Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p05750 Brassica napus HOM05D005132 ORTHO05D005823 2.2e-70 268.9 136 100.0
BcaC06g34857 Brassica carinata HOM05D005132 ORTHO05D005823 6.2e-57 224.2 122 93.4
Sp6g36750 Schrenkiella parvula HOM05D005132 ORTHO05D005823 1.7e-54 216.1 122 91.8
Thhalv10013711m.g Eutrema salsugineum HOM05D005132 ORTHO05D005823 3.2e-53 211.8 122 89.3
BcaC06g32323 Brassica carinata HOM05D005132 ORTHO05D005823 1.2e-52 209.9 122 88.5
A10p30280 Brassica napus HOM05D005132 ORTHO05D005823 1.2e-52 209.9 122 88.5
C09p70690 Brassica napus HOM05D005132 ORTHO05D005823 1.2e-52 209.9 122 88.5
BolC9t59825H Brassica oleracea HOM05D005132 ORTHO05D005823 1.2e-52 209.9 122 88.5
BraA10t45066Z Brassica rapa HOM05D005132 ORTHO05D005823 1.2e-52 209.9 122 88.5
Aa31LG11G7120 Aethionema arabicum HOM05D005132 ORTHO05D005823 2.1e-52 209.1 122 86.1
AL6G16110 Arabidopsis lyrata HOM05D005132 ORTHO05D005823 1.7e-51 206.1 122 88.5
CARHR206850 Cardamine hirsuta HOM05D005132 ORTHO05D005823 3.0e-51 205.3 122 86.9
BcaC01g04574 Brassica carinata HOM05D005132 ORTHO05D005823 1.1e-50 203.4 125 86.4
AT5G06140 Arabidopsis thaliana HOM05D005132 ORTHO05D005823 2.5e-50 202.2 122 86.9
Carub.0006s0502 Capsella rubella HOM05D005132 ORTHO05D005823 3.3e-50 201.8 122 86.9
THA.LOC104816597 Tarenaya hassleriana HOM05D005132 ORTHO05D005823 4.8e-49 198.0 122 81.1
MD12G1029600 Malus domestica HOM05D005132 ORTHO05D005823 2.4e-48 195.7 122 82.0
Prupe.7G102200 Prunus persica HOM05D005132 ORTHO05D005823 2.4e-48 195.7 122 82.0
CiPaw.09G016600 Carya illinoinensis HOM05D005132 ORTHO05D005823 4.0e-48 194.9 122 82.8
RcHm_v2.0_Chr3g0474681 Rosa chinensis HOM05D005132 ORTHO05D005823 5.3e-48 194.5 122 81.1
Duzib106G2047 Durio zibethinus HOM05D005132 ORTHO05D005823 6.9e-48 194.1 122 82.8
Hma1.2p1_0769F.1_g215730 Hydrangea macrophylla HOM05D005132 ORTHO05D005823 9.0e-48 193.7 122 81.1
Hma1.2p1_0769F.1_g215740 Hydrangea macrophylla HOM05D005132 ORTHO05D005823 9.0e-48 193.7 122 81.1
Sabra16G0079100 Salix brachista HOM05D005132 ORTHO05D005823 9.0e-48 193.7 122 82.0
Sabra16G0081700 Salix brachista HOM05D005132 ORTHO05D005823 9.0e-48 193.7 122 82.0
FAN02G1643 Fragaria x ananassa HOM05D005132 ORTHO05D005823 1.2e-47 193.4 122 80.3
FAN05G1205 Fragaria x ananassa HOM05D005132 ORTHO05D005823 1.2e-47 193.4 122 80.3
Potri.016G076400 Populus trichocarpa HOM05D005132 ORTHO05D005823 2.6e-47 192.2 122 81.1
GSVIVG01033883001 Vitis vinifera HOM05D005132 ORTHO05D005823 2.6e-47 192.2 122 81.1
Cfa016640 Carpinus fangiana HOM05D005132 ORTHO05D005823 3.4e-47 191.8 122 80.3
Ciclev10013553m.g Citrus clementina HOM05D005132 ORTHO05D005823 3.4e-47 191.8 122 79.5
Haze_19646 Corylus avellana HOM05D005132 ORTHO05D005823 3.4e-47 191.8 122 80.3
FvH4_6g19390 Fragaria vesca HOM05D005132 ORTHO05D005823 3.4e-47 191.8 122 79.5
FAN14G5731 Fragaria x ananassa HOM05D005132 ORTHO05D005823 3.4e-47 191.8 122 79.5
Aqoxy2G01075 Aquilegia oxysepala HOM05D005132 ORTHO05D005823 5.8e-47 191.0 122 79.5
Lsat_1_v5_gn_5_165621 Lactuca sativa HOM05D005132 ORTHO05D005823 5.8e-47 191.0 122 81.1
CSS0005836 Camellia sinensis var. sinensis HOM05D005132 ORTHO05D005823 7.6e-47 190.7 122 80.3
CSS0048654 Camellia sinensis var. sinensis HOM05D005132 ORTHO05D005823 7.6e-47 190.7 122 80.3
Dinv21174 Davidia involucrata HOM05D005132 ORTHO05D005823 7.6e-47 190.7 122 80.3
QL07p038312 Quercus lobata HOM05D005132 ORTHO05D005823 7.6e-47 190.7 122 81.1
TAR633G0805 Trochodendron aralioides HOM05D005132 ORTHO05D005823 7.6e-47 190.7 122 79.5
Gohir.A09G141200 Gossypium hirsutum HOM05D005132 ORTHO05D005823 9.9e-47 190.3 122 82.0
Actinidia05405 Actinidia chinensis HOM05D005132 ORTHO05D005823 1.3e-46 189.9 122 80.3
COL.COLO4_03548 Corchorus olitorius HOM05D005132 ORTHO05D005823 1.3e-46 189.9 122 78.7
TAR623G1340 Trochodendron aralioides HOM05D005132 ORTHO05D005823 1.3e-46 189.9 122 81.1
Duzib093G1682 Durio zibethinus HOM05D005132 ORTHO05D005823 1.7e-46 189.5 122 81.1
Phvul.007G153200 Phaseolus vulgaris HOM05D005132 ORTHO05D005823 1.7e-46 189.5 122 80.3
MD14G1029900 Malus domestica HOM05D005132 ORTHO05D005823 2.2e-46 189.1 122 81.1
VMungo0720G1157 Vigna mungo HOM05D005132 ORTHO05D005823 2.2e-46 189.1 122 79.5
Gohir.D04G097400 Gossypium hirsutum HOM05D005132 ORTHO05D005823 2.9e-46 188.7 122 79.5
Gohir.D09G133500 Gossypium hirsutum HOM05D005132 ORTHO05D005823 2.9e-46 188.7 122 82.0
Gorai.006G153000 Gossypium raimondii HOM05D005132 ORTHO05D005823 2.9e-46 188.7 122 82.0
Thecc.05G094200 Theobroma cacao HOM05D005132 ORTHO05D005823 2.9e-46 188.7 122 79.5
CDE06G1014 Ceratophyllum demersum HOM05D005132 ORTHO05D005823 3.8e-46 188.3 122 77.9
MELO3C024558.2 Cucumis melo HOM05D005132 ORTHO05D005823 4.9e-46 188.0 122 79.5
Glyma.02G201400 Glycine max HOM05D005132 ORTHO05D005823 4.9e-46 188.0 122 78.7
Lj5g0026419 Lotus japonicus HOM05D005132 ORTHO05D005823 4.9e-46 188.0 122 79.5
Potri.006G209600 Populus trichocarpa HOM05D005132 ORTHO05D005823 4.9e-46 188.0 122 79.5
Dinv31714 Davidia involucrata HOM05D005132 ORTHO05D005823 6.4e-46 187.6 122 80.3
Rhsim03G0070200 Rhododendron simsii HOM05D005132 ORTHO05D005823 6.4e-46 187.6 122 79.5
Atru.chr8.1454 Acer truncatum HOM05D005132 ORTHO05D005823 8.4e-46 187.2 122 77.9
Peaxi162Scf00069g00611 Petunia axillaris HOM05D005132 ORTHO05D005823 8.4e-46 187.2 122 77.9
Nn6g34827 Nelumbo nucifera HOM05D005132 ORTHO05D005823 1.1e-45 186.8 122 77.9
CsaV3_6G040790 Cucumis sativus L. HOM05D005132 ORTHO05D005823 1.4e-45 186.4 122 78.7
TWI77G0075 Tripterygium wilfordii HOM05D005132 ORTHO05D005823 1.4e-45 186.4 122 77.9
CDE08G1477 Ceratophyllum demersum HOM05D005132 ORTHO05D005823 1.9e-45 186.0 122 76.2
Glyma.10G075200 Glycine max HOM05D005132 ORTHO05D005823 1.9e-45 186.0 122 77.9
Manes.09G053000 Manihot esculenta HOM05D005132 ORTHO05D005823 1.9e-45 186.0 122 77.9
Nn2g14214 Nelumbo nucifera HOM05D005132 ORTHO05D005823 1.9e-45 186.0 122 78.7
Ca_30897_v3 Cicer arietinum L. HOM05D005132 ORTHO05D005823 2.4e-45 185.7 122 79.5
CSS0032993 Camellia sinensis var. sinensis HOM05D005132 ORTHO05D005823 5.4e-45 184.5 122 79.5
Sed0017122 Sechium edule HOM05D005132 ORTHO05D005823 5.4e-45 184.5 122 77.0
PGSC0003DMG400008862 Solanum tuberosum HOM05D005132 ORTHO05D005823 5.4e-45 184.5 122 76.2
TWI74G0814 Tripterygium wilfordii HOM05D005132 ORTHO05D005823 5.4e-45 184.5 122 77.9
Nitab4.5_0001875g0030 Nicotiana tabacum HOM05D005132 ORTHO05D005823 7.1e-45 184.1 122 76.2
PSO339G3236 Papaver somniferum HOM05D005132 ORTHO05D005823 7.1e-45 184.1 122 77.0
PSO801G0294 Papaver somniferum HOM05D005132 ORTHO05D005823 7.1e-45 184.1 122 77.0
Solyc09g010130.4 Solanum lycopersicum HOM05D005132 ORTHO05D005823 7.1e-45 184.1 122 76.2
Sopen09g004870 Solanum pennellii HOM05D005132 ORTHO05D005823 7.1e-45 184.1 122 76.2
Cc00_g15480 Coffea canephora HOM05D005132 ORTHO05D005823 9.3e-45 183.7 122 79.5
arahy.Tifrunner.gnm1.ann1.3C6LBG Arachis hypogaea HOM05D005132 ORTHO05D005823 1.2e-44 183.3 122 78.7
arahy.Tifrunner.gnm1.ann1.XB6NYF Arachis hypogaea HOM05D005132 ORTHO05D005823 1.2e-44 183.3 122 78.7
Lj2A142G15 Lonicera japonica HOM05D005132 ORTHO05D005823 1.2e-44 183.3 122 76.2
Gorai.009G400000 Gossypium raimondii HOM05D005132 ORTHO05D005823 1.6e-44 183.0 126 77.0
vmacro07442 Vaccinium macrocarpon HOM05D005132 ORTHO05D005823 1.6e-44 183.0 132 75.0
CAN.G397.82 Capsicum annuum HOM05D005132 ORTHO05D005823 2.7e-44 182.2 122 75.4
SalBow3G0486 Salvia bowleyana HOM05D005132 ORTHO05D005823 2.7e-44 182.2 122 75.4
Migut.J01005 Erythranthe guttata HOM05D005132 ORTHO05D005823 3.5e-44 181.8 122 76.2
PGR004G2516 Punica granatum HOM05D005132 ORTHO05D005823 3.5e-44 181.8 122 77.9
HPP92_001972 Vanilla planifolia HOM05D005132 ORTHO05D005823 3.5e-44 181.8 122 73.0
DCAR_013410 Daucus carota HOM05D005132 ORTHO05D005823 6.0e-44 181.0 122 78.7
Gohir.A04G048400 Gossypium hirsutum HOM05D005132 ORTHO05D005823 6.0e-44 181.0 122 77.0
Ah.08g210440 Amaranthus hybridus HOM05D002070 ORTHO05D005823 1.3e-43 179.9 122 76.2
EL10Ac7g16880 Beta vulgaris HOM05D005132 ORTHO05D005823 1.3e-43 179.9 122 74.6
Sabra06G0161500 Salix brachista HOM05D005132 ORTHO05D005823 1.3e-43 179.9 122 77.0
Medtr1g059650 Medicago truncatula HOM05D005132 ORTHO05D005823 1.8e-43 179.5 122 77.0
Cpa.g.sc104.100 Carica papaya HOM05D005132 ORTHO05D005823 2.3e-43 179.1 120 78.3
Lalb_Chr02g0154801 Lupinus albus HOM05D005132 ORTHO05D005823 2.3e-43 179.1 122 76.2
CSS0047631 Camellia sinensis var. sinensis HOM05D005132 ORTHO05D005823 3.0e-43 178.7 122 79.5
Psat6g084200 Pisum sativum HOM05D005132 ORTHO05D005823 3.0e-43 178.7 122 77.0
MSTRG.26627 Avicennia marina HOM05D005132 ORTHO05D005823 3.9e-43 178.3 122 77.0
HanXRQChr13g0390111 Helianthus annuus HOM05D005132 ORTHO05D005823 3.9e-43 178.3 122 75.4
HanXRQChr01g0010191 Helianthus annuus HOM05D005132 ORTHO05D005823 5.1e-43 177.9 122 75.4
SGA_v2.0_scaffold318G48481 Striga asiatica HOM05D005132 ORTHO05D005823 5.1e-43 177.9 122 75.4
TPR.G14792 Trifolium pratense HOM05D005132 ORTHO05D005823 6.7e-43 177.6 122 77.0
BolC7t42788H Brassica oleracea HOM05D005132 ORTHO05D005823 8.7e-43 177.2 132 73.5
Hund03937 Selenicereus undatus HOM05D005132 ORTHO05D005823 8.7e-43 177.2 122 73.0
CANSAT64G2405 Cannabis sativa HOM05D005132 ORTHO05D005823 1.1e-42 176.8 122 72.1
Eucgr.A02640 Eucalyptus grandis HOM05D005132 ORTHO05D005823 1.5e-42 176.4 122 76.2
Oeu056871.1 Olea europaea HOM05D005132 ORTHO05D005823 1.5e-42 176.4 122 73.8
BolC3t15920H Brassica oleracea HOM05D005132 ORTHO05D005823 2.5e-42 175.6 132 73.5
Ca_22304_v3 Cicer arietinum L. HOM05D005132 ORTHO05D005823 1.6e-41 172.9 144 67.4
ATR0820G210 Amborella trichopoda HOM05D005132 ORTHO05D005823 2.8e-41 172.2 122 72.1
BcaC06g32586 Brassica carinata HOM05D005132 ORTHO05D005823 2.8e-41 172.2 99 88.9
Zm00001eb147050 Zea mays HOM05D005132 ORTHO05D005823 2.8e-41 172.2 122 74.6
C07p22110 Brassica napus HOM05D005132 ORTHO05D005823 1.8e-40 169.5 127 73.2
AUR62006221 Chenopodium quinoa HOM05D005132 ORTHO05D005823 1.8e-40 169.5 121 72.7
Oeu017691.1 Olea europaea HOM05D005132 ORTHO05D005823 2.4e-40 169.1 122 73.0
Zm00001eb366800 Zea mays HOM05D005132 ORTHO05D005823 9.0e-40 167.2 122 73.0
ClCG04G010170 Citrullus lanatus HOM05D005132 ORTHO05D005823 1.2e-39 166.8 162 59.3
Os01g0862300 Oryza sativa ssp. japonica HOM05D005132 ORTHO05D005823 1.5e-39 166.4 122 71.3
Sc02g0000440 Simmondsia chinensis HOM05D005132 ORTHO05D005823 2.0e-39 166.0 111 77.5
Ah.15g090790 Amaranthus hybridus HOM05D005132 ORTHO05D005823 2.6e-39 165.6 122 70.5
SHI23818 Sapria himalayana HOM05D005132 ORTHO05D005823 1.4e-37 159.8 122 68.9
SEGI_36568 Sequoiadendron giganteum HOM05D005132 ORTHO05D005823 1.4e-37 159.8 122 66.4
Hund19900 Selenicereus undatus HOM05D005132 ORTHO05D005823 1.2e-36 156.8 122 68.0
SMO347G0437 Selaginella moellendorffii HOM05D005132 ORTHO05D005823 6.7e-35 151.0 123 61.8
Mapoly0051s0019 Marchantia polymorpha HOM05D005132 ORTHO05D005823 1.1e-34 150.2 123 62.6
AagrBONN_evm.TU.Sc2ySwM_362.2636 Anthoceros agrestis HOM05D005132 ORTHO05D005823 4.8e-33 144.8 122 63.1
Pp3c4_27410 Physcomitrium patens HOM05D005132 ORTHO05D005823 5.3e-32 141.4 123 59.3
CBR_g20439 Chara braunii HOM05D005132 ORTHO05D005823 1.3e-25 120.2 123 52.8
unitig_8.g4044 Utricularia gibba HOM05D005132 ORTHO05D005823 8.5e-22 107.5 111 55.9
ECA248G1378 Erigeron canadensis HOM05D005132 ORTHO05D005823 2.7e-20 102.4 77 70.1
BcaB05g21681 Brassica carinata HOM05D000493 ORTHO05D005823 6.1e-20 101.3 52 96.2
C02p02600 Brassica napus HOM05D000493 ORTHO05D005823 6.1e-20 101.3 52 96.2
BolC2t06226H Brassica oleracea HOM05D000493 ORTHO05D005823 6.1e-20 101.3 52 96.2
ECA248G2482 Erigeron canadensis HOM05D005132 ORTHO05D005823 8.2e-17 90.9 58 77.6
Cre06.g281050 Chlamydomonas reinhardtii HOM05D005132 ORTHO05D005823 3.3e-10 68.9 124 35.5
PRCOL_00000759 Prasinoderma coloniale HOM05D005132 ORTHO05D005823 4.8e-09 65.1 127 37.8
GSVIVG01024302001 Vitis vinifera HOM05D005132 ORTHO05D005823 8.2e-09 64.3 42 78.6


User provided reference genes

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