873 7.3e-116 421.4 382 54.7
FAN24G3434 Fragaria x ananassa HOM05D007853 ORTHO05D009873 9.6e-116 421.0 382 55.5
FvH4_2g19330 Fragaria vesca HOM05D007853 ORTHO05D009873 1.3e-115 420.6 384 55.5
RcHm_v2.0_Chr6g0285141 Rosa chinensis HOM05D007853 ORTHO05D009873 4.8e-115 418.7 375 56.8
FAN15G1839 Fragaria x ananassa HOM05D007853 ORTHO05D009873 1.4e-114 417.2 382 55.0
FAN27G0897 Fragaria x ananassa HOM05D007853 ORTHO05D009873 5.3e-114 415.2 384 55.2
MD05G1178400 Malus domestica HOM05D007853 ORTHO05D009873 9.3e-111 404.4 383 55.1
PGR044G1509 Punica granatum HOM05D007853 ORTHO05D009873 2.7e-110 402.9 391 53.5
Ciclev10020523m.g Citrus clementina HOM05D007853 ORTHO05D009873 7.9e-110 401.4 395 53.9
CiPaw.03G151300 Carya illinoinensis HOM05D007853 ORTHO05D009873 1.0e-109 401.0 385 53.8
QL09p044713 Quercus lobata HOM05D007853 ORTHO05D009873 6.6e-109 398.3 386 52.3
TWI18G0437 Tripterygium wilfordii HOM05D007853 ORTHO05D009873 4.3e-108 395.6 364 55.8
Cfa002555 Carpinus fangiana HOM05D007853 ORTHO05D009873 7.4e-108 394.8 373 54.2
vmacro14766 Vaccinium macrocarpon HOM05D007853 ORTHO05D009873 8.1e-107 391.3 387 52.7
Dinv04666 Davidia involucrata HOM05D007853 ORTHO05D009873 1.4e-106 390.6 385 51.2
Lj1g0009384 Lotus japonicus HOM05D007853 ORTHO05D009873 5.3e-106 388.7 386 51.6
Lalb_Chr03g0041891 Lupinus albus HOM05D007853 ORTHO05D009873 5.3e-106 388.7 372 53.0
ClCG09G009130 Citrullus lanatus HOM05D007853 ORTHO05D009873 2.0e-105 386.7 374 54.5
TAR636G2687 Trochodendron aralioides HOM05D007853 ORTHO05D009873 3.4e-105 386.0 379 51.5
MBI10_g16828_MAGBIO Magnolia biondii HOM05D007853 ORTHO05D009873 4.9e-104 382.1 384 50.8
CSS0040524 Camellia sinensis var. sinensis HOM05D007853 ORTHO05D009873 5.5e-103 378.6 380 50.3
Actinidia09494 Actinidia chinensis HOM05D007853 ORTHO05D009873 2.1e-102 376.7 397 48.9
Phvul.008G123400 Phaseolus vulgaris HOM05D007853 ORTHO05D009873 2.1e-102 376.7 381 51.2
Ca_07539_v3 Cicer arietinum L. HOM05D007853 ORTHO05D009873 3.0e-101 372.9 372 53.2
Hma1.2p1_1061F.1_g253350 Hydrangea macrophylla HOM05D007853 ORTHO05D009873 3.9e-101 372.5 391 50.1
Medtr0197s0070 Medicago truncatula HOM05D007853 ORTHO05D009873 3.9e-101 372.5 369 52.6
Medtr7g059040 Medicago truncatula HOM05D007853 ORTHO05D009873 3.9e-101 372.5 369 52.6
Psat3g143800 Pisum sativum HOM05D007853 ORTHO05D009873 6.7e-101 371.7 371 52.6
Glyma.18G173200 Glycine max HOM05D007853 ORTHO05D009873 1.5e-100 370.5 375 51.5
VMungo1383G0232 Vigna mungo HOM05D007853 ORTHO05D009873 2.5e-100 369.8 371 51.5
Lsat_1_v5_gn_5_179800 Lactuca sativa HOM05D007853 ORTHO05D009873 4.3e-100 369.0 386 48.7
Lj1C83T5 Lonicera japonica HOM05D007853 ORTHO05D009873 7.4e-100 368.2 380 49.5
CDE01G0405 Ceratophyllum demersum HOM05D007853 ORTHO05D009873 2.8e-99 366.3 375 49.1
TPR.G15291 Trifolium pratense HOM05D007853 ORTHO05D009873 2.8e-99 366.3 366 52.2
CAN.G771.60 Capsicum annuum HOM05D007853 ORTHO05D009873 4.0e-98 362.5 367 50.4
Glyma.08G356100 Glycine max HOM05D007853 ORTHO05D009873 4.0e-98 362.5 374 50.8
HanXRQChr01g0014671 Helianthus annuus HOM05D007853 ORTHO05D009873 1.0e-96 357.8 404 46.5
Sopen06g034930 Solanum pennellii HOM05D007853 ORTHO05D009873 1.4e-95 354.0 367 49.3
Solyc06g083550.1 Solanum lycopersicum HOM05D007853 ORTHO05D009873 4.2e-95 352.4 367 49.6
PGSC0003DMG400020089 Solanum tuberosum HOM05D007853 ORTHO05D009873 2.7e-94 349.7 368 49.2
ATR0787G102 Amborella trichopoda HOM05D007853 ORTHO05D009873 4.1e-90 335.9 379 46.2
Actinidia23732 Actinidia chinensis HOM05D007853 ORTHO05D009873 6.9e-90 335.1 362 50.3
Oeu015462.1 Olea europaea HOM05D007853 ORTHO05D009873 6.5e-88 328.6 371 48.2
DCAR_000536 Daucus carota HOM05D007853 ORTHO05D009873 7.9e-86 321.6 369 47.4
SEGI_02257 Sequoiadendron giganteum HOM05D007853 ORTHO05D009873 1.8e-85 320.5 374 43.6
GSVIVG01028563001 Vitis vinifera HOM05D007853 ORTHO05D009873 2.3e-85 320.1 355 51.8
Haze_24777 Corylus avellana HOM05D007853 ORTHO05D009873 6.9e-74 282.0 279 52.3
Peaxi162Scf00517g00042 Petunia axillaris HOM05D007853 ORTHO05D009873 6.7e-69 265.4 242 52.5
Nn3g19919 Nelumbo nucifera HOM05D007853 ORTHO05D009873 8.5e-56 221.9 318 43.1
Nitab4.5_0006773g0030 Nicotiana tabacum HOM05D007853 ORTHO05D009873 7.7e-49 198.7 267 38.6
Mapoly0119s0024 Marchantia polymorpha HOM05D007853 ORTHO05D009873 1.2e-46 191.4 380 33.4
Atru.chr5.2009 Acer truncatum HOM05D007853 ORTHO05D009873 3.3e-39 166.8 131 54.2
Mapoly0119s0021 Marchantia polymorpha HOM05D007853 ORTHO05D009873 9.5e-39 165.2 385 30.1
Pp3c2_14180 Physcomitrium patens HOM05D007853 ORTHO05D009873 3.4e-28 130.2 388 27.1
AUR62014077 Chenopodium quinoa HOM05D004907 ORTHO05D005707 1.7e-27 127.9 366 27.9
CiPaw.05G186900 Carya illinoinensis HOM05D004907 ORTHO05D005707 5.4e-26 122.9 364 26.6
Lsat_1_v5_gn_8_154601 Lactuca sativa HOM05D004907 ORTHO05D005707 5.4e-26 122.9 373 27.3
AUR62005416 Chenopodium quinoa HOM05D004907 ORTHO05D005707 7.0e-26 122.5 363 27.8
Carub.0001s2297 Capsella rubella HOM05D004907 ORTHO05D005707 9.2e-26 122.1 382 30.1
Oeu001729.1 Olea europaea HOM05D004907 ORTHO05D005707 9.2e-26 122.1 366 27.0
Lalb_Chr00c01g0403781 Lupinus albus HOM05D007853 ORTHO05D009873 1.7e-24 117.9 121 52.1
Nn4g22709 Nelumbo nucifera HOM05D004907 ORTHO05D005707 2.3e-24 117.5 378 27.2
Aqoxy3G02876 Aquilegia oxysepala HOM05D004907 ORTHO05D005707 5.0e-24 116.3 374 25.1
AT1G23390 Arabidopsis thaliana HOM05D004907 ORTHO05D005707 6.6e-24 115.9 379 28.5
MSTRG.2405 Avicennia marina HOM05D004907 ORTHO05D005707 6.6e-24 115.9 358 27.4
ATR1091G111 Amborella trichopoda HOM05D004907 ORTHO05D005707 2.5e-23 114.0 375 26.4
HanXRQChr06g0173591 Helianthus annuus HOM05D004907 ORTHO05D005707 1.2e-22 111.7 373 25.5
Thhalv10007835m.g Eutrema salsugineum HOM05D004907 ORTHO05D005707 1.6e-22 111.3 383 27.7
Gohir.D02G160600 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.6e-22 111.3 341 29.6
Rhsim12G0113900 Rhododendron simsii HOM05D004907 ORTHO05D005707 2.1e-22 110.9 340 27.9
Migut.L01466 Erythranthe guttata HOM05D004907 ORTHO05D005707 2.8e-22 110.5 361 28.3
MD16G1096500 Malus domestica HOM05D004907 ORTHO05D005707 2.8e-22 110.5 370 28.9
CARHR023830 Cardamine hirsuta HOM05D004907 ORTHO05D005707 4.7e-22 109.8 380 28.7
Phvul.003G062300 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 8.1e-22 109.0 358 27.4
CDE06G1150 Ceratophyllum demersum HOM05D004907 ORTHO05D005707 1.1e-21 108.6 310 26.8
PSO144G0054 Papaver somniferum HOM05D004907 ORTHO05D005707 1.1e-21 108.6 352 26.1
Pp3c10_6380 Physcomitrium patens HOM05D007853 ORTHO05D009873 1.1e-21 108.6 388 25.3
Rhsim12G0042700 Rhododendron simsii HOM05D004907 ORTHO05D005707 1.1e-21 108.6 370 28.9
Manes.13G027600 Manihot esculenta HOM05D004907 ORTHO05D005707 1.4e-21 108.2 348 26.1
CSS0001528 Camellia sinensis var. sinensis HOM05D004907 ORTHO05D005707 1.8e-21 107.8 363 27.3
CAN.G728.4 Capsicum annuum HOM05D004907 ORTHO05D005707 1.8e-21 107.8 359 25.3
Psat2g106360 Pisum sativum HOM05D004907 ORTHO05D005707 1.8e-21 107.8 359 27.3
Nitab4.5_0000338g0040 Nicotiana tabacum HOM05D004907 ORTHO05D005707 3.1e-21 107.1 365 26.0
Gohir.D01G149900 Gossypium hirsutum HOM05D004907 ORTHO05D005707 4.0e-21 106.7 372 25.8
PSO782G1891 Papaver somniferum HOM05D004907 ORTHO05D005707 5.2e-21 106.3 348 25.9
Sopen05g001160 Solanum pennellii HOM05D004907 ORTHO05D005707 5.2e-21 106.3 362 24.6
BolC5t30967H Brassica oleracea HOM05D004907 ORTHO05D005707 8.9e-21 105.5 380 27.6
CANSAT01G1025 Cannabis sativa HOM05D004907 ORTHO05D005707 8.9e-21 105.5 378 23.8
Gorai.002G186000 Gossypium raimondii HOM05D004907 ORTHO05D005707 8.9e-21 105.5 372 25.3
SEGI_08843 Sequoiadendron giganteum HOM05D007853 ORTHO05D009873 8.9e-21 105.5 392 26.5
PGR102G3060 Punica granatum HOM05D004907 ORTHO05D005707 1.2e-20 105.1 345 28.7
DCAR_007072 Daucus carota HOM05D004907 ORTHO05D005707 1.5e-20 104.8 361 24.9
PGSC0003DMG400013488 Solanum tuberosum HOM05D004907 ORTHO05D005707 1.5e-20 104.8 361 24.9
PSO170G6868 Papaver somniferum HOM05D004907 ORTHO05D005707 2.6e-20 104.0 346 25.4
PSO441G0001 Papaver somniferum HOM05D004907 ORTHO05D005707 2.6e-20 104.0 346 25.4
Solyc05g005150.1 Solanum lycopersicum HOM05D004907 ORTHO05D005707 2.6e-20 104.0 361 24.7
C05p22690 Brassica napus HOM05D004907 ORTHO05D005707 4.4e-20 103.2 380 27.4
BcaC05g26256 Brassica carinata HOM05D004907 ORTHO05D005707 5.8e-20 102.8 372 27.4
Nitab4.5_0015209g0010 Nicotiana tabacum HOM05D004907 ORTHO05D005707 5.8e-20 102.8 365 26.6
Oeu055460.1 Olea europaea HOM05D004907 ORTHO05D005707 5.8e-20 102.8 363 25.3
Atru.chr11.2072 Acer truncatum HOM05D004907 ORTHO05D005707 7.5e-20 102.4 350 28.6
Psat5g210760 Pisum sativum HOM05D004907 ORTHO05D005707 7.5e-20 102.4 338 25.1
QL03p059196 Quercus lobata HOM05D004907 ORTHO05D005707 7.5e-20 102.4 341 26.7
RcHm_v2.0_Chr4g0441991 Rosa chinensis HOM05D004907 ORTHO05D005707 9.8e-20 102.1 377 26.3
Prupe.1G249900 Prunus persica HOM05D004907 ORTHO05D005707 8.3e-19 99.0 362 26.0
AL1G37180 Arabidopsis lyrata HOM05D004907 ORTHO05D005707 1.1e-18 98.6 380 26.6
Lj4g0000696 Lotus japonicus HOM05D004907 ORTHO05D005707 1.1e-18 98.6 358 26.8
FAN12G3344 Fragaria x ananassa HOM05D004907 ORTHO05D005707 2.4e-18 97.4 347 27.4
Gohir.A03G137500 Gossypium hirsutum HOM05D004907 ORTHO05D005707 2.4e-18 97.4 365 26.6
THA.LOC104822976 Tarenaya hassleriana HOM05D004907 ORTHO05D005707 5.4e-18 96.3 365 26.0
FAN22G1867 Fragaria x ananassa HOM05D004907 ORTHO05D005707 7.1e-18 95.9 342 28.1
VMungo1215G1811 Vigna mungo HOM05D004907 ORTHO05D005707 9.2e-18 95.5 351 27.1
FAN07G1203 Fragaria x ananassa HOM05D004907 ORTHO05D005707 1.2e-17 95.1 338 26.6
PGR119G0630 Punica granatum HOM05D004907 ORTHO05D005707 1.2e-17 95.1 364 23.1
FAN17G0584 Fragaria x ananassa HOM05D004907 ORTHO05D005707 1.6e-17 94.7 339 28.3
Eucgr.H02549 Eucalyptus grandis HOM05D004907 ORTHO05D005707 2.7e-17 94.0 381 26.0
SalBow2G1155 Salvia bowleyana HOM05D004907 ORTHO05D005707 2.7e-17 94.0 370 26.8
SMO116G0409 Selaginella moellendorffii HOM05D002809 ORTHO05D004563 4.6e-17 93.2 343 23.3
Gohir.A01G160100 Gossypium hirsutum HOM05D004907 ORTHO05D005707 7.8e-17 92.4 317 25.6
Hma1.2p1_0160F.1_g071120 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 7.8e-17 92.4 362 24.3
Glyma.02G036400 Glycine max HOM05D004907 ORTHO05D005707 3.0e-16 90.5 337 25.5
Eucgr.H02548 Eucalyptus grandis HOM05D004907 ORTHO05D005707 3.9e-16 90.1 380 25.3
Oeu056417.1 Olea europaea HOM05D004907 ORTHO05D005707 3.9e-16 90.1 358 25.1
Medtr5g043750 Medicago truncatula HOM05D004907 ORTHO05D005707 1.9e-15 87.8 361 24.9
Medtr8g069800 Medicago truncatula HOM05D004907 ORTHO05D005707 3.3e-15 87.0 342 24.3
Gorai.005G180700 Gossypium raimondii HOM05D004907 ORTHO05D005707 4.3e-15 86.7 340 25.9
Sed0025966 Sechium edule HOM05D002061 ORTHO05D005707 9.5e-15 85.5 365 25.8
Dinv40740 Davidia involucrata HOM05D003931 ORTHO05D004577 3.6e-14 83.6 71 50.7
Sed0027759 Sechium edule HOM05D004907 ORTHO05D005707 3.6e-14 83.6 385 24.7
TWI36G0219 Tripterygium wilfordii HOM05D004907 ORTHO05D005707 3.6e-14 83.6 371 24.8
Lj2g0022644 Lotus japonicus HOM05D004907 ORTHO05D005707 4.7e-14 83.2 344 24.7
EL10Ac6g13709 Beta vulgaris HOM05D004907 ORTHO05D005707 6.2e-14 82.8 187 27.8
Rhsim01G0257600 Rhododendron simsii HOM05D007853 ORTHO05D009873 6.8e-13 79.3 91 48.4
Mapoly0137s0025 Marchantia polymorpha HOM05D004302 ORTHO05D004939 2.6e-12 77.4 319 26.0
SMO367G1056 Selaginella moellendorffii HOM05D002809 ORTHO05D030467 2.6e-12 77.4 359 23.1
Pp3c10_6350 Physcomitrium patens HOM05D007853 ORTHO05D009873 4.4e-12 76.6 243 28.0
Mapoly0125s0029 Marchantia polymorpha HOM05D002809 ORTHO05D009091 7.6e-12 75.9 323 25.7
AagrBONN_evm.TU.Sc2ySwM_228.2355 Anthoceros agrestis HOM05D002809 ORTHO05D007546 2.9e-11 73.9 300 25.0
Mapoly0098s0011 Marchantia polymorpha HOM05D007853 ORTHO05D009873 4.9e-11 73.2 317 27.8
Mapoly0168s0028 Marchantia polymorpha HOM05D003005 ORTHO05D007546 6.4e-11 72.8 300 24.3
ClCG08G017860 Citrullus lanatus HOM05D002061 ORTHO05D005707 1.9e-10 71.2 208 27.4
Ca_06955_v3 Cicer arietinum L. HOM05D004302 ORTHO05D004939 4.1e-10 70.1 328 25.9
Mapoly0115s0063 Marchantia polymorpha HOM05D007853 ORTHO05D009873 1.2e-09 68.6 293 25.9
AagrBONN_evm.TU.Sc2ySwM_117.2091 Anthoceros agrestis HOM05D003005 ORTHO05D004939 3.5e-09 67.0 379 21.1
CSS0006122 Camellia sinensis var. sinensis HOM05D004302 ORTHO05D004939 1.0e-08 65.5 324 24.4
HanXRQChr07g0200041 Helianthus annuus HOM05D004302 ORTHO05D004939 1.7e-08 64.7 320 23.4
Pp3c10_20160 Physcomitrium patens HOM05D003005 ORTHO05D004563 1.7e-08 64.7 317 22.4
HanXRQChr05g0128691 Helianthus annuus HOM05D002809 ORTHO05D004563 3.0e-08 63.9 315 19.7
Mapoly0170s0023 Marchantia polymorpha HOM05D002809 ORTHO05D004563 8.6e-08 62.4 343 25.7
Thhalv10016113m.g Eutrema salsugineum HOM05D007853 ORTHO05D009873 1.1e-07 62.0 37 89.2
AagrBONN_evm.TU.Sc2ySwM_344.2438 Anthoceros agrestis HOM05D002809 ORTHO05D004939 5.6e-07 59.7 301 23.6
Lsat_1_v5_gn_3_30801 Lactuca sativa HOM05D002809 ORTHO05D004563 1.2e-06 58.5 313 21.4
SEGI_02380 Sequoiadendron giganteum HOM05D007853 ORTHO05D009873 2.1e-06 57.8 42 61.9
Cc08_g07830 Coffea canephora HOM05D006415 ORTHO05D008549 4.7e-06 56.6 205 28.3
SEGI_36099 Sequoiadendron giganteum HOM05D003005 ORTHO05D030467 4.7e-06 56.6 372 22.8


User provided reference genes

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