Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p42900 Brassica napus HOM05D003018 ORTHO05D003402 2.3e-111 405.6 211 100.0
A06p42880 Brassica napus HOM05D003018 ORTHO05D003402 2.9e-77 292.4 192 82.8
BraA06t27200Z Brassica rapa HOM05D003018 ORTHO05D003402 2.9e-77 292.4 192 82.8
BolC7t43940H Brassica oleracea HOM05D003018 ORTHO05D003402 4.8e-72 275.0 192 77.6
C07p34140 Brassica napus HOM05D003018 ORTHO05D003402 3.1e-71 272.3 198 75.3
BolC7t43927H Brassica oleracea HOM05D003018 ORTHO05D003402 3.1e-71 272.3 198 75.3
BcaC06g31152 Brassica carinata HOM05D003018 ORTHO05D003402 5.8e-70 268.1 182 78.0
C07p34130 Brassica napus HOM05D010818 ORTHO05D031864 7.9e-59 231.1 153 80.4
BolC7t43928H Brassica oleracea HOM05D010818 ORTHO05D031864 7.9e-59 231.1 153 80.4
BcaC06g31153 Brassica carinata HOM05D010818 ORTHO05D031864 1.3e-56 223.8 147 81.0
C07p34160 Brassica napus HOM05D003018 ORTHO05D003402 1.3e-40 170.6 153 64.1
BolC7t43931H Brassica oleracea HOM05D003018 ORTHO05D003402 1.3e-40 170.6 153 64.1
C07p34110 Brassica napus HOM05D003018 ORTHO05D003402 1.5e-38 163.7 188 54.8
BcaC06g31150 Brassica carinata HOM05D003018 ORTHO05D003402 7.7e-38 161.4 148 62.8
BcaB08g34602 Brassica carinata HOM05D003018 ORTHO05D003402 1.9e-36 156.8 175 58.3
BcaC06g31155 Brassica carinata HOM05D003018 ORTHO05D003402 1.9e-36 156.8 184 54.3
BolC7t43925H Brassica oleracea HOM05D003018 ORTHO05D003402 4.2e-36 155.6 187 53.5
BcaB08g34600 Brassica carinata HOM05D003018 ORTHO05D003402 2.0e-30 136.7 122 63.9
BolC7t43926H Brassica oleracea HOM05D003018 ORTHO05D032594 3.4e-30 136.0 221 42.1
C07p34120 Brassica napus HOM05D003018 ORTHO05D032594 2.9e-29 132.9 237 40.1
BcaC06g31154 Brassica carinata HOM05D003018 ORTHO05D032594 5.0e-29 132.1 188 46.3
Carub.0006s2250 Capsella rubella HOM05D003018 ORTHO05D003402 8.8e-26 121.3 177 44.6
AL6G36250 Arabidopsis lyrata HOM05D003018 ORTHO05D003402 1.1e-25 120.9 224 39.7
Thhalv10004788m.g Eutrema salsugineum HOM05D003018 ORTHO05D003402 1.1e-25 120.9 219 39.3
AT5G24650 Arabidopsis thaliana HOM05D003018 ORTHO05D003402 1.5e-25 120.6 218 39.4
AL5G29400 Arabidopsis lyrata HOM05D003018 ORTHO05D003402 2.6e-25 119.8 221 38.5
A06p35470 Brassica napus HOM05D003018 ORTHO05D003402 3.3e-25 119.4 219 38.8
BraA06t26470Z Brassica rapa HOM05D003018 ORTHO05D003402 3.3e-25 119.4 219 38.8
Sp2g22740 Schrenkiella parvula HOM05D003018 ORTHO05D003402 3.3e-25 119.4 177 43.5
BcaC07g39417 Brassica carinata HOM05D003018 ORTHO05D003402 4.4e-25 119.0 222 36.5
CARHR188810 Cardamine hirsuta HOM05D003018 ORTHO05D003402 7.4e-25 118.2 218 39.4
BcaNung02005 Brassica carinata HOM05D003018 ORTHO05D003402 9.7e-25 117.9 177 42.9
C07p43070 Brassica napus HOM05D003018 ORTHO05D003402 9.7e-25 117.9 177 42.9
BolC7t44834H Brassica oleracea HOM05D003018 ORTHO05D003402 9.7e-25 117.9 177 42.9
Thhalv10010930m.g Eutrema salsugineum HOM05D003018 ORTHO05D003402 1.3e-24 117.5 220 35.9
C07p33980 Brassica napus HOM05D010818 ORTHO05D032436 1.7e-24 117.1 108 62.0
BolC7t43912H Brassica oleracea HOM05D010818 ORTHO05D032436 1.7e-24 117.1 108 62.0
Aa31LG11G3900 Aethionema arabicum HOM05D003018 ORTHO05D003402 2.8e-24 116.3 190 41.6
BcaNung01249 Brassica carinata HOM05D003018 ORTHO05D003402 2.8e-24 116.3 168 42.3
Sp5g12550 Schrenkiella parvula HOM05D003018 ORTHO05D003402 2.8e-24 116.3 223 35.9
AT3G49560 Arabidopsis thaliana HOM05D003018 ORTHO05D003402 3.7e-24 115.9 221 37.1
BcaB01g00697 Brassica carinata HOM05D003018 ORTHO05D003402 4.8e-24 115.5 176 40.9
Carub.0005s1589 Capsella rubella HOM05D003018 ORTHO05D003402 6.3e-24 115.2 177 41.8
THA.LOC104798993 Tarenaya hassleriana HOM05D003018 ORTHO05D003402 1.8e-23 113.6 177 42.4
CARHR158570 Cardamine hirsuta HOM05D003018 ORTHO05D003402 3.1e-23 112.8 220 36.4
C08p24540 Brassica napus HOM05D003018 ORTHO05D003402 4.1e-23 112.5 229 34.5
BolC8t50072H Brassica oleracea HOM05D003018 ORTHO05D003402 4.1e-23 112.5 229 34.5
Aa31LG4G18050 Aethionema arabicum HOM05D003018 ORTHO05D003402 1.5e-22 110.5 177 41.2
A06p18200 Brassica napus HOM05D003018 ORTHO05D003402 1.5e-22 110.5 182 39.0
BraA06t24904Z Brassica rapa HOM05D003018 ORTHO05D003402 1.5e-22 110.5 182 39.0
THA.LOC104814958 Tarenaya hassleriana HOM05D003018 ORTHO05D003402 1.7e-21 107.1 177 40.7
A06p43070 Brassica napus HOM05D010818 ORTHO05D003402 3.8e-21 105.9 104 61.5
BcaB08g34598 Brassica carinata HOM05D003018 ORTHO05D003402 2.5e-20 103.2 86 66.3
BcaB08g34601 Brassica carinata HOM05D003018 ORTHO05D094997 3.2e-20 102.8 134 49.3
A06p42910 Brassica napus HOM05D003018 ORTHO05D003402 9.4e-20 101.3 92 59.8
HanXRQChr10g0283991 Helianthus annuus HOM05D003018 ORTHO05D003402 1.8e-18 97.1 185 39.5
BcaC06g33988 Brassica carinata HOM05D010818 ORTHO05D032436 2.3e-18 96.7 137 47.4
MELO3C005915.2 Cucumis melo HOM05D003018 ORTHO05D003402 5.2e-18 95.5 186 36.6
Eucgr.K00480 Eucalyptus grandis HOM05D003018 ORTHO05D003402 1.5e-17 94.0 186 37.1
HanXRQChr16g0499771 Helianthus annuus HOM05D003018 ORTHO05D003402 2.0e-17 93.6 185 38.4
Sabra15G0000400 Salix brachista HOM05D003018 ORTHO05D003402 2.0e-17 93.6 188 36.7
Aqoxy5G02912 Aquilegia oxysepala HOM05D003018 ORTHO05D003402 3.3e-17 92.8 183 36.6
Nn2g15903 Nelumbo nucifera HOM05D003018 ORTHO05D003402 5.7e-17 92.0 186 37.1
Potri.015G000600 Populus trichocarpa HOM05D003018 ORTHO05D003402 5.7e-17 92.0 188 37.2
CiPaw.06G038200 Carya illinoinensis HOM05D003018 ORTHO05D003402 7.5e-17 91.7 121 43.0
PGR142G0210 Punica granatum HOM05D003018 ORTHO05D003402 7.5e-17 91.7 186 36.6
SGA_v2.0_scaffold165G38214 Striga asiatica HOM05D003018 ORTHO05D003402 9.7e-17 91.3 187 35.8
Zm00001eb084410 Zea mays HOM05D003018 ORTHO05D003402 1.3e-16 90.9 187 36.9
CsaV3_5G000150 Cucumis sativus L. HOM05D003018 ORTHO05D003402 1.7e-16 90.5 185 35.1
FAN03G3459 Fragaria x ananassa HOM05D003018 ORTHO05D003402 1.7e-16 90.5 173 37.0
QL09p005993 Quercus lobata HOM05D003018 ORTHO05D003402 1.7e-16 90.5 190 36.8
Duzib068G0518 Durio zibethinus HOM05D003018 ORTHO05D003402 2.2e-16 90.1 172 36.0
FAN10G1538 Fragaria x ananassa HOM05D003018 ORTHO05D003402 2.2e-16 90.1 173 37.0
Potri.012G004600 Populus trichocarpa HOM05D003018 ORTHO05D003402 2.2e-16 90.1 187 36.9
SalBow4G0431 Salvia bowleyana HOM05D003018 ORTHO05D003402 2.2e-16 90.1 174 36.8
TAR374G1266 Trochodendron aralioides HOM05D003018 ORTHO05D003402 2.2e-16 90.1 187 36.4
HPP92_007053 Vanilla planifolia HOM05D003018 ORTHO05D003402 2.2e-16 90.1 189 36.0
Nitab4.5_0007121g0040 Nicotiana tabacum HOM05D003018 ORTHO05D003402 2.8e-16 89.7 187 35.8
Gorai.006G203900 Gossypium raimondii HOM05D003018 ORTHO05D003402 3.7e-16 89.4 184 34.8
Duzib084G0455 Durio zibethinus HOM05D003018 ORTHO05D003402 4.8e-16 89.0 166 36.7
Duzib205G1477 Durio zibethinus HOM05D003018 ORTHO05D003402 4.8e-16 89.0 172 36.0
ECA232G4756 Erigeron canadensis HOM05D003018 ORTHO05D003402 4.8e-16 89.0 188 34.6
FvH4_7g33330 Fragaria vesca HOM05D003018 ORTHO05D003402 6.3e-16 88.6 186 35.5
FAN10G3922 Fragaria x ananassa HOM05D003018 ORTHO05D003402 6.3e-16 88.6 173 36.4
TAR375G0624 Trochodendron aralioides HOM05D003018 ORTHO05D003402 6.3e-16 88.6 183 36.6
Atru.chr12.2500 Acer truncatum HOM05D003018 ORTHO05D003402 8.2e-16 88.2 186 34.4
MSTRG.26952 Avicennia marina HOM05D003018 ORTHO05D003402 8.2e-16 88.2 146 41.1
Gohir.A12G244400 Gossypium hirsutum HOM05D003018 ORTHO05D003402 8.2e-16 88.2 172 36.6
Gohir.D12G245300 Gossypium hirsutum HOM05D003018 ORTHO05D003402 8.2e-16 88.2 172 36.6
Gorai.008G262900 Gossypium raimondii HOM05D003018 ORTHO05D003402 8.2e-16 88.2 172 36.6
Sed0009908 Sechium edule HOM05D003018 ORTHO05D003402 8.2e-16 88.2 185 34.6
Gohir.A09G187100 Gossypium hirsutum HOM05D003018 ORTHO05D003402 1.1e-15 87.8 184 34.8
PGSC0003DMG400000572 Solanum tuberosum HOM05D003018 ORTHO05D003402 1.1e-15 87.8 193 35.2
Thecc.03G212100 Theobroma cacao HOM05D003018 ORTHO05D003402 1.1e-15 87.8 185 34.6
Atru.chr12.2524 Acer truncatum HOM05D003018 ORTHO05D003402 1.4e-15 87.4 185 34.6
Manes.05G197500 Manihot esculenta HOM05D003018 ORTHO05D003402 1.4e-15 87.4 171 34.5
CAN.G303.60 Capsicum annuum HOM05D003018 ORTHO05D003402 1.8e-15 87.0 191 35.1
CDE06G0409 Ceratophyllum demersum HOM05D003018 ORTHO05D003402 1.8e-15 87.0 185 35.1
PSO017G1017 Papaver somniferum HOM05D003018 ORTHO05D003402 1.8e-15 87.0 185 35.1
PSO478G2764 Papaver somniferum HOM05D003018 ORTHO05D003402 1.8e-15 87.0 185 35.1
vmacro06475 Vaccinium macrocarpon HOM05D003018 ORTHO05D003402 1.8e-15 87.0 187 35.8
CSS0041512 Camellia sinensis var. sinensis HOM05D003018 ORTHO05D003402 2.4e-15 86.7 188 35.1
FAN01G2324 Fragaria x ananassa HOM05D003018 ORTHO05D003402 2.4e-15 86.7 173 36.4
Solyc03g079940.3 Solanum lycopersicum HOM05D003018 ORTHO05D003402 2.4e-15 86.7 187 35.3
Sopen03g027480 Solanum pennellii HOM05D003018 ORTHO05D003402 2.4e-15 86.7 187 35.3
TWI39G0588 Tripterygium wilfordii HOM05D003018 ORTHO05D003402 2.4e-15 86.7 152 39.5
CANSAT21G0709 Cannabis sativa HOM05D003018 ORTHO05D003402 3.1e-15 86.3 186 34.9
Actinidia34288 Actinidia chinensis HOM05D003018 ORTHO05D003402 4.1e-15 85.9 187 36.4
Migut.F00122 Erythranthe guttata HOM05D003018 ORTHO05D003402 4.1e-15 85.9 173 35.3
Peaxi162Scf01026g00260 Petunia axillaris HOM05D003018 ORTHO05D003402 4.1e-15 85.9 171 37.4
Ciclev10021773m.g Citrus clementina HOM05D003018 ORTHO05D003402 5.3e-15 85.5 186 34.9
Migut.F00968 Erythranthe guttata HOM05D003018 ORTHO05D003402 5.3e-15 85.5 169 35.5
PGR042G2079 Punica granatum HOM05D003018 ORTHO05D003402 5.3e-15 85.5 185 34.6
Eucgr.A00976 Eucalyptus grandis HOM05D003018 ORTHO05D003402 7.0e-15 85.1 172 34.3
Sed0018717 Sechium edule HOM05D003018 ORTHO05D003402 7.0e-15 85.1 187 34.8
Lj3C891T18 Lonicera japonica HOM05D003018 ORTHO05D003402 9.1e-15 84.7 182 35.7
GSVIVG01038683001 Vitis vinifera HOM05D003018 ORTHO05D003402 9.1e-15 84.7 122 41.0
arahy.Tifrunner.gnm1.ann1.KA8TW6 Arachis hypogaea HOM05D003018 ORTHO05D003402 1.2e-14 84.3 187 34.2
arahy.Tifrunner.gnm1.ann1.SR3247 Arachis hypogaea HOM05D003018 ORTHO05D003402 1.2e-14 84.3 187 34.2
Ca_16839_v3 Cicer arietinum L. HOM05D003018 ORTHO05D003402 1.2e-14 84.3 182 36.3
Dinv29191 Davidia involucrata HOM05D003018 ORTHO05D003402 1.2e-14 84.3 188 34.0
MD07G1303500 Malus domestica HOM05D003018 ORTHO05D003402 1.2e-14 84.3 187 34.2
PSO782G4498 Papaver somniferum HOM05D003018 ORTHO05D003402 1.2e-14 84.3 168 36.3
Actinidia08721 Actinidia chinensis HOM05D003018 ORTHO05D003402 1.6e-14 84.0 182 37.9
CiPaw.05G208700 Carya illinoinensis HOM05D003018 ORTHO05D003402 1.6e-14 84.0 123 39.0
CDE02G1662 Ceratophyllum demersum HOM05D003018 ORTHO05D003402 1.6e-14 84.0 185 33.5
RcHm_v2.0_Chr1g0383311 Rosa chinensis HOM05D003018 ORTHO05D003402 1.6e-14 84.0 175 34.9
Glyma.06G139200 Glycine max HOM05D003018 ORTHO05D003402 2.0e-14 83.6 187 34.8
Gohir.A11G017100 Gossypium hirsutum HOM05D003018 ORTHO05D003402 2.0e-14 83.6 152 38.2
MD01G1231500 Malus domestica HOM05D003018 ORTHO05D003402 2.0e-14 83.6 187 33.7
AUR62005947 Chenopodium quinoa HOM05D003018 ORTHO05D003402 2.6e-14 83.2 188 33.0
Prupe.2G322200 Prunus persica HOM05D003018 ORTHO05D003402 2.6e-14 83.2 187 34.2
AUR62028118 Chenopodium quinoa HOM05D003018 ORTHO05D003402 3.5e-14 82.8 188 33.0
Zm00001eb242440 Zea mays HOM05D003018 ORTHO05D003402 3.5e-14 82.8 121 41.3
DCAR_010557 Daucus carota HOM05D003018 ORTHO05D003402 4.5e-14 82.4 122 41.0
Glyma.04G225600 Glycine max HOM05D003018 ORTHO05D003402 4.5e-14 82.4 187 34.2
Lj1g0024936 Lotus japonicus HOM05D003018 ORTHO05D003402 4.5e-14 82.4 182 35.7
MBI07_g11061_MAGBIO Magnolia biondii HOM05D003018 ORTHO05D003402 4.5e-14 82.4 182 35.2
ATR0582G341 Amborella trichopoda HOM05D003018 ORTHO05D003402 5.9e-14 82.0 172 34.9
Gohir.D11G016900 Gossypium hirsutum HOM05D003018 ORTHO05D003402 5.9e-14 82.0 152 37.5
Phvul.009G040400 Phaseolus vulgaris HOM05D003018 ORTHO05D003402 1.0e-13 81.3 187 33.7
Dinv17276 Davidia involucrata HOM05D003018 ORTHO05D003402 1.3e-13 80.9 183 35.0
Lalb_Chr11g0067561 Lupinus albus HOM05D003018 ORTHO05D003402 1.3e-13 80.9 199 34.7
Lalb_Chr23g0272051 Lupinus albus HOM05D003018 ORTHO05D003402 1.3e-13 80.9 187 34.2
TPR.G35918 Trifolium pratense HOM05D003018 ORTHO05D003402 1.7e-13 80.5 185 33.0
Lsat_1_v5_gn_2_3400 Lactuca sativa HOM05D003018 ORTHO05D003402 2.2e-13 80.1 110 41.8
VMungo1309G0595 Vigna mungo HOM05D003018 ORTHO05D003402 2.2e-13 80.1 186 33.3
Oeu017358.1 Olea europaea HOM05D003018 ORTHO05D003402 3.8e-13 79.3 181 34.8
Zm00001eb181270 Zea mays HOM05D003018 ORTHO05D003402 3.8e-13 79.3 121 38.8
Medtr3g093380 Medicago truncatula HOM05D003018 ORTHO05D003402 8.5e-13 78.2 152 36.8
Psat5g071120 Pisum sativum HOM05D003018 ORTHO05D003402 8.5e-13 78.2 170 32.9
Sc19g0000360 Simmondsia chinensis HOM05D003018 ORTHO05D003402 1.9e-12 77.0 146 35.6
unitig_62.g23859 Utricularia gibba HOM05D003018 ORTHO05D003402 3.2e-12 76.3 110 40.0
unitig_64.g29776 Utricularia gibba HOM05D000525 ORTHO05D001368 3.2e-12 76.3 110 40.0
PSO729G0279 Papaver somniferum HOM05D003018 ORTHO05D003402 5.5e-12 75.5 167 35.9
EL10Ac3g05130 Beta vulgaris HOM05D003018 ORTHO05D003402 1.2e-11 74.3 124 36.3
Cc02_g00590 Coffea canephora HOM05D003018 ORTHO05D003402 1.2e-11 74.3 130 36.2
Os04g0405100 Oryza sativa ssp. japonica HOM05D003018 ORTHO05D003402 1.2e-11 74.3 121 38.8
Lsat_1_v5_gn_0_9661 Lactuca sativa HOM05D003018 ORTHO05D003402 1.6e-11 73.9 181 31.5
BcaB06g28023 Brassica carinata HOM05D010818 ORTHO05D091673 2.7e-11 73.2 125 38.4
Mapoly0083s0018 Marchantia polymorpha HOM05D003018 ORTHO05D003402 1.0e-10 71.2 181 35.4
Nitab4.5_0000021g0210 Nicotiana tabacum HOM05D003018 ORTHO05D003402 1.0e-10 71.2 167 34.7
Rhsim03G0218500 Rhododendron simsii HOM05D003018 ORTHO05D003402 1.4e-10 70.9 183 32.8
PSO832G1145 Papaver somniferum HOM05D003018 ORTHO05D003402 1.8e-10 70.5 118 39.0
SMO356G0102 Selaginella moellendorffii HOM05D003018 ORTHO05D003402 1.8e-10 70.5 185 33.5
Cpa.g.sc3.188 Carica papaya HOM05D003018 ORTHO05D003402 4.0e-10 69.3 94 43.6
ClCG00G004180 Citrullus lanatus HOM05D003018 ORTHO05D003402 5.2e-10 68.9 93 44.1
Pp3c25_7060 Physcomitrium patens HOM05D003018 ORTHO05D003402 5.2e-10 68.9 185 34.1
PSO017G0083 Papaver somniferum HOM05D003018 ORTHO05D003402 6.8e-10 68.6 119 38.7
C08p05060 Brassica napus HOM05D003018 ORTHO05D003402 1.5e-09 67.4 73 47.9
ClCG01G000020 Citrullus lanatus HOM05D003018 ORTHO05D003402 2.0e-09 67.0 180 30.6
Eucgr.K00528 Eucalyptus grandis HOM05D003018 ORTHO05D003402 2.6e-09 66.6 92 43.5
HanXRQChr15g0497021 Helianthus annuus HOM05D003018 ORTHO05D003402 2.6e-09 66.6 220 29.5
Ah.13g071050 Amaranthus hybridus HOM05D003018 ORTHO05D003402 3.4e-09 66.2 180 28.9
Hma1.2p1_0115F.1_g055830 Hydrangea macrophylla HOM05D003018 ORTHO05D003402 4.4e-09 65.9 93 44.1
SEGI_14341 Sequoiadendron giganteum HOM05D003018 ORTHO05D003402 4.4e-09 65.9 100 39.0
BcaC05g24736 Brassica carinata HOM05D010818 ORTHO05D096276 7.5e-09 65.1 56 62.5
PSO339G1784 Papaver somniferum HOM05D003018 ORTHO05D003402 7.5e-09 65.1 167 29.3
MCO01G667 Micromonas commoda HOM05D003018 ORTHO05D003402 4.8e-08 62.4 139 33.1
Lalb_Chr08g0239401 Lupinus albus HOM05D003018 ORTHO05D003402 8.3e-08 61.6 91 44.0
ECA232G1833 Erigeron canadensis HOM05D000455 ORTHO05D000434 1.8e-07 60.5 128 32.0
BcaC01g03859 Brassica carinata HOM05D010818 ORTHO05D090751 2.4e-07 60.1 58 60.3
unitig_52.g16865 Utricularia gibba HOM05D003018 ORTHO05D003402 3.1e-07 59.7 165 32.1
Haze_00335 Corylus avellana HOM05D003018 ORTHO05D003402 4.1e-07 59.3 135 31.9
CiPaw.05G209100 Carya illinoinensis HOM05D003018 ORTHO05D003402 5.4e-07 58.9 74 41.9
PSO675G9013 Papaver somniferum HOM05D003018 ORTHO05D003402 3.5e-06 56.2 168 31.5
ECA248G2250 Erigeron canadensis HOM05D003018 ORTHO05D003402 4.5e-06 55.8 122 36.1


User provided reference genes

Program Settings