Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p48190 Brassica napus HOM05D003792 ORTHO05D003195 4.4e-130 468.0 241 100.0
BraA06t27688Z Brassica rapa HOM05D003792 ORTHO05D003195 4.4e-122 441.4 228 99.6
C04p25040 Brassica napus HOM05D003792 ORTHO05D003195 1.4e-115 419.9 241 93.4
BolC4t24005H Brassica oleracea HOM05D003792 ORTHO05D003195 1.4e-115 419.9 241 93.4
BcaC02g10794 Brassica carinata HOM05D003792 ORTHO05D003195 5.2e-115 417.9 241 92.9
Sp2g07640 Schrenkiella parvula HOM05D003792 ORTHO05D003195 1.7e-94 349.7 252 79.0
SpUn0117_0010 Schrenkiella parvula HOM05D003792 ORTHO05D003195 1.7e-94 349.7 252 79.0
BcaC06g31740 Brassica carinata HOM05D003792 ORTHO05D003195 1.4e-91 340.1 243 79.8
Thhalv10003264m.g Eutrema salsugineum HOM05D003792 ORTHO05D003195 1.2e-90 337.0 249 77.5
BolC9t55450H Brassica oleracea HOM05D003792 ORTHO05D003195 3.7e-81 305.4 240 72.1
Aa31LG9G12960 Aethionema arabicum HOM05D003792 ORTHO05D003195 2.1e-79 299.7 255 70.6
AT5G42900 Arabidopsis thaliana HOM05D003792 ORTHO05D003195 4.3e-77 292.0 250 71.2
A09p20080 Brassica napus HOM05D003792 ORTHO05D003195 7.3e-77 291.2 241 71.0
BraA09t37621Z Brassica rapa HOM05D003792 ORTHO05D003195 7.3e-77 291.2 241 71.0
BcaB07g31033 Brassica carinata HOM05D003792 ORTHO05D003195 3.1e-75 285.8 240 69.2
BcaC04g21959 Brassica carinata HOM05D003792 ORTHO05D003195 2.9e-73 279.3 240 69.2
AL8G18050 Arabidopsis lyrata HOM05D003792 ORTHO05D003195 4.9e-73 278.5 254 67.3
Carub.0008s0601 Capsella rubella HOM05D003792 ORTHO05D003195 6.0e-71 271.6 246 67.1
C09p25480 Brassica napus HOM05D003792 ORTHO05D003195 8.4e-65 251.1 221 67.9
CARHR181240 Cardamine hirsuta HOM05D003792 ORTHO05D003195 1.1e-64 250.8 246 65.9
THA.LOC104812575 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 1.4e-48 197.2 260 53.5
THA.LOC104814167 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 6.1e-39 165.2 260 50.0
THA.LOC104822850 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 1.9e-37 160.2 254 47.6
GSVIVG01009490001 Vitis vinifera HOM05D003792 ORTHO05D003195 3.0e-30 136.3 230 43.5
TAR381G1051 Trochodendron aralioides HOM05D003792 ORTHO05D003195 9.1e-27 124.8 218 41.7
RcHm_v2.0_Chr6g0307971 Rosa chinensis HOM05D003792 ORTHO05D003195 3.4e-26 122.9 215 39.5
PGR031G0673 Punica granatum HOM05D003792 ORTHO05D003195 5.9e-26 122.1 232 40.1
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 7.7e-26 121.7 232 41.4
TWI36G0999 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 5.0e-25 119.0 234 40.6
Eucgr.F00223 Eucalyptus grandis HOM05D003792 ORTHO05D003195 1.1e-24 117.9 234 37.6
FAN15G1261 Fragaria x ananassa HOM05D003792 ORTHO05D003195 2.5e-24 116.7 217 39.2
Actinidia23277 Actinidia chinensis HOM05D003792 ORTHO05D003195 3.2e-24 116.3 256 36.7
FvH4_2g34400 Fragaria vesca HOM05D003792 ORTHO05D003195 3.2e-24 116.3 217 39.2
MD15G1082300 Malus domestica HOM05D003792 ORTHO05D003195 2.7e-23 113.2 221 38.0
Potri.014G029000 Populus trichocarpa HOM05D003792 ORTHO05D003195 7.9e-23 111.7 250 37.6
TWI36G1706 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 7.9e-23 111.7 239 40.6
Actinidia22631 Actinidia chinensis HOM05D003792 ORTHO05D003195 1.4e-22 110.9 239 36.4
Dinv35957 Davidia involucrata HOM05D003792 ORTHO05D003195 1.8e-22 110.5 241 38.6
MD08G1101100 Malus domestica HOM05D003792 ORTHO05D003195 3.0e-22 109.8 214 37.9
Sabra14G0019900 Salix brachista HOM05D003792 ORTHO05D003195 3.0e-22 109.8 264 35.6
Cfa018558 Carpinus fangiana HOM05D000207 ORTHO05D000606 3.9e-22 109.4 225 37.8
Gorai.010G020000 Gossypium raimondii HOM05D003792 ORTHO05D003195 6.7e-22 108.6 213 39.4
Prupe.1G435100 Prunus persica HOM05D003792 ORTHO05D003195 6.7e-22 108.6 210 39.0
Rhsim06G0050200 Rhododendron simsii HOM05D003792 ORTHO05D003195 6.7e-22 108.6 235 36.2
Gohir.A06G018700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 8.8e-22 108.2 218 39.0
Duzib116G0066 Durio zibethinus HOM05D003792 ORTHO05D003195 1.5e-21 107.5 214 37.9
Dinv42162 Davidia involucrata HOM05D003792 ORTHO05D003195 2.0e-21 107.1 239 36.0
Potri.002G125900 Populus trichocarpa HOM05D003792 ORTHO05D003195 2.6e-21 106.7 260 36.5
TAR376G0615 Trochodendron aralioides HOM05D003792 ORTHO05D003195 3.3e-21 106.3 213 39.9
Manes.18G037600 Manihot esculenta HOM05D003792 ORTHO05D003195 4.4e-21 105.9 233 36.9
Gohir.D06G017100 Gossypium hirsutum HOM05D003792 ORTHO05D003195 5.7e-21 105.5 213 39.0
MSTRG.24332 Avicennia marina HOM05D003792 ORTHO05D003195 9.7e-21 104.8 229 39.3
QL02p004753 Quercus lobata HOM05D003792 ORTHO05D003195 1.3e-20 104.4 246 36.6
Nn5g30305 Nelumbo nucifera HOM05D003792 ORTHO05D003195 3.7e-20 102.8 204 37.7
TAR628G0921 Trochodendron aralioides HOM05D003792 ORTHO05D003195 3.7e-20 102.8 259 35.1
CSS0021091 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 4.8e-20 102.4 236 34.3
vmacro21518 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 4.8e-20 102.4 238 36.6
DCAR_019451 Daucus carota HOM05D003792 ORTHO05D003195 1.1e-19 101.3 234 35.0
CiPaw.16G043500 Carya illinoinensis HOM05D003792 ORTHO05D003195 1.4e-19 100.9 228 36.0
CiPaw.15G055900 Carya illinoinensis HOM05D003792 ORTHO05D003195 3.1e-19 99.8 237 37.1
COL.COLO4_26514 Corchorus olitorius HOM05D003792 ORTHO05D003195 5.3e-19 99.0 245 36.7
Aqoxy6G01313 Aquilegia oxysepala HOM05D003792 ORTHO05D003195 9.1e-19 98.2 212 37.7
Thecc.08G006700 Theobroma cacao HOM05D003792 ORTHO05D003195 9.1e-19 98.2 171 38.6
Haze_10092 Corylus avellana HOM05D003792 ORTHO05D003195 1.2e-18 97.8 208 38.0
VMungo0647G0635 Vigna mungo HOM05D003792 ORTHO05D003195 2.6e-18 96.7 202 38.1
Glyma.17G242100 Glycine max HOM05D003792 ORTHO05D003195 4.5e-18 95.9 198 38.4
Gohir.D01G108300 Gossypium hirsutum HOM05D003792 ORTHO05D003195 4.5e-18 95.9 198 37.4
Cpa.g.sc49.18 Carica papaya HOM05D003792 ORTHO05D003195 5.9e-18 95.5 205 39.5
Duzib093G2220 Durio zibethinus HOM05D003792 ORTHO05D003195 1.0e-17 94.7 211 37.4
Gorai.002G132500 Gossypium raimondii HOM05D003792 ORTHO05D003195 1.0e-17 94.7 198 35.9
Nitab4.5_0000287g0270 Nicotiana tabacum HOM05D003792 ORTHO05D003195 1.0e-17 94.7 203 38.4
Solyc04g078880.3 Solanum lycopersicum HOM05D003792 ORTHO05D003195 1.0e-17 94.7 205 36.1
Nitab4.5_0002760g0070 Nicotiana tabacum HOM05D003792 ORTHO05D003195 1.3e-17 94.4 201 38.8
GSVIVG01024176001 Vitis vinifera HOM05D003792 ORTHO05D003195 1.3e-17 94.4 212 38.2
GSVIVG01031734001 Vitis vinifera HOM05D003792 ORTHO05D003195 2.2e-17 93.6 236 35.6
CSS0036112 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 2.9e-17 93.2 201 34.3
Dinv15716 Davidia involucrata HOM05D003792 ORTHO05D003195 2.9e-17 93.2 229 32.8
PGSC0003DMG402007970 Solanum tuberosum HOM05D003792 ORTHO05D003195 3.8e-17 92.8 201 36.8
Gohir.A01G120000 Gossypium hirsutum HOM05D003792 ORTHO05D003195 5.0e-17 92.4 201 37.3
Oeu012963.1 Olea europaea HOM05D003792 ORTHO05D003195 5.0e-17 92.4 229 34.1
PSO210G6487 Papaver somniferum HOM05D003792 ORTHO05D003195 5.0e-17 92.4 213 36.6
CANSAT25G3506 Cannabis sativa HOM05D003792 ORTHO05D003195 6.5e-17 92.0 210 34.8
Phvul.001G022200 Phaseolus vulgaris HOM05D003792 ORTHO05D003195 6.5e-17 92.0 192 37.5
CSS0015140 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 8.5e-17 91.7 204 36.3
CANSAT25G2784 Cannabis sativa HOM05D003792 ORTHO05D003195 8.5e-17 91.7 210 34.8
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 1.1e-16 91.3 225 34.7
Sopen04g032480 Solanum pennellii HOM05D003792 ORTHO05D003195 1.1e-16 91.3 205 35.6
Ciclev10002531m.g Citrus clementina HOM05D003792 ORTHO05D003195 1.5e-16 90.9 211 34.6
Lj5g0016368 Lotus japonicus HOM05D003792 ORTHO05D003195 2.5e-16 90.1 206 35.4
Glyma.14G083000 Glycine max HOM05D003792 ORTHO05D003195 3.2e-16 89.7 217 36.4
Sc02g0007160 Simmondsia chinensis HOM05D003792 ORTHO05D003195 3.2e-16 89.7 229 35.8
Medtr1g019360 Medicago truncatula HOM05D003792 ORTHO05D003195 4.2e-16 89.4 185 35.1
Migut.N02709 Erythranthe guttata HOM05D003792 ORTHO05D003195 5.5e-16 89.0 225 34.2
Peaxi162Scf00252g00410 Petunia axillaris HOM05D003792 ORTHO05D003195 7.2e-16 88.6 200 35.5
Actinidia00436 Actinidia chinensis HOM05D003792 ORTHO05D003195 1.2e-15 87.8 223 33.6
Lsat_1_v5_gn_4_125741 Lactuca sativa HOM05D003792 ORTHO05D003195 1.2e-15 87.8 229 33.2
QL11p035325 Quercus lobata HOM05D003792 ORTHO05D003195 1.2e-15 87.8 243 34.2
Haze_17521 Corylus avellana HOM05D000207 ORTHO05D000606 1.6e-15 87.4 237 32.1
TPR.G3791 Trifolium pratense HOM05D003792 ORTHO05D003195 3.6e-15 86.3 175 38.3
Cc10_g04110 Coffea canephora HOM05D003792 ORTHO05D003195 4.7e-15 85.9 223 31.4
arahy.Tifrunner.gnm1.ann1.ND8QY1 Arachis hypogaea HOM05D003792 ORTHO05D003195 1.0e-14 84.7 214 34.1
arahy.Tifrunner.gnm1.ann1.V1SQNE Arachis hypogaea HOM05D003792 ORTHO05D003195 1.0e-14 84.7 214 34.1
Gorai.009G212200 Gossypium raimondii HOM05D003792 ORTHO05D003195 1.0e-14 84.7 206 35.4
Sabra02G0098600 Salix brachista HOM05D000207 ORTHO05D003195 1.8e-14 84.0 274 30.3
Hund23000 Selenicereus undatus HOM05D003792 ORTHO05D003195 3.0e-14 83.2 186 35.5
CDE04G2954 Ceratophyllum demersum HOM05D000925 ORTHO05D002746 4.0e-14 82.8 209 35.4
PGR083G2840 Punica granatum HOM05D003792 ORTHO05D003195 8.8e-14 81.6 172 36.0
Gohir.D05G205900 Gossypium hirsutum HOM05D003792 ORTHO05D003195 2.0e-13 80.5 183 34.4
CsaV3_4G034340 Cucumis sativus L. HOM05D003792 ORTHO05D003195 2.6e-13 80.1 188 33.5
MELO3C016754.2 Cucumis melo HOM05D003792 ORTHO05D003195 7.5e-13 78.6 185 36.2
Lalb_Chr14g0368651 Lupinus albus HOM05D003792 ORTHO05D003195 9.7e-13 78.2 169 36.1
Psat6g012520 Pisum sativum HOM05D003792 ORTHO05D003195 1.7e-12 77.4 118 39.0
Rhsim07G0228200 Rhododendron simsii HOM05D003792 ORTHO05D003195 3.7e-12 76.3 272 27.6
SalBow7G2289 Salvia bowleyana HOM05D003792 ORTHO05D003195 8.2e-12 75.1 133 37.6
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 8.2e-12 75.1 232 34.1
ECA246G0047 Erigeron canadensis HOM05D003792 ORTHO05D003195 1.1e-11 74.7 210 31.0
Lsat_1_v5_gn_6_111920 Lactuca sativa HOM05D003792 ORTHO05D003195 1.4e-11 74.3 135 37.0
MBI03_g13463_MAGBIO Magnolia biondii HOM05D003792 ORTHO05D003195 1.8e-11 73.9 187 33.7
Gohir.A05G202700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 3.1e-11 73.2 199 33.7
Lalb_Chr22g0355111 Lupinus albus HOM05D003792 ORTHO05D003195 3.1e-11 73.2 180 32.2
Rhsim11G0165200 Rhododendron simsii HOM05D003792 ORTHO05D003195 5.3e-11 72.4 239 30.5
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 9.1e-11 71.6 218 31.2
ECA232G3551 Erigeron canadensis HOM05D003792 ORTHO05D003195 9.1e-11 71.6 233 33.5
CiPaw.05G007500 Carya illinoinensis HOM05D003792 ORTHO05D003195 1.2e-10 71.2 154 35.7
EL10As7g23733 Beta vulgaris HOM05D003792 ORTHO05D003195 1.6e-10 70.9 121 38.0
PGR042G0828 Punica granatum HOM05D003792 ORTHO05D003195 1.6e-10 70.9 223 31.8
vmacro02043 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 2.0e-10 70.5 156 34.6
HanXRQChr05g0150801 Helianthus annuus HOM05D003792 ORTHO05D003195 3.5e-10 69.7 227 31.3
Sed0003020 Sechium edule HOM05D003792 ORTHO05D003195 4.5e-10 69.3 215 28.8
Oeu025580.1 Olea europaea HOM05D003792 ORTHO05D003195 5.9e-10 68.9 230 29.6
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 7.7e-10 68.6 219 31.1
Aqoxy5G01231 Aquilegia oxysepala HOM05D003792 ORTHO05D003195 7.7e-10 68.6 224 29.9
Cpa.g.sc62.6 Carica papaya HOM05D003792 ORTHO05D003195 1.7e-09 67.4 244 29.5
Duzib248G0608 Durio zibethinus HOM05D003792 ORTHO05D003195 1.7e-09 67.4 261 31.4
MD05G1081700 Malus domestica HOM05D003792 ORTHO05D003195 1.7e-09 67.4 244 33.6
HanXRQChr09g0267581 Helianthus annuus HOM05D003792 ORTHO05D003195 3.8e-09 66.2 201 31.8
TPR.G12693 Trifolium pratense HOM05D003792 ORTHO05D003195 3.8e-09 66.2 224 30.4
HanXRQChr14g0439641 Helianthus annuus HOM05D003792 ORTHO05D003195 6.5e-09 65.5 233 30.9
Zm00001eb006310 Zea mays HOM05D003792 ORTHO05D003195 8.5e-09 65.1 188 33.0
Gorai.008G024800 Gossypium raimondii HOM05D003792 ORTHO05D003195 1.1e-08 64.7 206 31.1
Manes.10G080100 Manihot esculenta HOM05D003792 ORTHO05D003195 1.5e-08 64.3 138 37.0
SGA_v2.0_scaffold28G11774 Striga asiatica HOM05D000207 ORTHO05D000606 1.9e-08 63.9 215 31.6
Ah.11g043080 Amaranthus hybridus HOM05D003792 ORTHO05D003195 2.5e-08 63.5 140 35.7
CDE08G1351 Ceratophyllum demersum HOM05D003792 ORTHO05D003195 2.5e-08 63.5 105 41.0
Thecc.02G101400 Theobroma cacao HOM05D003792 ORTHO05D003195 2.5e-08 63.5 251 28.3
Os03g0184100 Oryza sativa ssp. japonica HOM05D003792 ORTHO05D003195 3.2e-08 63.2 201 31.3
Lj5C209G18 Lonicera japonica HOM05D003792 ORTHO05D003195 5.5e-08 62.4 146 32.2
SGA_v2.0_scaffold14G07003 Striga asiatica HOM05D000207 ORTHO05D000606 5.5e-08 62.4 85 44.7
Peaxi162Scf00016g01956 Petunia axillaris HOM05D011234 ORTHO05D003195 9.4e-08 61.6 238 28.2
Gohir.D12G024500 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.2e-07 61.2 204 29.9
Migut.C00575 Erythranthe guttata HOM05D003792 ORTHO05D003195 2.1e-07 60.5 224 29.5
Cc02_g18840 Coffea canephora HOM05D011234 ORTHO05D003195 2.7e-07 60.1 241 29.9
MSTRG.25091 Avicennia marina HOM05D003792 ORTHO05D003195 3.6e-07 59.7 221 27.1
AUR62042730 Chenopodium quinoa HOM05D043499 ORTHO05D003195 4.7e-07 59.3 207 30.4
Oeu049982.1 Olea europaea HOM05D003792 ORTHO05D003195 4.7e-07 59.3 183 27.3
Gohir.A12G023800 Gossypium hirsutum HOM05D003792 ORTHO05D003195 6.1e-07 58.9 200 28.5
Prupe.8G126300 Prunus persica HOM05D003792 ORTHO05D003195 6.1e-07 58.9 150 32.0
Glyma.07G213000 Glycine max HOM05D003792 ORTHO05D003195 8.0e-07 58.5 223 29.6
Atru.chr5.2692 Acer truncatum HOM05D003792 ORTHO05D003195 2.3e-06 57.0 233 29.6
THA.LOC104819577 Tarenaya hassleriana HOM05D009953 ORTHO05D003195 2.3e-06 57.0 231 30.7
PSO170G6463 Papaver somniferum HOM05D003792 ORTHO05D003195 3.0e-06 56.6 210 31.0
Potri.009G101400 Populus trichocarpa HOM05D003792 ORTHO05D003195 3.0e-06 56.6 212 31.6
SGA_v2.0_scaffold32G13060 Striga asiatica HOM05D003792 ORTHO05D003195 3.0e-06 56.6 237 29.5
Lj4g0023306 Lotus japonicus HOM05D003792 ORTHO05D003195 6.8e-06 55.5 239 27.2
unitig_8.g3371 Utricularia gibba HOM05D061388 ORTHO05D003195 8.8e-06 55.1 48 58.3
vmacro04447 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 8.8e-06 55.1 51 54.9


User provided reference genes

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