Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 0.0e+00 1625.9 883 100.0
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 0.0e+00 1597.0 881 98.1
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 0.0e+00 1538.9 883 95.0
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 0.0e+00 1538.9 883 95.0
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 0.0e+00 1323.1 895 81.9
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 0.0e+00 1273.5 899 80.4
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 0.0e+00 1246.1 902 78.9
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 0.0e+00 1243.8 894 78.5
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 0.0e+00 1229.2 909 76.2
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 0.0e+00 1212.2 897 77.4
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 0.0e+00 1210.3 898 77.3
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 0.0e+00 1205.7 897 77.4
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 0.0e+00 1197.2 897 76.9
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 0.0e+00 1188.3 903 76.6
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 0.0e+00 1187.6 897 76.8
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 0.0e+00 1162.5 903 73.9
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 7.5e-305 1050.4 919 67.7
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 2.7e-278 962.2 919 65.4
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 2.2e-259 899.4 586 84.3
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 1.8e-245 853.2 847 62.3
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 8.2e-243 844.3 914 59.0
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 6.4e-163 578.9 941 46.4
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 6.4e-163 578.9 950 45.7
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 1.3e-158 564.7 929 43.6
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.1e-157 561.6 872 43.9
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 3.1e-157 560.1 962 45.3
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 3.4e-156 556.6 937 43.0
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 1.9e-154 550.8 953 44.3
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 1.8e-152 544.3 923 45.6
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.3e-152 543.9 950 44.6
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 3.0e-152 543.5 957 42.2
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.1e-152 542.7 958 44.3
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.1e-151 541.6 950 44.4
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 3.3e-151 540.0 957 41.9
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 1.6e-150 537.7 821 43.6
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 2.1e-150 537.3 966 41.7
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 2.1e-150 537.3 951 43.8
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 1.4e-149 534.6 955 43.9
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 1.4e-149 534.6 933 42.4
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 5.3e-149 532.7 945 42.9
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 1.2e-148 531.6 940 41.7
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 2.0e-148 530.8 937 43.0
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.3e-147 528.1 834 43.6
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.8e-147 526.6 834 43.6
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 6.5e-147 525.8 948 43.4
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 1.1e-146 525.0 954 43.1
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.5e-146 523.9 962 43.2
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 3.2e-146 523.5 962 43.2
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 3.2e-146 523.5 834 43.8
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 7.2e-146 522.3 956 43.8
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.6e-145 521.2 960 41.8
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.1e-145 520.8 949 42.3
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 6.1e-145 519.2 955 42.3
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.0e-144 518.5 954 43.0
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 3.0e-144 516.9 977 41.2
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 3.9e-144 516.5 952 43.6
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 5.1e-144 516.2 919 43.5
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 9.7e-143 511.9 945 41.8
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 3.7e-142 510.0 878 41.5
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.8e-141 507.7 959 43.0
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 2.4e-141 507.3 956 42.5
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 3.1e-141 506.9 955 42.3
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 6.9e-141 505.8 968 40.6
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 2.2e-139 500.7 904 42.7
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 6.5e-139 499.2 947 40.5
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 9.4e-138 495.4 962 39.5
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.6e-137 494.6 893 40.3
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 2.7e-137 493.8 938 41.2
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 2.7e-137 493.8 1005 39.2
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 7.9e-137 492.3 897 40.5
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 7.9e-137 492.3 983 40.3
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 1.4e-136 491.5 961 39.8
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 1.5e-135 488.0 946 42.5
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 4.3e-135 486.5 902 43.6
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 7.4e-135 485.7 951 42.1
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 2.8e-134 483.8 907 41.1
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 8.2e-134 482.3 904 39.0
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 8.2e-134 482.3 856 40.4
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 4.1e-133 479.9 798 41.1
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 5.9e-132 476.1 851 40.1
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 1.7e-131 474.6 840 41.5
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 2.2e-131 474.2 931 42.4
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 2.2e-131 474.2 924 41.6
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 3.8e-131 473.4 785 41.7
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 3.8e-131 473.4 843 41.6
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 3.2e-130 470.3 890 42.2
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 7.2e-130 469.2 903 40.2
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 7.2e-130 469.2 1038 39.5
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 2.1e-129 467.6 946 39.7
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 2.7e-129 467.2 937 38.0
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 2.3e-128 464.2 843 39.9
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 2.3e-128 464.2 849 44.2
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 6.7e-128 462.6 750 44.1
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 6.7e-128 462.6 866 40.2
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 1.5e-127 461.5 918 40.8
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 1.5e-127 461.5 870 40.7
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 4.4e-127 459.9 863 41.3
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 5.7e-127 459.5 927 42.2
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 2.8e-126 457.2 915 41.3
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 3.7e-126 456.8 933 38.8
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 4.8e-126 456.4 867 42.9
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 8.2e-126 455.7 925 39.5
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 1.8e-125 454.5 643 47.7
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 2.4e-125 454.1 599 49.6
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 2.6e-124 450.7 944 38.8
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 5.9e-124 449.5 707 46.0
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 5.9e-124 449.5 929 41.4
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 7.7e-124 449.1 924 39.4
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 5.0e-123 446.4 937 38.4
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 9.4e-122 442.2 948 39.5
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 2.7e-121 440.7 937 38.2
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 8.0e-121 439.1 896 38.7
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 6.7e-120 436.0 850 42.1
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.1e-119 435.3 846 40.5
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 9.7e-119 432.2 875 41.0
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 2.2e-118 431.0 869 39.9
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 1.8e-117 427.9 834 40.4
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 7.0e-117 426.0 811 39.5
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 1.3e-115 421.8 834 39.6
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 1.7e-115 421.4 898 38.5
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 4.2e-114 416.8 886 38.6
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 9.4e-114 415.6 854 37.7
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 2.1e-113 414.5 957 37.5
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.2e-111 408.7 655 45.8
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 2.1e-105 387.9 917 37.2
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 4.7e-105 386.7 742 40.7
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 1.0e-104 385.6 811 41.4
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 3.7e-102 377.1 685 41.2
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 6.3e-102 376.3 908 37.2
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 1.1e-101 375.6 822 34.8
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 3.3e-98 364.0 900 35.7
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 5.6e-98 363.2 892 36.2
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 9.8e-95 352.4 880 34.8
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 6.4e-94 349.7 612 43.6
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.6e-92 345.1 898 35.5
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 7.8e-92 342.8 649 41.4
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 3.0e-91 340.9 799 38.4
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 9.8e-87 325.9 841 35.2
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 1.5e-79 302.0 982 31.6
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 2.0e-79 301.6 533 38.8
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 3.2e-77 294.3 495 43.0
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 1.2e-76 292.4 897 34.6
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 1.3e-75 288.9 448 43.8
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 1.7e-75 288.5 853 34.5
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 7.1e-69 266.5 680 35.3
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.0e-67 261.2 801 31.3
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 3.9e-67 260.8 828 31.9
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 4.3e-66 257.3 743 33.9
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 8.9e-64 249.6 832 30.9
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 2.4e-61 241.5 380 41.6
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.2e-61 241.1 413 44.8
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 1.3e-57 229.2 760 32.1
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 4.8e-57 227.3 250 51.2
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 5.8e-55 220.3 481 42.4
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 6.7e-51 206.8 324 43.2
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 1.2e-44 186.0 415 41.7
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 9.0e-40 169.9 552 32.6
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 2.0e-39 168.7 382 37.2
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 5.5e-37 160.6 193 49.7
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 1.9e-34 152.1 312 32.1
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 1.8e-32 145.6 277 43.7
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 9.0e-32 143.3 111 59.5
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 2.9e-30 138.3 208 42.3
A09p03500 Brassica napus HOM05D003655 ORTHO05D041909 5.7e-26 124.0 101 71.3
BraA09t35988Z Brassica rapa HOM05D003655 ORTHO05D041909 5.7e-26 124.0 101 71.3
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 8.2e-25 120.2 295 35.6
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 2.4e-24 118.6 348 34.5
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.1e-24 117.9 254 44.1
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 1.0e-22 113.2 107 56.1
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 8.5e-22 110.2 102 52.0
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.1e-21 109.8 278 33.5
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 7.9e-20 103.6 186 38.7
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 9.7e-18 96.7 375 30.1
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 9.1e-16 90.1 140 36.4
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 1.0e-11 76.6 42 78.6
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 1.8e-08 65.9 81 43.2
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.2e-07 63.2 122 37.7
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 2.6e-07 62.0 118 39.0
FAN27G2349 Fragaria x ananassa HOM05D000561 ORTHO05D000514 5.9e-07 60.8 103 32.0
FAN20G0228 Fragaria x ananassa HOM05D000561 ORTHO05D000514 5.0e-06 57.8 178 26.4


User provided reference genes

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