Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p01380 Brassica napus HOM05D006355 ORTHO05D008284 3.3e-150 535.0 272 100.0
C07p02840 Brassica napus HOM05D006355 ORTHO05D008284 8.4e-146 520.4 271 97.0
BolC7t40681H Brassica oleracea HOM05D006355 ORTHO05D008284 8.4e-146 520.4 271 97.0
BcaC06g36568 Brassica carinata HOM05D006355 ORTHO05D008284 1.9e-145 519.2 272 97.1
BraA07t27933Z Brassica rapa HOM05D006355 ORTHO05D008284 6.6e-135 484.2 272 94.9
BcaB03g16724 Brassica carinata HOM05D006355 ORTHO05D008284 2.5e-118 429.1 278 83.8
Sp3g32760 Schrenkiella parvula HOM05D006355 ORTHO05D008284 8.4e-114 414.1 284 80.3
Thhalv10022802m.g Eutrema salsugineum HOM05D006355 ORTHO05D008284 3.3e-110 402.1 287 76.7
Carub.0003s3364 Capsella rubella HOM05D006355 ORTHO05D008284 2.6e-107 392.5 287 74.6
AT2G19385 Arabidopsis thaliana HOM05D006355 ORTHO05D008284 6.7e-103 377.9 285 72.3
CARHR109830 Cardamine hirsuta HOM05D006355 ORTHO05D008284 2.5e-102 375.9 283 72.4
AL3G48940 Arabidopsis lyrata HOM05D006355 ORTHO05D008284 2.4e-100 369.4 287 70.0
Aa31LG8G16390 Aethionema arabicum HOM05D006355 ORTHO05D008284 1.2e-83 313.9 290 62.8
GSVIVG01015151001 Vitis vinifera HOM05D006355 ORTHO05D008284 1.5e-78 297.0 289 58.5
Cpa.g.sc28.115 Carica papaya HOM05D006355 ORTHO05D008284 2.6e-78 296.2 327 55.4
arahy.Tifrunner.gnm1.ann1.I94R61 Arachis hypogaea HOM05D006355 ORTHO05D008284 4.8e-77 292.0 306 56.5
PGR142G1993 Punica granatum HOM05D006355 ORTHO05D008284 5.4e-76 288.5 300 55.7
Sed0027351 Sechium edule HOM05D006355 ORTHO05D008284 1.2e-75 287.3 310 52.9
Hma1.2p1_0672F.1_g200900 Hydrangea macrophylla HOM05D006355 ORTHO05D008284 1.6e-75 287.0 321 54.2
HanXRQChr12g0354551 Helianthus annuus HOM05D006355 ORTHO05D008284 3.5e-75 285.8 285 54.7
RcHm_v2.0_Chr2g0094111 Rosa chinensis HOM05D006355 ORTHO05D008284 2.9e-74 282.7 309 53.7
Prupe.7G204300 Prunus persica HOM05D006355 ORTHO05D008284 5.0e-74 282.0 303 54.5
Nitab4.5_0002079g0060 Nicotiana tabacum HOM05D006355 ORTHO05D008284 6.5e-74 281.6 311 52.7
Peaxi162Scf00494g00027 Petunia axillaris HOM05D006355 ORTHO05D008284 6.5e-74 281.6 318 52.8
Cfa003044 Carpinus fangiana HOM05D006355 ORTHO05D008284 4.2e-73 278.9 313 52.1
Lj4A288G20 Lonicera japonica HOM05D006355 ORTHO05D008284 4.2e-73 278.9 326 52.5
Manes.16G098900 Manihot esculenta HOM05D006355 ORTHO05D008284 9.4e-73 277.7 327 53.5
Aqoxy7G01135 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 1.2e-72 277.3 316 52.2
Eucgr.C00847 Eucalyptus grandis HOM05D006355 ORTHO05D008284 1.6e-72 276.9 327 50.5
Glyma.13G107200 Glycine max HOM05D006355 ORTHO05D008284 1.6e-72 276.9 308 52.6
Lsat_1_v5_gn_5_143521 Lactuca sativa HOM05D006355 ORTHO05D008284 1.6e-72 276.9 273 56.8
Haze_25952 Corylus avellana HOM05D006355 ORTHO05D008284 2.1e-72 276.6 320 51.2
QL02p061794 Quercus lobata HOM05D006355 ORTHO05D008284 2.1e-72 276.6 323 50.5
Rhsim05G0014000 Rhododendron simsii HOM05D006355 ORTHO05D008284 2.1e-72 276.6 332 51.5
Atru.chr7.1648 Acer truncatum HOM05D006355 ORTHO05D008284 2.7e-72 276.2 327 51.4
Migut.L01533 Erythranthe guttata HOM05D006355 ORTHO05D008284 3.6e-72 275.8 312 52.2
Oeu010827.1 Olea europaea HOM05D006355 ORTHO05D008284 3.6e-72 275.8 299 54.5
Thecc.09G082800 Theobroma cacao HOM05D006355 ORTHO05D008284 4.7e-72 275.4 330 50.6
QL02p061767 Quercus lobata HOM05D006355 ORTHO05D008284 8.0e-72 274.6 323 50.2
FvH4_1g08060 Fragaria vesca HOM05D006355 ORTHO05D008284 1.0e-71 274.2 307 51.5
FAN19G0491 Fragaria x ananassa HOM05D006355 ORTHO05D008284 1.0e-71 274.2 307 51.5
CiPaw.03G211000 Carya illinoinensis HOM05D006355 ORTHO05D008284 1.8e-71 273.5 327 51.7
MELO3C004639.2 Cucumis melo HOM05D006355 ORTHO05D008284 1.8e-71 273.5 316 52.2
Psat4g016280 Pisum sativum HOM05D006355 ORTHO05D008284 1.8e-71 273.5 311 53.1
ClCG11G001610 Citrullus lanatus HOM05D006355 ORTHO05D008284 2.3e-71 273.1 319 52.4
CANSAT56G3969 Cannabis sativa HOM05D006355 ORTHO05D008284 4.0e-71 272.3 313 53.7
Phvul.003G133900 Phaseolus vulgaris HOM05D006355 ORTHO05D008284 5.2e-71 271.9 318 51.6
CANSAT56G1278 Cannabis sativa HOM05D006355 ORTHO05D008284 6.8e-71 271.6 313 53.7
Ca_21303_v3 Cicer arietinum L. HOM05D006355 ORTHO05D008284 6.8e-71 271.6 317 51.4
SalBow1G0189 Salvia bowleyana HOM05D006355 ORTHO05D008284 8.8e-71 271.2 320 50.0
Gohir.D07G013200 Gossypium hirsutum HOM05D006355 ORTHO05D008284 1.5e-70 270.4 322 49.7
ECA234G3558 Erigeron canadensis HOM05D006355 ORTHO05D008284 2.0e-70 270.0 293 52.9
FAN23G1962 Fragaria x ananassa HOM05D006355 ORTHO05D008284 2.0e-70 270.0 307 51.5
Glyma.17G052200 Glycine max HOM05D006355 ORTHO05D008284 2.6e-70 269.6 309 51.8
Gohir.A07G013400 Gossypium hirsutum HOM05D006355 ORTHO05D008284 2.6e-70 269.6 322 49.7
Lj4g0004716 Lotus japonicus HOM05D006355 ORTHO05D008284 2.6e-70 269.6 316 51.3
CsaV3_2G001300 Cucumis sativus L. HOM05D006355 ORTHO05D008284 3.4e-70 269.2 316 53.2
FAN28G1606 Fragaria x ananassa HOM05D006355 ORTHO05D008284 3.4e-70 269.2 312 51.3
Solyc07g041020.3 Solanum lycopersicum HOM05D006355 ORTHO05D008284 3.4e-70 269.2 312 50.3
TPR.G9437 Trifolium pratense HOM05D006355 ORTHO05D008284 3.4e-70 269.2 309 52.4
Gorai.001G013900 Gossypium raimondii HOM05D006355 ORTHO05D008284 5.7e-70 268.5 322 49.4
FAN26G2768 Fragaria x ananassa HOM05D006355 ORTHO05D008284 2.2e-69 266.5 319 50.5
Sopen07g020150 Solanum pennellii HOM05D006355 ORTHO05D008284 2.2e-69 266.5 309 50.2
FAN26G1509 Fragaria x ananassa HOM05D006355 ORTHO05D008284 2.8e-69 266.2 319 49.8
Nitab4.5_0002842g0040 Nicotiana tabacum HOM05D006355 ORTHO05D008284 3.7e-69 265.8 326 49.7
CAN.G35.5 Capsicum annuum HOM05D006355 ORTHO05D008284 4.9e-69 265.4 312 48.4
TWI34G0237 Tripterygium wilfordii HOM05D006355 ORTHO05D008284 8.3e-69 264.6 307 51.5
Cc06_g11800 Coffea canephora HOM05D006355 ORTHO05D008284 1.4e-68 263.8 330 49.1
PGSC0003DMG400014101 Solanum tuberosum HOM05D006355 ORTHO05D008284 2.4e-68 263.1 309 50.8
Ciclev10008972m.g Citrus clementina HOM05D006355 ORTHO05D008284 4.1e-68 262.3 313 51.1
TAR413G0001 Trochodendron aralioides HOM05D006355 ORTHO05D008284 5.4e-68 261.9 330 50.0
Medtr4g125720 Medicago truncatula HOM05D006355 ORTHO05D008284 1.6e-67 260.4 309 51.5
Hund08706 Selenicereus undatus HOM05D006355 ORTHO05D008284 4.5e-67 258.8 333 49.5
Lalb_Chr12g0199961 Lupinus albus HOM05D006355 ORTHO05D008284 5.9e-67 258.5 306 51.3
vmacro17166 Vaccinium macrocarpon HOM05D006355 ORTHO05D008284 1.5e-65 253.8 305 49.8
DCAR_024718 Daucus carota HOM05D006355 ORTHO05D008284 3.3e-65 252.7 316 49.4
SGA_v2.0_scaffold21G09447 Striga asiatica HOM05D006355 ORTHO05D008284 2.8e-64 249.6 303 49.5
CDE06G0893 Ceratophyllum demersum HOM05D006355 ORTHO05D008284 1.8e-63 246.9 316 48.1
Nn8g38760 Nelumbo nucifera HOM05D006355 ORTHO05D008284 2.3e-63 246.5 325 49.2
Nn8g41302 Nelumbo nucifera HOM05D006355 ORTHO05D008284 2.3e-63 246.5 325 49.2
Os01g0583200 Oryza sativa ssp. japonica HOM05D006355 ORTHO05D008284 4.0e-63 245.7 305 48.2
Potri.006G146200 Populus trichocarpa HOM05D006355 ORTHO05D008284 4.0e-63 245.7 327 48.3
AUR62025162 Chenopodium quinoa HOM05D006355 ORTHO05D008284 1.2e-62 244.2 319 48.6
Zm00001eb357030 Zea mays HOM05D006355 ORTHO05D008284 4.9e-61 238.8 294 46.9
AUR62029015 Chenopodium quinoa HOM05D006355 ORTHO05D008284 6.4e-61 238.4 328 46.3
Duzib168G2189 Durio zibethinus HOM05D006355 ORTHO05D008284 5.4e-60 235.3 321 46.1
arahy.Tifrunner.gnm1.ann1.2VE13Z Arachis hypogaea HOM05D006355 ORTHO05D008284 2.7e-59 233.0 306 50.0
ATR0051G027 Amborella trichopoda HOM05D006355 ORTHO05D008284 1.0e-58 231.1 318 46.5
Gohir.A05G032100 Gossypium hirsutum HOM05D006355 ORTHO05D008284 1.9e-57 226.9 302 46.7
Sc08g0008680 Simmondsia chinensis HOM05D006355 ORTHO05D008284 6.2e-56 221.9 327 47.4
COL.COLO4_18155 Corchorus olitorius HOM05D006355 ORTHO05D008284 5.2e-55 218.8 329 44.7
PSO063G0296 Papaver somniferum HOM05D006355 ORTHO05D008284 5.2e-55 218.8 307 45.6
VMungo1215G0260 Vigna mungo HOM05D006355 ORTHO05D008284 3.4e-54 216.1 294 48.3
MBI11_g07532_MAGBIO Magnolia biondii HOM05D006355 ORTHO05D008284 7.5e-54 214.9 327 43.7
MD15G1212400 Malus domestica HOM05D006355 ORTHO05D008284 7.5e-54 214.9 312 46.5
PSO832G0549 Papaver somniferum HOM05D006355 ORTHO05D008284 3.7e-53 212.6 306 44.1
Sabra06G0115400 Salix brachista HOM05D006355 ORTHO05D008284 1.4e-52 210.7 366 41.5
Actinidia25231 Actinidia chinensis HOM05D006355 ORTHO05D008284 1.2e-51 207.6 128 73.4
EL10Ac8g19156 Beta vulgaris HOM05D006355 ORTHO05D008284 2.0e-51 206.8 401 37.2
MD02G1085300 Malus domestica HOM05D006355 ORTHO05D008284 3.5e-51 206.1 310 44.5
Dinv36798 Davidia involucrata HOM05D006355 ORTHO05D008284 1.0e-50 204.5 158 62.0
SEGI_15381 Sequoiadendron giganteum HOM05D006355 ORTHO05D008284 1.5e-49 200.7 292 43.2
Pp3c3_280 Physcomitrium patens HOM05D006355 ORTHO05D008284 7.1e-44 181.8 286 39.9
HPP92_009733 Vanilla planifolia HOM05D006355 ORTHO05D008284 7.1e-44 181.8 322 37.6
Carub.0003s3362 Capsella rubella HOM05D006355 ORTHO05D008284 3.0e-42 176.4 201 48.3
AL3G48950 Arabidopsis lyrata HOM05D006355 ORTHO05D008284 1.2e-38 164.5 191 47.6
SMO200G0211 Selaginella moellendorffii HOM05D006355 ORTHO05D008284 1.5e-38 164.1 281 35.6
AT2G19380 Arabidopsis thaliana HOM05D006355 ORTHO05D011679 3.8e-37 159.5 190 45.3
AagrBONN_evm.TU.Sc2ySwM_228.3887 Anthoceros agrestis HOM05D006355 ORTHO05D008284 6.4e-37 158.7 160 50.6
CBR_g39727 Chara braunii HOM05D006355 ORTHO05D008284 1.9e-36 157.1 156 49.4
Mapoly0108s0017 Marchantia polymorpha HOM05D006355 ORTHO05D008284 1.2e-35 154.5 271 40.6
unitig_8.g3528 Utricularia gibba HOM05D001583 ORTHO05D001900 6.4e-29 132.1 297 37.0
PRCOL_00003845 Prasinoderma coloniale HOM05D006355 ORTHO05D008284 1.7e-26 124.0 129 46.5
SGA_v2.0_scaffold23G10049 Striga asiatica HOM05D006355 ORTHO05D008284 1.7e-26 124.0 309 34.0
Cre17.g701050 Chlamydomonas reinhardtii HOM05D006355 ORTHO05D008284 4.3e-25 119.4 139 44.6
MCO07G733 Micromonas commoda HOM05D006355 ORTHO05D008284 3.2e-20 103.2 138 42.0
SHI23456 Sapria himalayana HOM05D006355 ORTHO05D008284 2.3e-18 97.1 71 60.6
SHI30666 Sapria himalayana HOM05D006355 ORTHO05D008284 1.5e-17 94.4 71 57.7
CSS0037261 Camellia sinensis var. sinensis HOM05D006355 ORTHO05D008284 9.6e-17 91.7 264 33.3
Aqoxy7G02122 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 4.8e-16 89.4 200 34.5
Aqoxy4G01928 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 9.0e-15 85.1 202 35.6
Migut.B00896 Erythranthe guttata HOM05D002142 ORTHO05D001189 2.9e-13 80.1 189 33.9
SHI30664 Sapria himalayana HOM05D006355 ORTHO05D008284 1.9e-12 77.4 180 34.4
Os01g0583300 Oryza sativa ssp. japonica HOM05D006355 ORTHO05D300111 8.1e-08 62.0 41 70.7
GSVIVG01008148001 Vitis vinifera HOM05D006355 ORTHO05D000948 4.5e-06 56.2 65 47.7


User provided reference genes

Program Settings