Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 3810.4 1967 100.0
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 0.0e+00 3795.4 1970 99.5
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 3731.0 1967 97.7
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 0.0e+00 3725.6 1970 97.6
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 0.0e+00 3221.0 1973 85.0
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 0.0e+00 3209.9 1967 86.1
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 0.0e+00 3195.6 1970 84.3
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 0.0e+00 3182.9 1974 83.2
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 0.0e+00 3181.0 1974 83.7
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 0.0e+00 3148.6 1970 82.5
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 0.0e+00 2820.8 2014 74.1
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 0.0e+00 2692.1 1978 70.2
Thecc.02G066600 Theobroma cacao HOM05D004110 ORTHO05D004810 0.0e+00 2040.8 1976 55.5
Cfa005187 Carpinus fangiana HOM05D004110 ORTHO05D004810 0.0e+00 2030.8 1979 55.9
CiPaw.06G125000 Carya illinoinensis HOM05D004110 ORTHO05D004810 0.0e+00 2026.1 1979 55.0
MD05G1116500 Malus domestica HOM05D004110 ORTHO05D004810 0.0e+00 2025.8 1980 55.2
Potri.009G130000 Populus trichocarpa HOM05D004110 ORTHO05D004810 0.0e+00 2022.7 1979 54.5
Prupe.8G161000 Prunus persica HOM05D004110 ORTHO05D004810 0.0e+00 2020.7 1983 54.5
Manes.04G077900 Manihot esculenta HOM05D004110 ORTHO05D004810 0.0e+00 2010.0 1984 54.3
QL11p047649 Quercus lobata HOM05D004110 ORTHO05D004810 0.0e+00 2007.6 2062 54.3
Dinv04965 Davidia involucrata HOM05D004110 ORTHO05D004810 0.0e+00 2001.1 1985 54.4
Gorai.008G034000 Gossypium raimondii HOM05D004110 ORTHO05D004810 0.0e+00 1985.3 1978 53.8
CANSAT25G3021 Cannabis sativa HOM05D004110 ORTHO05D004810 0.0e+00 1984.9 1979 54.3
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1971.8 1978 54.4
Ciclev10027667m.g Citrus clementina HOM05D004110 ORTHO05D004810 0.0e+00 1955.3 1982 53.9
Gohir.D12G033200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 1940.6 1974 53.1
Sabra09G0099400 Salix brachista HOM05D004110 ORTHO05D004810 0.0e+00 1922.5 2081 51.1
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 0.0e+00 1920.6 1978 53.2
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1908.3 1980 53.1
TWI79G0689 Tripterygium wilfordii HOM05D004110 ORTHO05D004810 0.0e+00 1906.3 1979 52.6
GSVIVG01024075001 Vitis vinifera HOM05D004110 ORTHO05D004810 0.0e+00 1906.0 1998 52.4
TAR376G1212 Trochodendron aralioides HOM05D004110 ORTHO05D004810 0.0e+00 1904.4 1991 52.3
Actinidia29167 Actinidia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1903.6 1981 51.8
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1901.7 1980 53.1
Lalb_Chr01g0001341 Lupinus albus HOM05D004110 ORTHO05D004810 0.0e+00 1858.2 1972 50.6
Psat7g138160 Pisum sativum HOM05D004110 ORTHO05D004810 0.0e+00 1845.5 1976 50.1
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1843.2 2189 48.2
Glyma.12G024600 Glycine max HOM05D004110 ORTHO05D004810 0.0e+00 1840.5 1986 50.5
Phvul.011G026800 Phaseolus vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1823.1 1978 50.0
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 0.0e+00 1823.1 1979 50.7
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 0.0e+00 1823.1 2002 50.3
Medtr4g075330 Medicago truncatula HOM05D004110 ORTHO05D004810 0.0e+00 1821.6 1982 50.1
Gohir.A12G039200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 1815.8 1792 54.2
Lj3g0009405 Lotus japonicus HOM05D004110 ORTHO05D004810 0.0e+00 1801.9 1986 50.2
Lj5C184G3 Lonicera japonica HOM05D004110 ORTHO05D004810 0.0e+00 1799.6 2000 49.9
Ca_30033_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 1779.6 2053 48.1
arahy.Tifrunner.gnm1.ann1.6KB8MN Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 1765.0 1975 49.0
Sed0006799 Sechium edule HOM05D004110 ORTHO05D004810 0.0e+00 1757.3 1977 49.5
CsaV3_2G015750 Cucumis sativus L. HOM05D004110 ORTHO05D004810 0.0e+00 1756.1 1986 49.1
DCAR_022780 Daucus carota HOM05D004110 ORTHO05D004810 0.0e+00 1753.4 1977 48.5
Ca_19005_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 1744.6 2069 47.3
arahy.Tifrunner.gnm1.ann1.5454UR Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 1741.1 1975 48.8
PSO541G0713 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1730.7 1994 48.7
PSO675G3689 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1718.0 1994 48.3
Cc02_g16480 Coffea canephora HOM05D004110 ORTHO05D004810 0.0e+00 1710.7 2044 47.0
Migut.B00121 Erythranthe guttata HOM05D004110 ORTHO05D004810 0.0e+00 1710.7 1974 47.6
MSTRG.20018 Avicennia marina HOM05D004110 ORTHO05D004810 0.0e+00 1682.5 1982 47.0
TPR.G17192 Trifolium pratense HOM05D004110 ORTHO05D004810 0.0e+00 1667.1 1975 47.3
Sopen11g016530 Solanum pennellii HOM05D004110 ORTHO05D004810 0.0e+00 1666.7 1986 46.5
Sc18g0006650 Simmondsia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1664.8 1983 47.3
ECA234G0434 Erigeron canadensis HOM05D004110 ORTHO05D004810 0.0e+00 1663.3 1973 47.0
HanXRQChr10g0299011 Helianthus annuus HOM05D004110 ORTHO05D004810 0.0e+00 1659.8 1973 48.0
Aqoxy2G01068 Aquilegia oxysepala HOM05D004110 ORTHO05D004810 0.0e+00 1651.3 2010 46.9
EL10Ac9g21435 Beta vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1640.2 2093 44.9
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 0.0e+00 1631.3 2021 46.1
Ah.01g022610 Amaranthus hybridus HOM05D004110 ORTHO05D004810 0.0e+00 1619.0 1976 46.0
Nitab4.5_0007580g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 0.0e+00 1607.0 2174 43.1
Hund00042 Selenicereus undatus HOM05D004110 ORTHO05D004810 0.0e+00 1586.6 1952 45.4
AUR62013086 Chenopodium quinoa HOM05D004110 ORTHO05D004810 0.0e+00 1579.7 2014 44.6
Lsat_1_v5_gn_4_74700 Lactuca sativa HOM05D004110 ORTHO05D004810 0.0e+00 1563.1 1972 45.9
Eucgr.I01378 Eucalyptus grandis HOM05D004110 ORTHO05D004810 0.0e+00 1559.3 1731 49.5
SGA_v2.0_scaffold58G20427 Striga asiatica HOM05D004110 ORTHO05D004810 0.0e+00 1543.9 1979 44.3
Solyc11g039880.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 0.0e+00 1531.5 1833 46.6
Nn5g29099 Nelumbo nucifera HOM05D004110 ORTHO05D004810 0.0e+00 1471.4 1990 43.5
ATR0810G267 Amborella trichopoda HOM05D004110 ORTHO05D004810 0.0e+00 1469.1 2001 42.7
Cpa.g.sc37.187 Carica papaya HOM05D004110 ORTHO05D004810 0.0e+00 1391.7 1500 51.4
Peaxi162Scf00684g00023 Petunia axillaris HOM05D004110 ORTHO05D004810 0.0e+00 1335.5 1958 41.4
Duzib248G0147 Durio zibethinus HOM05D004110 ORTHO05D004810 0.0e+00 1295.0 1397 51.6
CARHR294450 Cardamine hirsuta HOM05D004110 ORTHO05D004810 0.0e+00 1219.9 736 85.1
Haze_02193 Corylus avellana HOM05D004110 ORTHO05D004810 0.0e+00 1153.3 1387 49.3
Oeu014463.1 Olea europaea HOM05D004110 ORTHO05D004810 0.0e+00 1139.4 2329 35.3
CSS0024884 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 0.0e+00 1113.2 1257 50.8
vmacro17377 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 0.0e+00 1094.7 1398 45.1
unitig_21.g20818 Utricularia gibba HOM05D004110 ORTHO05D004810 8.4e-296 1021.5 1993 34.5
Pp3c5_12360 Physcomitrium patens HOM05D004110 ORTHO05D004810 3.9e-277 959.5 2074 31.0
Mapoly0001s0208 Marchantia polymorpha HOM05D004110 ORTHO05D004810 1.9e-260 904.0 2076 31.1
AUR62010090 Chenopodium quinoa HOM05D004110 ORTHO05D004810 2.4e-258 897.1 1232 42.0
AagrBONN_evm.TU.Sc2ySwM_344.4164 Anthoceros agrestis HOM05D004110 ORTHO05D004810 1.7e-243 847.8 2090 29.8
CAN.G603.1 Capsicum annuum HOM05D004110 ORTHO05D004810 3.0e-237 827.0 1217 40.8
Nitab4.5_0006590g0020 Nicotiana tabacum HOM05D004110 ORTHO05D004810 1.8e-234 817.8 783 54.5
Nitab4.5_0006590g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 5.2e-229 799.7 1088 42.5
MELO3C020789.2 Cucumis melo HOM05D004110 ORTHO05D004810 2.0e-220 771.2 1020 44.7
MD10G1119400 Malus domestica HOM05D004110 ORTHO05D004810 2.0e-217 761.1 717 57.2
vmacro17378 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 8.0e-206 722.6 589 60.8
Haze_02194 Corylus avellana HOM05D004110 ORTHO05D004810 1.2e-204 718.8 666 57.4
ClCG02G011600 Citrullus lanatus HOM05D004110 ORTHO05D004810 1.4e-186 658.7 742 48.5
SEGI_22139 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 1.6e-182 645.2 1476 30.6
Zm00001eb026650 Zea mays HOM05D004110 ORTHO05D004810 1.6e-182 645.2 1340 34.2
HPP92_005008 Vanilla planifolia HOM05D004110 ORTHO05D004810 1.7e-176 625.2 860 41.7
Cpa.g.sc37.188 Carica papaya HOM05D004110 ORTHO05D004810 1.9e-170 605.1 475 64.6
CDE05G0764 Ceratophyllum demersum HOM05D004110 ORTHO05D004810 6.7e-160 570.1 716 43.4
CAN.G603.2 Capsicum annuum HOM05D004110 ORTHO05D004810 7.4e-159 566.6 738 44.3
CBR_g5647 Chara braunii HOM05D004110 ORTHO05D004810 4.1e-141 507.7 2199 23.8
FAN27G1057 Fragaria x ananassa HOM05D004110 ORTHO05D004810 9.0e-141 506.5 526 52.9
Potri.004G168700 Populus trichocarpa HOM05D004110 ORTHO05D004810 2.6e-132 478.4 798 41.1
COL.COLO4_17262 Corchorus olitorius HOM05D004110 ORTHO05D004810 4.5e-116 424.5 767 35.3
Glyma.11G098600 Glycine max HOM05D004110 ORTHO05D004810 7.7e-116 423.7 398 56.0
SHI05691 Sapria himalayana HOM05D004110 ORTHO05D004810 2.3e-112 412.1 497 45.5
Glyma.11G098551 Glycine max HOM05D004110 ORTHO05D004810 4.0e-112 411.4 334 59.9
MD10G1119600 Malus domestica HOM05D004110 ORTHO05D004810 5.2e-112 411.0 386 56.5
SHI05701 Sapria himalayana HOM05D004110 ORTHO05D004810 1.2e-103 383.3 605 39.5
SEGI_22669 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 5.0e-99 367.9 746 33.9
Os10g0154600 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 3.6e-89 335.1 650 35.4
HPP92_005015 Vanilla planifolia HOM05D004110 ORTHO05D004810 5.6e-82 311.2 635 35.0
ClCG02G011580 Citrullus lanatus HOM05D004110 ORTHO05D004810 4.6e-76 291.6 228 63.2
CSS0003289 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 1.5e-66 260.0 201 63.2
SMO171G0108 Selaginella moellendorffii HOM05D004110 ORTHO05D004810 1.6e-57 229.9 478 30.1
Duzib248G1214 Durio zibethinus HOM05D004110 ORTHO05D004810 4.6e-52 211.8 165 62.4
MD10G1119500 Malus domestica HOM05D004110 ORTHO05D004810 2.2e-46 193.0 208 50.5
FAN27G2584 Fragaria x ananassa HOM05D004110 ORTHO05D004810 3.0e-43 182.6 132 67.4
COL.COLO4_17261 Corchorus olitorius HOM05D004110 ORTHO05D004810 2.6e-39 169.5 352 36.4
COL.COLO4_17260 Corchorus olitorius HOM05D004110 ORTHO05D004810 2.1e-36 159.8 581 26.2
Solyc11g039890.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 1.6e-33 150.2 145 48.3
CSS0015162 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 3.7e-33 149.1 100 70.0
MD10G1119100 Malus domestica HOM05D004110 ORTHO05D004810 7.2e-29 134.8 133 52.6
SEGI_07180 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 1.3e-27 130.6 392 28.6
BcaB03g12223 Brassica carinata HOM05D004110 ORTHO05D004810 3.0e-27 129.4 111 64.9
CSS0008861 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 4.8e-25 122.1 122 49.2
ClCG02G011590 Citrullus lanatus HOM05D004110 ORTHO05D004810 2.4e-24 119.8 92 58.7
MCO14G095 Micromonas commoda HOM05D004110 ORTHO05D004810 3.4e-23 115.9 521 23.8
CARHR053140 Cardamine hirsuta HOM05D004110 ORTHO05D004810 1.1e-21 110.9 73 83.6
ClCG02G011550 Citrullus lanatus HOM05D004110 ORTHO05D004810 1.9e-21 110.2 149 46.3
Gohir.A12G039250 Gossypium hirsutum HOM05D004110 ORTHO05D004810 3.2e-21 109.4 99 54.5
Hma1.2p1_0032F.1_g019640 Hydrangea macrophylla HOM05D004110 ORTHO05D004810 1.6e-20 107.1 93 57.0
BolC8t52466H Brassica oleracea HOM05D004110 ORTHO05D004810 4.6e-20 105.5 86 64.0
CARHR053160 Cardamine hirsuta HOM05D004110 ORTHO05D004810 1.0e-19 104.4 110 56.4
BcaC07g36804 Brassica carinata HOM05D004110 ORTHO05D021644 1.1e-18 100.9 77 75.3
Lj3g0004699 Lotus japonicus HOM05D004110 ORTHO05D004810 2.0e-18 100.1 186 34.9
HPP92_005007 Vanilla planifolia HOM05D004110 ORTHO05D004810 2.0e-18 100.1 694 21.9
Os10g0154566 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 4.4e-18 99.0 102 49.0
arahy.Tifrunner.gnm1.ann1.G8A5JV Arachis hypogaea HOM05D004110 ORTHO05D004810 7.4e-18 98.2 89 53.9
Zm00001eb026660 Zea mays HOM05D004110 ORTHO05D004810 7.4e-18 98.2 123 40.7
SEGI_16576 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 1.7e-17 97.1 224 30.4
SHI05700 Sapria himalayana HOM05D004110 ORTHO05D004810 1.1e-16 94.4 122 39.3
AUR62040642 Chenopodium quinoa HOM05D004110 ORTHO05D004810 3.1e-16 92.8 152 36.8
TPR.G40846 Trifolium pratense HOM05D004110 ORTHO05D004810 3.1e-16 92.8 109 45.9
C04p11270 Brassica napus HOM05D004110 ORTHO05D021644 7.7e-15 88.2 48 95.8
BolC4t22766H Brassica oleracea HOM05D004110 ORTHO05D021644 7.7e-15 88.2 48 95.8
AagrBONN_evm.TU.Sc2ySwM_344.4149 Anthoceros agrestis HOM05D004110 ORTHO05D004810 2.2e-14 86.7 152 32.9
C08p02530 Brassica napus HOM05D004110 ORTHO05D021644 2.2e-14 86.7 49 91.8
CSS0014003 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 1.9e-13 83.6 90 47.8
Ciclev10029869m.g Citrus clementina HOM05D004110 ORTHO05D004810 2.1e-12 80.1 56 64.3
Psat1g093160 Pisum sativum HOM05D004110 ORTHO05D004810 2.7e-12 79.7 71 54.9
SHI05692 Sapria himalayana HOM05D004110 ORTHO05D004810 6.1e-12 78.6 69 55.1
HanXRQChr09g0252681 Helianthus annuus HOM05D004110 ORTHO05D004810 1.1e-10 74.3 51 58.8
SHI05699 Sapria himalayana HOM05D004110 ORTHO05D004810 2.0e-10 73.6 158 30.4
PGSC0003DMG400022052 Solanum tuberosum HOM05D004110 ORTHO05D004810 9.7e-10 71.2 60 53.3
FAN24G1876 Fragaria x ananassa HOM05D000827 ORTHO05D001318 2.2e-09 70.1 59 59.3
AT4G10843 Arabidopsis thaliana HOM05D004110 ORTHO05D038727 8.2e-09 68.2 95 46.3
Duzib248G0615 Durio zibethinus HOM05D004110 ORTHO05D004810 4.1e-08 65.9 173 31.8
SHI05698 Sapria himalayana HOM05D004110 ORTHO05D004810 7.0e-08 65.1 82 41.5
A08p24030 Brassica napus HOM05D004110 ORTHO05D004810 1.2e-07 64.3 35 85.7
Psat5g216640 Pisum sativum HOM05D000564 ORTHO05D015028 1.2e-07 64.3 154 31.2
CBR_g66117 Chara braunii HOM05D000019 ORTHO05D001702 1.6e-07 63.9 110 37.3
VMungo0464G1786 Vigna mungo HOM05D004110 ORTHO05D004810 4.5e-07 62.4 56 55.4
Psat6g113120 Pisum sativum HOM05D020801 ORTHO05D004810 1.0e-06 61.2 73 43.8
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 6.5e-06 58.5 91 40.7


User provided reference genes

Program Settings