Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p48170 Brassica napus HOM05D004452 ORTHO05D005358 0.0e+00 1557.3 813 100.0
BraA06t27686Z Brassica rapa HOM05D004452 ORTHO05D005358 0.0e+00 1542.7 813 99.0
BcaC02g10792 Brassica carinata HOM05D004452 ORTHO05D005358 0.0e+00 1454.9 824 94.4
C04p25060 Brassica napus HOM05D004452 ORTHO05D005358 0.0e+00 1454.9 824 94.4
BolC4t24007H Brassica oleracea HOM05D004452 ORTHO05D005358 0.0e+00 1454.9 824 94.4
BcaC06g31738 Brassica carinata HOM05D004452 ORTHO05D005358 0.0e+00 1450.6 823 93.7
Sp2g07660 Schrenkiella parvula HOM05D004452 ORTHO05D005358 0.0e+00 1331.6 827 86.6
AT5G42920 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 0.0e+00 1331.2 828 85.7
Carub.0008s0587 Capsella rubella HOM05D004452 ORTHO05D005358 0.0e+00 1310.4 829 84.2
CARHR181170 Cardamine hirsuta HOM05D004452 ORTHO05D005358 0.0e+00 1298.9 828 83.7
Thhalv10003147m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 0.0e+00 1296.6 828 84.4
AL8G17930 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 0.0e+00 1286.9 827 84.0
Aa31LG9G12980 Aethionema arabicum HOM05D004452 ORTHO05D005358 0.0e+00 1195.6 824 78.3
THA.LOC104822853 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 0.0e+00 1137.5 829 74.1
Duzib093G1704 Durio zibethinus HOM05D004452 ORTHO05D005358 1.1e-273 946.8 822 61.8
Thecc.08G005800 Theobroma cacao HOM05D004452 ORTHO05D005358 7.0e-273 944.1 822 61.2
Cfa018088 Carpinus fangiana HOM05D004452 ORTHO05D005358 5.6e-270 934.5 821 61.9
COL.COLO4_26520 Corchorus olitorius HOM05D004452 ORTHO05D005358 4.7e-269 931.4 823 60.1
Manes.18G038000 Manihot esculenta HOM05D004452 ORTHO05D005358 1.8e-268 929.5 818 61.6
Potri.014G028100 Populus trichocarpa HOM05D004452 ORTHO05D005358 9.8e-267 923.7 820 60.2
Sabra14G0019200 Salix brachista HOM05D004452 ORTHO05D005358 1.3e-266 923.3 820 60.0
CiPaw.15G055600 Carya illinoinensis HOM05D004452 ORTHO05D005358 4.9e-266 921.4 826 60.5
TWI36G0852 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 1.4e-265 919.8 823 62.1
Actinidia23285 Actinidia chinensis HOM05D004452 ORTHO05D005358 2.4e-265 919.1 823 61.0
QL02p004676 Quercus lobata HOM05D004452 ORTHO05D005358 9.2e-265 917.1 831 61.7
Gohir.D05G206300 Gossypium hirsutum HOM05D004452 ORTHO05D005358 2.7e-264 915.6 819 60.1
TWI56G0235 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 7.8e-264 914.1 823 61.2
GSVIVG01009484001 Vitis vinifera HOM05D004452 ORTHO05D005358 1.5e-262 909.8 784 62.1
Cpa.g.sc49.27 Carica papaya HOM05D004452 ORTHO05D005358 5.6e-262 907.9 830 61.1
Prupe.1G434400 Prunus persica HOM05D004452 ORTHO05D005358 5.6e-262 907.9 824 60.0
Rhsim06G0050800 Rhododendron simsii HOM05D004452 ORTHO05D005358 7.3e-262 907.5 839 59.5
Lj4A59T44 Lonicera japonica HOM05D004452 ORTHO05D005358 1.2e-261 906.7 794 61.1
Ciclev10000290m.g Citrus clementina HOM05D004452 ORTHO05D005358 2.1e-261 906.0 827 59.7
Gorai.009G212700 Gossypium raimondii HOM05D004452 ORTHO05D005358 2.1e-261 906.0 819 59.8
vmacro21515 Vaccinium macrocarpon HOM05D004452 ORTHO05D005358 8.0e-261 904.0 824 60.0
FAN15G1326 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.1e-260 903.7 824 60.9
MD15G1081700 Malus domestica HOM05D004452 ORTHO05D005358 1.1e-260 903.7 825 59.4
CSS0026728 Camellia sinensis var. sinensis HOM05D004452 ORTHO05D005358 1.2e-259 900.2 825 59.6
TAR381G1434 Trochodendron aralioides HOM05D004452 ORTHO05D005358 1.2e-259 900.2 805 61.0
FvH4_2g34320 Fragaria vesca HOM05D004452 ORTHO05D005358 7.5e-259 897.5 824 60.7
Atru.chr13.704 Acer truncatum HOM05D004452 ORTHO05D005358 6.4e-258 894.4 829 59.1
Dinv39307 Davidia involucrata HOM05D004452 ORTHO05D005358 8.3e-258 894.0 820 61.1
FAN27G2914 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.1e-257 893.6 824 60.9
FAN20G1510 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.4e-257 893.3 824 60.8
Nn5g30286 Nelumbo nucifera HOM05D004452 ORTHO05D005358 2.7e-256 889.0 808 59.0
CANSAT11G1000 Cannabis sativa HOM05D004452 ORTHO05D005358 2.5e-254 882.5 824 60.3
RcHm_v2.0_Chr6g0308041 Rosa chinensis HOM05D004452 ORTHO05D005358 4.3e-254 881.7 823 58.9
ClCG05G019920 Citrullus lanatus HOM05D004452 ORTHO05D005358 3.6e-253 878.6 823 58.3
FAN24G0195 Fragaria x ananassa HOM05D004452 ORTHO05D005358 6.2e-253 877.9 873 57.4
Oeu043579.4 Olea europaea HOM05D004452 ORTHO05D005358 1.5e-251 873.2 809 58.1
MELO3C016756.2 Cucumis melo HOM05D004452 ORTHO05D005358 3.7e-250 868.6 827 57.1
CsaV3_4G034360 Cucumis sativus L. HOM05D004452 ORTHO05D005358 1.4e-249 866.7 828 56.9
PGR031G1897 Punica granatum HOM05D004452 ORTHO05D005358 2.4e-249 865.9 813 60.3
Lalb_Chr11g0062611 Lupinus albus HOM05D004452 ORTHO05D005358 9.2e-249 864.0 827 57.4
PSO170G2588 Papaver somniferum HOM05D004452 ORTHO05D005358 1.6e-248 863.2 797 58.7
Cc10_g04060 Coffea canephora HOM05D004452 ORTHO05D005358 2.7e-248 862.4 822 57.4
PGSC0003DMG400007967 Solanum tuberosum HOM05D004452 ORTHO05D005358 4.6e-248 861.7 805 59.8
CAN.G1030.10 Capsicum annuum HOM05D004452 ORTHO05D005358 7.8e-248 860.9 805 58.4
Eucgr.F02336 Eucalyptus grandis HOM05D004452 ORTHO05D005358 1.0e-247 860.5 824 60.2
Nitab4.5_0002760g0030 Nicotiana tabacum HOM05D004452 ORTHO05D005358 1.3e-247 860.1 809 58.8
Nitab4.5_0000287g0200 Nicotiana tabacum HOM05D004452 ORTHO05D005358 1.7e-247 859.8 809 59.6
PSO210G0441 Papaver somniferum HOM05D004452 ORTHO05D005358 3.9e-247 858.6 797 58.3
DCAR_019448 Daucus carota HOM05D004452 ORTHO05D005358 1.5e-246 856.7 809 59.3
Sc15g0006090 Simmondsia chinensis HOM05D004452 ORTHO05D005358 1.9e-246 856.3 802 57.2
arahy.Tifrunner.gnm1.ann1.UAD7VL Arachis hypogaea HOM05D004452 ORTHO05D005358 4.3e-246 855.1 821 59.2
Glyma.06G040600 Glycine max HOM05D004452 ORTHO05D005358 1.2e-245 853.6 823 57.4
Solyc04g078830.3 Solanum lycopersicum HOM05D004452 ORTHO05D005358 1.2e-245 853.6 805 59.1
Glyma.04G039400 Glycine max HOM05D004452 ORTHO05D005358 2.1e-245 852.8 815 57.8
arahy.Tifrunner.gnm1.ann1.Y5ZCTQ Arachis hypogaea HOM05D004452 ORTHO05D005358 4.7e-245 851.7 821 59.1
MBI06_g02568_MAGBIO Magnolia biondii HOM05D004452 ORTHO05D005358 6.2e-245 851.3 807 57.7
Aqoxy5G01224 Aquilegia oxysepala HOM05D004452 ORTHO05D005358 1.8e-244 849.7 801 56.8
Lj1g0004160 Lotus japonicus HOM05D004452 ORTHO05D005358 1.8e-244 849.7 821 56.2
Sed0009272 Sechium edule HOM05D004452 ORTHO05D005358 2.4e-244 849.4 831 56.8
HanXRQChr02g0039511 Helianthus annuus HOM05D004452 ORTHO05D005358 6.4e-242 841.3 815 58.2
Peaxi162Scf00252g00221 Petunia axillaris HOM05D004452 ORTHO05D005358 7.1e-241 837.8 806 57.8
Phvul.009G065600 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 7.8e-240 834.3 816 57.2
Ca_15944_v3 Cicer arietinum L. HOM05D004452 ORTHO05D005358 1.0e-239 833.9 823 56.0
Medtr3g101790 Medicago truncatula HOM05D004452 ORTHO05D005358 1.0e-239 833.9 824 55.7
ECA247G0253 Erigeron canadensis HOM05D004452 ORTHO05D005358 3.0e-239 832.4 815 58.0
Lsat_1_v5_gn_1_21181 Lactuca sativa HOM05D004452 ORTHO05D005358 3.9e-239 832.0 819 55.7
VMungo1309G1308 Vigna mungo HOM05D004452 ORTHO05D005358 7.3e-238 827.8 824 57.0
MSTRG.24335 Avicennia marina HOM05D004452 ORTHO05D005358 1.6e-237 826.6 800 57.6
TPR.G24198 Trifolium pratense HOM05D004452 ORTHO05D005358 6.2e-237 824.7 835 55.0
Hund23866 Selenicereus undatus HOM05D004452 ORTHO05D005358 1.1e-236 823.9 800 58.0
Gohir.A05G203100 Gossypium hirsutum HOM05D004452 ORTHO05D005358 7.6e-235 817.8 732 60.7
Migut.N02714 Erythranthe guttata HOM05D004452 ORTHO05D005358 1.7e-234 816.6 808 56.3
AUR62041892 Chenopodium quinoa HOM05D004452 ORTHO05D005358 6.4e-234 814.7 792 58.1
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 6.0e-232 808.1 792 56.3
EL10Ac1g01836 Beta vulgaris HOM05D004452 ORTHO05D005358 1.0e-231 807.4 810 57.2
Psat5g042600 Pisum sativum HOM05D004452 ORTHO05D005358 1.1e-230 803.9 808 55.1
Hma1.2p1_2046F.1_g312410 Hydrangea macrophylla HOM05D004452 ORTHO05D005358 1.9e-230 803.1 851 54.1
ATR1126G044 Amborella trichopoda HOM05D004452 ORTHO05D005358 2.1e-224 783.1 807 53.3
CDE08G0013 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 1.8e-212 743.4 802 53.4
SHI08268 Sapria himalayana HOM05D004452 ORTHO05D005358 3.7e-197 692.6 823 50.1
Zm00001eb255990 Zea mays HOM05D004452 ORTHO05D005358 5.5e-193 678.7 788 51.3
Dinv35952 Davidia involucrata HOM05D004452 ORTHO05D005358 2.7e-192 676.4 613 63.3
SalBow8G3632 Salvia bowleyana HOM05D004452 ORTHO05D005358 4.7e-184 649.0 651 53.9
SalBow8G0374 Salvia bowleyana HOM05D004452 ORTHO05D005358 8.0e-184 648.3 651 53.9
THA.LOC104812571 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 4.1e-172 609.4 491 69.9
CDE04G2017 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 1.7e-170 604.0 640 55.8
Mapoly0012s0112 Marchantia polymorpha HOM05D004452 ORTHO05D005358 7.0e-164 582.0 846 43.6
CiPaw.16G042900 Carya illinoinensis HOM05D004452 ORTHO05D005358 9.8e-158 561.6 487 62.0
Lalb_Chr08g0245391 Lupinus albus HOM05D004452 ORTHO05D005358 7.0e-156 555.4 493 62.7
Carub.0001s3568 Capsella rubella HOM05D004452 ORTHO05D005358 9.2e-156 555.1 460 66.5
Thhalv10011479m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 2.0e-155 553.9 459 66.9
Sp1g34090 Schrenkiella parvula HOM05D004452 ORTHO05D005358 4.5e-155 552.7 457 66.1
Sopen04g032430 Solanum pennellii HOM05D004452 ORTHO05D005358 1.3e-154 551.2 572 54.4
AT1G45233 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 2.9e-154 550.1 460 65.2
AL1G52910 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 2.1e-152 543.9 460 64.1
CANSAT11G0118 Cannabis sativa HOM05D004452 ORTHO05D005358 6.4e-149 532.3 482 60.4
BraA10t42942Z Brassica rapa HOM05D004452 ORTHO05D005358 2.0e-147 527.3 457 63.7
Phvul.001G022500 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 1.1e-145 521.5 500 56.2
CARHR036370 Cardamine hirsuta HOM05D004452 ORTHO05D005358 7.3e-145 518.8 456 62.9
A10p06900 Brassica napus HOM05D004452 ORTHO05D005358 1.2e-144 518.1 463 61.3
Sc02g0007190 Simmondsia chinensis HOM05D004452 ORTHO05D005358 2.8e-144 516.9 472 60.4
Aa31sc108G100 Aethionema arabicum HOM05D004452 ORTHO05D005358 3.1e-143 513.5 470 63.8
arahy.Tifrunner.gnm1.ann1.IXK305 Arachis hypogaea HOM05D004452 ORTHO05D005358 4.9e-141 506.1 492 56.3
arahy.Tifrunner.gnm1.ann1.VB8FSW Arachis hypogaea HOM05D004452 ORTHO05D005358 4.9e-141 506.1 492 56.3
Glyma.14G083300 Glycine max HOM05D004452 ORTHO05D005358 8.3e-141 505.4 500 55.8
BolC6t35279H Brassica oleracea HOM05D004452 ORTHO05D005358 5.4e-140 502.7 465 59.1
BcaC08g42910 Brassica carinata HOM05D004452 ORTHO05D005358 7.1e-140 502.3 464 60.1
C06p01470 Brassica napus HOM05D004452 ORTHO05D005358 1.2e-139 501.5 464 60.1
Glyma.17G241800 Glycine max HOM05D004452 ORTHO05D005358 1.6e-139 501.1 499 54.9
Oeu023860.1 Olea europaea HOM05D004452 ORTHO05D005358 4.6e-139 499.6 473 56.9
VMungo0647G1811 Vigna mungo HOM05D004452 ORTHO05D005358 6.6e-138 495.7 499 54.5
HPP92_016717 Vanilla planifolia HOM05D004452 ORTHO05D005358 1.1e-137 495.0 739 41.9
AUR62038817 Chenopodium quinoa HOM05D004452 ORTHO05D005358 7.6e-134 482.3 504 51.4
Os02g0767100 Oryza sativa ssp. japonica HOM05D004452 ORTHO05D005358 1.7e-130 471.1 460 56.3
BcaB07g33871 Brassica carinata HOM05D004452 ORTHO05D005358 3.1e-127 460.3 460 58.0
Sed0026470 Sechium edule HOM05D004452 ORTHO05D005358 7.1e-124 449.1 480 55.2
SMO356G0003 Selaginella moellendorffii HOM05D004452 ORTHO05D005358 1.9e-121 441.0 675 43.3
MSTRG.25087 Avicennia marina HOM05D004452 ORTHO05D005358 2.8e-120 437.2 413 56.4
AagrBONN_evm.TU.Sc2ySwM_228.4151 Anthoceros agrestis HOM05D004452 ORTHO05D005358 3.1e-119 433.7 753 39.2
Pp3c7_25670 Physcomitrium patens HOM05D004452 ORTHO05D005358 4.0e-119 433.3 758 38.5
unitig_749.g13678 Utricularia gibba HOM05D004452 ORTHO05D005358 8.1e-112 409.1 707 38.6
unitig_26.g10021 Utricularia gibba HOM05D002518 ORTHO05D002630 7.6e-110 402.5 469 51.6
Nn7g37344 Nelumbo nucifera HOM05D004452 ORTHO05D005358 7.9e-99 365.9 296 65.9
SEGI_30975 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 1.3e-90 338.6 316 58.9
AagrBONN_evm.TU.Sc2ySwM_117.2784 Anthoceros agrestis HOM05D004452 ORTHO05D005358 9.4e-84 315.8 463 41.5
Potri.002G125300 Populus trichocarpa HOM05D004452 ORTHO05D005358 2.1e-83 314.7 651 35.5
TAR625G1031 Trochodendron aralioides HOM05D004452 ORTHO05D005358 1.8e-74 285.0 278 59.7
Nn3g17073 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.4e-71 275.4 219 68.9
MD08G1099200 Malus domestica HOM05D004452 ORTHO05D005358 2.2e-69 268.1 198 71.7
CBR_g24409 Chara braunii HOM05D004452 ORTHO05D005358 7.2e-60 236.5 359 39.3
MCO13G423 Micromonas commoda HOM05D004452 ORTHO05D005358 3.5e-54 217.6 816 27.1
SEGI_02411 Sequoiadendron giganteum HOM05D004452 ORTHO05D000001 7.7e-46 189.9 361 37.4
MD08G1099500 Malus domestica HOM05D004452 ORTHO05D005358 4.3e-44 184.1 136 65.4
SalBow8G2832 Salvia bowleyana HOM05D004452 ORTHO05D005358 5.6e-44 183.7 153 62.7
SalBow8G5418 Salvia bowleyana HOM05D004452 ORTHO05D005358 5.6e-44 183.7 153 62.7
Dinv35953 Davidia involucrata HOM05D004452 ORTHO05D005358 5.2e-42 177.2 137 61.3
MD08G1099300 Malus domestica HOM05D004452 ORTHO05D005358 1.7e-40 172.2 147 56.5
Cre17.g705550 Chlamydomonas reinhardtii HOM05D004452 ORTHO05D005358 4.1e-39 167.5 451 28.8
Aa31LG7G10550 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.6e-35 155.6 90 80.0
Aa31LG7G10540 Aethionema arabicum HOM05D004452 ORTHO05D005358 2.1e-22 112.1 90 71.1
Nn3g18532 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.4e-18 99.4 156 42.3
Nn3g18530 Nelumbo nucifera HOM05D004452 ORTHO05D005358 4.0e-18 97.8 156 42.3
Actinidia22636 Actinidia chinensis HOM05D004452 ORTHO05D005358 1.4e-15 89.4 70 55.7
CARHR174670 Cardamine hirsuta HOM05D004452 ORTHO05D005358 1.6e-11 75.9 58 63.8
TAR625G1460 Trochodendron aralioides HOM05D004452 ORTHO05D005358 3.1e-10 71.6 96 43.8


User provided reference genes

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