Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p06030 Brassica napus HOM05D003415 ORTHO05D001594 2.7e-66 255.4 147 100.0
C09p04920 Brassica napus HOM05D003415 ORTHO05D001594 4.1e-38 161.8 106 78.3
BolC9t53420H Brassica oleracea HOM05D003415 ORTHO05D001594 4.1e-38 161.8 106 78.3
Sp2g19130 Schrenkiella parvula HOM05D003415 ORTHO05D001594 7.0e-38 161.0 105 78.1
BraA09t36096Z Brassica rapa HOM05D003415 ORTHO05D001594 1.6e-37 159.8 106 78.3
BcaC04g23764 Brassica carinata HOM05D003415 ORTHO05D001594 3.5e-37 158.7 105 78.1
A09p04600 Brassica napus HOM05D003415 ORTHO05D001594 4.5e-37 158.3 106 77.4
BcaC06g30764 Brassica carinata HOM05D003415 ORTHO05D001594 1.7e-36 156.4 105 77.1
C07p39370 Brassica napus HOM05D003415 ORTHO05D001594 2.2e-36 156.0 105 77.1
BolC7t44457H Brassica oleracea HOM05D003415 ORTHO05D001594 2.2e-36 156.0 105 77.1
A06p38960 Brassica napus HOM05D003415 ORTHO05D001594 3.8e-36 155.2 105 76.2
BraA06t26810Z Brassica rapa HOM05D003415 ORTHO05D001594 3.8e-36 155.2 105 76.2
Thhalv10004684m.g Eutrema salsugineum HOM05D003415 ORTHO05D001594 4.2e-35 151.8 105 76.2
AL8G21800 Arabidopsis lyrata HOM05D003415 ORTHO05D001594 3.0e-33 145.6 105 72.4
AT5G48720 Arabidopsis thaliana HOM05D003415 ORTHO05D001594 6.7e-33 144.4 105 71.4
Carub.0008s0847 Capsella rubella HOM05D003415 ORTHO05D001594 1.3e-31 140.2 105 69.5
CARHR183170 Cardamine hirsuta HOM05D003415 ORTHO05D001594 7.0e-30 134.4 105 66.7
Aa31sc37G20 Aethionema arabicum HOM05D003415 ORTHO05D001594 9.1e-30 134.0 106 67.0
BcaB07g30041 Brassica carinata HOM05D003415 ORTHO05D001594 1.7e-28 129.8 113 66.4
C02p56780 Brassica napus HOM05D003415 ORTHO05D001594 6.5e-28 127.9 107 65.4
THA.LOC104802669 Tarenaya hassleriana HOM05D003415 ORTHO05D001594 1.4e-25 120.2 105 58.1
THA.LOC104818962 Tarenaya hassleriana HOM05D003415 ORTHO05D001594 9.8e-24 114.0 105 56.2
THA.LOC104822499 Tarenaya hassleriana HOM05D003415 ORTHO05D001594 1.1e-22 110.5 108 52.8
Aa31LG10G10800 Aethionema arabicum HOM05D003415 ORTHO05D001594 1.7e-20 103.2 105 53.3
BraA02t08751Z Brassica rapa HOM05D003415 ORTHO05D001594 1.7e-20 103.2 107 57.0
A02p37690 Brassica napus HOM05D003415 ORTHO05D001594 2.5e-19 99.4 107 56.1
BolC2t11746H Brassica oleracea HOM05D003415 ORTHO05D001594 3.3e-19 99.0 93 60.2
Atru.chr9.2214 Acer truncatum HOM05D003415 ORTHO05D001594 3.7e-15 85.5 105 43.8
Atru.chr1.3187 Acer truncatum HOM05D003415 ORTHO05D001594 4.9e-15 85.1 105 42.9
Gohir.A08G195150 Gossypium hirsutum HOM05D003415 ORTHO05D001594 1.1e-14 84.0 104 44.2
Duzib133G1316 Durio zibethinus HOM05D003415 ORTHO05D001594 5.4e-14 81.6 104 43.3
Duzib211G0076 Durio zibethinus HOM05D003415 ORTHO05D001594 5.4e-14 81.6 104 42.3
CiPaw.03G148100 Carya illinoinensis HOM05D003415 ORTHO05D001594 9.2e-14 80.9 93 51.6
Thecc.01G224000 Theobroma cacao HOM05D003415 ORTHO05D001594 2.0e-13 79.7 104 43.3
Ciclev10028898m.g Citrus clementina HOM05D003415 ORTHO05D001594 2.7e-13 79.3 98 45.9
Duzib138G0574 Durio zibethinus HOM05D003415 ORTHO05D001594 2.7e-13 79.3 104 41.3
Gohir.A07G200600 Gossypium hirsutum HOM05D003415 ORTHO05D001594 5.9e-13 78.2 103 40.8
Gohir.D07G206900 Gossypium hirsutum HOM05D003415 ORTHO05D001594 5.9e-13 78.2 103 40.8
Gohir.D08G212628 Gossypium hirsutum HOM05D003415 ORTHO05D001594 5.9e-13 78.2 104 43.3
Gorai.001G233300 Gossypium raimondii HOM05D003415 ORTHO05D001594 5.9e-13 78.2 103 40.8
Gohir.D07G163800 Gossypium hirsutum HOM05D003415 ORTHO05D001594 7.8e-13 77.8 104 41.3
Gorai.001G187500 Gossypium raimondii HOM05D003415 ORTHO05D001594 7.8e-13 77.8 104 41.3
Gorai.004G226300 Gossypium raimondii HOM05D003415 ORTHO05D001594 7.8e-13 77.8 104 43.3
Ciclev10021149m.g Citrus clementina HOM05D003415 ORTHO05D001594 1.0e-12 77.4 107 41.1
Cpa.g.sc8.139 Carica papaya HOM05D003415 ORTHO05D001594 1.7e-12 76.6 100 46.0
MD05G1173900 Malus domestica HOM05D003415 ORTHO05D001594 2.9e-12 75.9 99 40.4
Prupe.8G201300 Prunus persica HOM05D003415 ORTHO05D001594 8.6e-12 74.3 99 41.4
Gohir.A07G157400 Gossypium hirsutum HOM05D003415 ORTHO05D001594 1.5e-11 73.6 104 40.4
Oeu042810.1 Olea europaea HOM05D003415 ORTHO05D001594 1.9e-11 73.2 97 44.3
MD10G1161800 Malus domestica HOM05D003415 ORTHO05D001594 4.3e-11 72.0 99 39.4
PGR083G1672 Punica granatum HOM05D003415 ORTHO05D001594 4.3e-11 72.0 100 40.0
SalBow3G1406 Salvia bowleyana HOM05D003415 ORTHO05D001594 4.3e-11 72.0 106 38.7
Phvul.010G020000 Phaseolus vulgaris HOM05D003415 ORTHO05D001594 5.6e-11 71.6 102 42.2
Glyma.16G094900 Glycine max HOM05D003415 ORTHO05D001594 7.3e-11 71.2 102 41.2
VMungo0331G0848 Vigna mungo HOM05D003415 ORTHO05D001594 7.3e-11 71.2 102 45.1
Manes.12G046200 Manihot esculenta HOM05D003415 ORTHO05D001594 9.5e-11 70.9 103 42.7
Oeu042809.1 Olea europaea HOM05D003415 ORTHO05D001594 9.5e-11 70.9 97 43.3
Nitab4.5_0000085g0290 Nicotiana tabacum HOM05D003415 ORTHO05D001594 1.2e-10 70.5 102 38.2
Nitab4.5_0002406g0020 Nicotiana tabacum HOM05D003415 ORTHO05D001594 1.2e-10 70.5 102 37.3
Oeu058965.1 Olea europaea HOM05D003415 ORTHO05D001594 1.2e-10 70.5 97 44.3
CiPaw.04G104600 Carya illinoinensis HOM05D003415 ORTHO05D001594 1.6e-10 70.1 98 44.9
Hma1.2p1_0226F.1_g095560 Hydrangea macrophylla HOM05D003415 ORTHO05D001594 1.6e-10 70.1 104 41.3
Lalb_Chr12g0209961 Lupinus albus HOM05D003415 ORTHO05D001594 2.1e-10 69.7 102 42.2
Lsat_1_v5_gn_5_180561 Lactuca sativa HOM05D003415 ORTHO05D001594 2.8e-10 69.3 107 41.1
Ca_26921_v3 Cicer arietinum L. HOM05D003415 ORTHO05D001594 4.7e-10 68.6 102 39.2
RcHm_v2.0_Chr6g0284531 Rosa chinensis HOM05D003415 ORTHO05D001594 4.7e-10 68.6 101 39.6
ECA248G2219 Erigeron canadensis HOM05D003415 ORTHO05D001594 6.1e-10 68.2 106 41.5
Nn1g07918 Nelumbo nucifera HOM05D003415 ORTHO05D001594 6.1e-10 68.2 103 37.9
FAN24G0460 Fragaria x ananassa HOM05D003415 ORTHO05D001594 8.0e-10 67.8 99 43.4
MSTRG.24730 Avicennia marina HOM05D003415 ORTHO05D001594 1.0e-09 67.4 105 36.2
CANSAT01G2234 Cannabis sativa HOM05D003415 ORTHO05D001594 1.0e-09 67.4 102 41.2
HanXRQChr01g0015201 Helianthus annuus HOM05D003415 ORTHO05D001594 1.0e-09 67.4 106 40.6
arahy.Tifrunner.gnm1.ann1.NIIH12 Arachis hypogaea HOM05D003415 ORTHO05D001594 1.4e-09 67.0 99 40.4
BcaC03g17671 Brassica carinata HOM05D003415 ORTHO05D001594 1.4e-09 67.0 65 55.4
MELO3C024046.2 Cucumis melo HOM05D003415 ORTHO05D001594 1.4e-09 67.0 77 50.6
Peaxi162Scf00520g00078 Petunia axillaris HOM05D003415 ORTHO05D001594 1.4e-09 67.0 97 37.1
Cc01_g16890 Coffea canephora HOM05D003415 ORTHO05D001594 1.8e-09 66.6 104 36.5
Eucgr.H00791 Eucalyptus grandis HOM05D003415 ORTHO05D001594 1.8e-09 66.6 103 42.7
FvH4_2g18790 Fragaria vesca HOM05D003415 ORTHO05D001594 1.8e-09 66.6 101 42.6
FAN15G3328 Fragaria x ananassa HOM05D003415 ORTHO05D001594 1.8e-09 66.6 101 42.6
FAN27G2123 Fragaria x ananassa HOM05D003415 ORTHO05D001594 1.8e-09 66.6 101 42.6
TWI75G1556 Tripterygium wilfordii HOM05D003415 ORTHO05D001594 1.8e-09 66.6 103 37.9
Actinidia23718 Actinidia chinensis HOM05D003415 ORTHO05D001594 2.3e-09 66.2 106 36.8
Manes.13G046900 Manihot esculenta HOM05D003415 ORTHO05D001594 2.3e-09 66.2 97 41.2
TWI60G1308 Tripterygium wilfordii HOM05D003415 ORTHO05D001594 2.3e-09 66.2 102 36.3
TAR636G3032 Trochodendron aralioides HOM05D003415 ORTHO05D001594 2.3e-09 66.2 109 40.4
MSTRG.21867 Avicennia marina HOM05D003415 ORTHO05D001594 3.1e-09 65.9 100 41.0
CSS0028538 Camellia sinensis var. sinensis HOM05D003415 ORTHO05D001594 3.1e-09 65.9 102 39.2
CsaV3_3G029960 Cucumis sativus L. HOM05D003415 ORTHO05D001594 4.0e-09 65.5 74 51.4
Medtr8g013095 Medicago truncatula HOM05D003415 ORTHO05D001594 4.0e-09 65.5 105 41.9
Sed0000990 Sechium edule HOM05D003415 ORTHO05D001594 4.0e-09 65.5 88 47.7
arahy.Tifrunner.gnm1.ann1.FUXK5I Arachis hypogaea HOM05D003415 ORTHO05D001594 6.8e-09 64.7 103 41.7
Manes.13G046800 Manihot esculenta HOM05D003415 ORTHO05D001594 6.8e-09 64.7 103 39.8
PGSC0003DMG400032241 Solanum tuberosum HOM05D003415 ORTHO05D001594 6.8e-09 64.7 97 39.2
Lj3g0005113 Lotus japonicus HOM05D003415 ORTHO05D001594 8.9e-09 64.3 102 41.2
Oeu053312.2 Olea europaea HOM05D003415 ORTHO05D001594 8.9e-09 64.3 97 38.1
Cc03_g04120 Coffea canephora HOM05D003415 ORTHO05D001594 1.2e-08 63.9 97 36.1
Lj2A1128G42 Lonicera japonica HOM05D003415 ORTHO05D001594 1.2e-08 63.9 103 35.9
Sabra02G0185700 Salix brachista HOM05D003415 ORTHO05D001594 1.5e-08 63.5 107 42.1
TPR.G17145 Trifolium pratense HOM05D003415 ORTHO05D001594 1.5e-08 63.5 102 41.2
TWI18G0281 Tripterygium wilfordii HOM05D003415 ORTHO05D001594 1.5e-08 63.5 103 33.0
CAN.G1402.7 Capsicum annuum HOM05D003415 ORTHO05D001594 2.0e-08 63.2 97 37.1
Haze_24816 Corylus avellana HOM05D003415 ORTHO05D001594 2.0e-08 63.2 79 46.8
Psat0s4384g0080 Pisum sativum HOM05D003415 ORTHO05D001594 2.0e-08 63.2 103 35.9
TPR.G14528 Trifolium pratense HOM05D003415 ORTHO05D001594 2.6e-08 62.8 96 40.6
arahy.Tifrunner.gnm1.ann1.NLS2AK Arachis hypogaea HOM05D003415 ORTHO05D001594 3.4e-08 62.4 103 39.8
Rhsim01G0255100 Rhododendron simsii HOM05D003415 ORTHO05D001594 3.4e-08 62.4 103 39.8
Sed0004220 Sechium edule HOM05D003415 ORTHO05D001594 4.4e-08 62.0 88 45.5
SGA_v2.0_scaffold79G25582 Striga asiatica HOM05D003415 ORTHO05D001594 4.4e-08 62.0 106 36.8
TWI81G0623 Tripterygium wilfordii HOM05D003415 ORTHO05D001594 4.4e-08 62.0 102 33.3
Solyc09g082490.4 Solanum lycopersicum HOM05D003415 ORTHO05D001594 5.8e-08 61.6 97 37.1
vmacro14746 Vaccinium macrocarpon HOM05D003415 ORTHO05D001594 5.8e-08 61.6 105 37.1
QL09p053183 Quercus lobata HOM05D003415 ORTHO05D001594 7.5e-08 61.2 99 38.4
Sopen09g031350 Solanum pennellii HOM05D003415 ORTHO05D001594 7.5e-08 61.2 97 36.1
unitig_748.g7299 Utricularia gibba HOM05D003415 ORTHO05D001594 7.5e-08 61.2 105 35.2
Actinidia30068 Actinidia chinensis HOM05D003415 ORTHO05D001594 9.8e-08 60.8 102 37.3
Actinidia09476 Actinidia chinensis HOM05D003415 ORTHO05D001594 1.3e-07 60.5 97 40.2
Potri.002G244000 Populus trichocarpa HOM05D003415 ORTHO05D001594 2.2e-07 59.7 103 38.8
QL05p058688 Quercus lobata HOM05D003415 ORTHO05D001594 2.9e-07 59.3 99 37.4
Dinv19191 Davidia involucrata HOM05D003415 ORTHO05D001594 3.7e-07 58.9 102 38.2
Lalb_Chr19g0125701 Lupinus albus HOM05D003415 ORTHO05D001594 3.7e-07 58.9 105 36.2
CSS0043801 Camellia sinensis var. sinensis HOM05D003415 ORTHO05D001594 4.9e-07 58.5 103 35.9
arahy.Tifrunner.gnm1.ann1.M88YV2 Arachis hypogaea HOM05D003415 ORTHO05D001594 6.4e-07 58.2 96 39.6
SGA_v2.0_scaffold165G38284 Striga asiatica HOM05D003415 ORTHO05D001594 6.4e-07 58.2 105 36.2
MSTRG.4050 Avicennia marina HOM05D003415 ORTHO05D001594 8.3e-07 57.8 106 36.8
MSTRG.9963 Avicennia marina HOM05D003415 ORTHO05D001594 1.1e-06 57.4 95 40.0
Ca_17420_v3 Cicer arietinum L. HOM05D003415 ORTHO05D001594 1.4e-06 57.0 93 41.9
ClCG07G001990 Citrullus lanatus HOM05D003415 ORTHO05D001594 1.9e-06 56.6 117 35.9
Sc05g0002030 Simmondsia chinensis HOM05D003415 ORTHO05D001594 2.4e-06 56.2 92 37.0
Sc17g0002270 Simmondsia chinensis HOM05D003415 ORTHO05D001594 3.2e-06 55.8 88 35.2
ECA247G1071 Erigeron canadensis HOM05D003415 ORTHO05D001594 7.0e-06 54.7 103 39.8
Migut.G00369 Erythranthe guttata HOM05D003415 ORTHO05D001594 9.2e-06 54.3 106 34.0
HanXRQChr10g0279401 Helianthus annuus HOM05D003415 ORTHO05D001594 9.2e-06 54.3 107 37.4
Lj1g0007221 Lotus japonicus HOM05D003415 ORTHO05D001594 9.2e-06 54.3 92 35.9


User provided reference genes

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