Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p40770 Brassica napus HOM05D001104 ORTHO05D006624 7.0e-167 590.5 290 100.0
BolC7t44224H Brassica oleracea HOM05D001104 ORTHO05D006624 1.5e-164 582.8 290 99.0
BcaC06g33770 Brassica carinata HOM05D001104 ORTHO05D006624 1.9e-164 582.4 289 99.0
C07p37130 Brassica napus HOM05D001104 ORTHO05D006624 1.9e-164 582.4 289 99.0
BraA06t26998Z Brassica rapa HOM05D001104 ORTHO05D006624 1.9e-164 582.4 290 99.3
BcaC06g30950 Brassica carinata HOM05D001104 ORTHO05D006624 3.1e-162 575.1 289 96.5
Sp2g16980 Schrenkiella parvula HOM05D001104 ORTHO05D006624 2.3e-154 548.9 289 92.4
Thhalv10004293m.g Eutrema salsugineum HOM05D001104 ORTHO05D006624 2.1e-150 535.8 289 91.3
THA.LOC104825337 Tarenaya hassleriana HOM05D001104 ORTHO05D006624 1.6e-139 499.6 289 83.7
AL5G17430 Arabidopsis lyrata HOM05D001104 ORTHO05D006624 8.4e-136 487.3 290 82.4
Carub.0005s0650 Capsella rubella HOM05D001104 ORTHO05D006624 2.1e-134 482.6 289 81.3
CARHR149500 Cardamine hirsuta HOM05D001104 ORTHO05D006624 4.6e-134 481.5 291 81.8
Aa31LG2G4840 Aethionema arabicum HOM05D001104 ORTHO05D006285 4.3e-132 474.9 270 86.3
AT3G27930 Arabidopsis thaliana HOM05D001104 ORTHO05D006624 3.6e-131 471.9 290 79.7
Haze_14675 Corylus avellana HOM05D001104 ORTHO05D006624 3.4e-129 465.3 289 77.5
Cfa007422 Carpinus fangiana HOM05D001104 ORTHO05D006624 2.2e-128 462.6 289 77.2
Rhsim10G0021500 Rhododendron simsii HOM05D001104 ORTHO05D006624 6.0e-126 454.5 284 76.8
Cpa.g.sc215.8 Carica papaya HOM05D001104 ORTHO05D006624 7.9e-126 454.1 289 75.4
TWI12G0063 Tripterygium wilfordii HOM05D001104 ORTHO05D006624 1.5e-124 449.9 289 74.7
Sed0005946 Sechium edule HOM05D001104 ORTHO05D006624 1.9e-124 449.5 289 75.1
CiPaw.03G038600 Carya illinoinensis HOM05D001104 ORTHO05D006624 3.3e-124 448.7 289 75.1
MD17G1034200 Malus domestica HOM05D001104 ORTHO05D006624 4.3e-124 448.4 289 74.0
Prupe.3G285400 Prunus persica HOM05D001104 ORTHO05D006624 5.6e-124 448.0 289 74.4
Atru.chr6.2305 Acer truncatum HOM05D001104 ORTHO05D006624 9.6e-124 447.2 289 74.7
Dinv33487 Davidia involucrata HOM05D001104 ORTHO05D006624 2.8e-123 445.7 291 74.6
CSS0039746 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 3.6e-123 445.3 291 74.2
CsaV3_5G027380 Cucumis sativus L. HOM05D001104 ORTHO05D006624 8.1e-123 444.1 289 74.4
MELO3C021546.2 Cucumis melo HOM05D001104 ORTHO05D006624 1.4e-122 443.4 289 74.0
Dinv35069 Davidia involucrata HOM05D001104 ORTHO05D006624 1.4e-122 443.4 291 73.5
CSS0024274 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 1.8e-122 443.0 294 73.5
Hma1.2p1_0993F.1_g245480 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 3.1e-122 442.2 291 73.5
Thecc.04G010000 Theobroma cacao HOM05D001104 ORTHO05D006624 3.1e-122 442.2 289 74.4
Sc03g0007930 Simmondsia chinensis HOM05D001104 ORTHO05D006624 5.3e-122 441.4 290 72.8
TAR374G1405 Trochodendron aralioides HOM05D001104 ORTHO05D006624 1.2e-121 440.3 289 73.4
Oeu062922.1 Olea europaea HOM05D001104 ORTHO05D006624 1.5e-121 439.9 291 73.5
Cc07_g02180 Coffea canephora HOM05D001104 ORTHO05D006624 2.6e-121 439.1 291 72.9
Duzib147G0036 Durio zibethinus HOM05D001104 ORTHO05D006624 2.6e-121 439.1 289 74.4
Nitab4.5_0001709g0040 Nicotiana tabacum HOM05D001104 ORTHO05D006624 3.4e-121 438.7 291 73.5
Ciclev10015353m.g Citrus clementina HOM05D001104 ORTHO05D006624 1.7e-120 436.4 289 72.7
Potri.001G348700 Populus trichocarpa HOM05D001104 ORTHO05D006624 1.7e-120 436.4 289 72.3
CAN.G973.9 Capsicum annuum HOM05D001104 ORTHO05D006624 2.9e-120 435.6 291 73.2
Actinidia06020 Actinidia chinensis HOM05D001104 ORTHO05D006624 6.4e-120 434.5 283 74.2
Actinidia35743 Actinidia chinensis HOM05D001104 ORTHO05D006624 8.4e-120 434.1 290 73.8
Eucgr.I01793 Eucalyptus grandis HOM05D001104 ORTHO05D006624 8.4e-120 434.1 292 72.6
Solyc02g067740.4 Solanum lycopersicum HOM05D001104 ORTHO05D006624 8.4e-120 434.1 290 73.1
HanXRQChr14g0450311 Helianthus annuus HOM05D001104 ORTHO05D006624 1.1e-119 433.7 291 71.8
GSVIVG01032469001 Vitis vinifera HOM05D001104 ORTHO05D006624 1.9e-119 433.0 289 72.3
Sopen02g016860 Solanum pennellii HOM05D001104 ORTHO05D006624 3.2e-119 432.2 290 72.8
Migut.H00115 Erythranthe guttata HOM05D001104 ORTHO05D006624 4.2e-119 431.8 292 72.3
FAN02G3192 Fragaria x ananassa HOM05D001104 ORTHO05D006624 5.5e-119 431.4 289 70.9
MSTRG.15512 Avicennia marina HOM05D001104 ORTHO05D006624 7.1e-119 431.0 282 73.4
FvH4_6g50760 Fragaria vesca HOM05D001104 ORTHO05D006624 7.1e-119 431.0 289 70.6
PGSC0003DMG400006955 Solanum tuberosum HOM05D001104 ORTHO05D006624 9.3e-119 430.6 290 72.8
ECA238G2799 Erigeron canadensis HOM05D001104 ORTHO05D006624 1.2e-118 430.3 293 70.6
FAN14G0697 Fragaria x ananassa HOM05D001104 ORTHO05D006624 3.5e-118 428.7 289 70.2
RcHm_v2.0_Chr2g0171701 Rosa chinensis HOM05D001104 ORTHO05D006624 3.5e-118 428.7 289 71.3
CANSAT64G0855 Cannabis sativa HOM05D001104 ORTHO05D006624 7.9e-118 427.6 288 71.5
SGA_v2.0_scaffold135G34875 Striga asiatica HOM05D001104 ORTHO05D006624 1.0e-117 427.2 292 71.9
FAN05G2035 Fragaria x ananassa HOM05D001104 ORTHO05D006624 1.3e-117 426.8 289 70.2
Gorai.001G262300 Gossypium raimondii HOM05D001104 ORTHO05D006624 6.7e-117 424.5 289 71.3
Gohir.A07G220700 Gossypium hirsutum HOM05D001104 ORTHO05D006624 1.1e-116 423.7 289 70.9
COL.COLO4_28978 Corchorus olitorius HOM05D001104 ORTHO05D006624 2.5e-116 422.5 312 69.2
MD09G1032600 Malus domestica HOM05D001104 ORTHO05D006624 4.8e-115 418.3 289 70.6
Aqoxy3G01030 Aquilegia oxysepala HOM05D001104 ORTHO05D006624 5.3e-114 414.8 287 69.3
QL02p076349 Quercus lobata HOM05D001104 ORTHO05D006624 9.0e-114 414.1 289 70.2
PGR142G0881 Punica granatum HOM05D001104 ORTHO05D006624 1.5e-113 413.3 282 70.2
BcaC03g17495 Brassica carinata HOM05D001104 ORTHO05D006624 2.0e-113 412.9 291 73.2
Nn4g22776 Nelumbo nucifera HOM05D001104 ORTHO05D006624 2.0e-113 412.9 290 69.0
PSO478G3469 Papaver somniferum HOM05D001104 ORTHO05D006624 2.6e-113 412.5 292 69.2
SalBow1G5303 Salvia bowleyana HOM05D001104 ORTHO05D006624 2.6e-113 412.5 293 69.6
arahy.Tifrunner.gnm1.ann1.S5BZSG Arachis hypogaea HOM05D001104 ORTHO05D006624 1.0e-112 410.6 290 68.3
arahy.Tifrunner.gnm1.ann1.PA6DSG Arachis hypogaea HOM05D001104 ORTHO05D006624 1.3e-112 410.2 290 68.6
Medtr6g007040 Medicago truncatula HOM05D001104 ORTHO05D006624 3.8e-112 408.7 281 69.4
Phvul.004G013700 Phaseolus vulgaris HOM05D001104 ORTHO05D006624 3.8e-112 408.7 281 70.8
Glyma.19G007900 Glycine max HOM05D001104 ORTHO05D006624 6.5e-112 407.9 286 69.9
ECA232G2826 Erigeron canadensis HOM05D001104 ORTHO05D006624 4.2e-111 405.2 281 69.0
vmacro05831 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 5.5e-111 404.8 299 67.9
VMungo0464G0407 Vigna mungo HOM05D001104 ORTHO05D006624 6.0e-110 401.4 281 68.0
HanXRQChr09g0266171 Helianthus annuus HOM05D001104 ORTHO05D006624 3.9e-109 398.7 277 69.7
ClCG09G018970 Citrullus lanatus HOM05D001104 ORTHO05D006624 1.4e-106 390.2 341 58.9
Hma1.2p1_3249F.1_g334430 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 1.4e-106 390.2 255 73.3
Peaxi162Scf00933g00005 Petunia axillaris HOM05D001104 ORTHO05D006624 2.0e-105 386.3 260 71.9
Lj7C592G4 Lonicera japonica HOM05D001104 ORTHO05D006624 2.6e-105 386.0 290 65.5
Lalb_Chr06g0176011 Lupinus albus HOM05D001104 ORTHO05D006624 5.9e-105 384.8 277 66.4
DCAR_011201 Daucus carota HOM05D001104 ORTHO05D006624 2.9e-104 382.5 260 70.8
MBI16_g05636_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006624 2.5e-103 379.4 259 69.9
ATR0730G148 Amborella trichopoda HOM05D001104 ORTHO05D006624 2.1e-102 376.3 287 62.0
Ca_04192_v3 Cicer arietinum L. HOM05D001104 ORTHO05D006624 1.3e-101 373.6 281 66.2
Lj2g0012499 Lotus japonicus HOM05D001104 ORTHO05D006624 1.3e-101 373.6 274 66.1
Gohir.D07G227400 Gossypium hirsutum HOM05D001104 ORTHO05D006624 1.5e-100 370.2 259 69.9
PSO017G6424 Papaver somniferum HOM05D001104 ORTHO05D006624 2.5e-100 369.4 292 63.7
Os05g0577800 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 4.3e-100 368.6 290 61.0
HPP92_024321 Vanilla planifolia HOM05D001104 ORTHO05D006285 7.4e-100 367.9 277 63.5
DCAR_015045 Daucus carota HOM05D001104 ORTHO05D006624 9.7e-100 367.5 335 57.9
EL10Ac4g08579 Beta vulgaris HOM05D001104 ORTHO05D006624 3.7e-99 365.5 291 63.2
Lsat_1_v5_gn_4_182480 Lactuca sativa HOM05D001104 ORTHO05D006624 3.7e-99 365.5 285 63.9
C02p54570 Brassica napus HOM05D001104 ORTHO05D006624 1.5e-97 360.1 267 70.8
C02p54520 Brassica napus HOM05D001104 ORTHO05D006624 1.3e-96 357.1 264 70.1
CDE06G1183 Ceratophyllum demersum HOM05D001104 ORTHO05D006624 5.9e-89 331.6 289 56.7
CSS0012459 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 6.5e-88 328.2 296 59.8
CSS0016338 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 2.5e-87 326.2 318 56.0
BraA02t08571Z Brassica rapa HOM05D001104 ORTHO05D006624 6.1e-86 321.6 543 40.3
vmacro18250 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 1.2e-81 307.4 205 70.7
Manes.17G117000 Manihot esculenta HOM05D001104 ORTHO05D006624 2.9e-80 302.8 289 56.1
BolC2t11520H Brassica oleracea HOM05D001104 ORTHO05D006624 6.5e-80 301.6 332 54.5
Os05g0577900 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 1.6e-78 297.0 282 50.7
Oeu043054.1 Olea europaea HOM05D001104 ORTHO05D006285 2.1e-78 296.6 250 60.4
TPR.G2265 Trifolium pratense HOM05D001104 ORTHO05D006624 2.3e-77 293.1 193 70.5
BolC2t11515H Brassica oleracea HOM05D001104 ORTHO05D006624 3.0e-77 292.7 487 40.0
Nitab4.5_0001125g0070 Nicotiana tabacum HOM05D001104 ORTHO05D006624 2.7e-70 269.6 291 51.2
AagrBONN_evm.TU.Sc2ySwM_340.221 Anthoceros agrestis HOM05D001104 ORTHO05D006624 4.0e-69 265.8 293 46.4
unitig_899.g15491 Utricularia gibba HOM05D000928 ORTHO05D001186 1.4e-66 257.3 268 50.0
AUR62043218 Chenopodium quinoa HOM05D001104 ORTHO05D006624 5.9e-65 251.9 249 54.2
HanXRQChr06g0175561 Helianthus annuus HOM05D001104 ORTHO05D006624 8.0e-62 241.5 230 55.7
A02p35680 Brassica napus HOM05D001104 ORTHO05D006624 2.3e-61 240.0 510 35.1
Psat1g057160 Pisum sativum HOM05D001104 ORTHO05D006624 3.0e-61 239.6 166 70.5
Pp3c25_9610 Physcomitrium patens HOM05D001104 ORTHO05D006624 4.0e-61 239.2 293 43.7
AUR62029365 Chenopodium quinoa HOM05D001104 ORTHO05D006624 1.9e-55 220.3 290 44.5
Rhsim08G0054100 Rhododendron simsii HOM05D001104 ORTHO05D006285 6.1e-54 215.3 271 46.9
Cfa008567 Carpinus fangiana HOM05D001104 ORTHO05D006624 1.0e-45 188.0 162 61.1
Zm00001eb344500 Zea mays HOM05D001104 ORTHO05D006624 2.5e-39 166.8 133 60.9
SEGI_13753 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 2.8e-38 163.3 154 50.6
Glyma.05G007402 Glycine max HOM05D001104 ORTHO05D006624 5.8e-28 129.0 77 77.9
BcaB07g30139 Brassica carinata HOM05D001104 ORTHO05D006624 2.8e-22 110.2 67 85.1
Oeu043225.1 Olea europaea HOM05D003428 ORTHO05D006624 8.1e-22 108.6 258 30.6
Hund10304 Selenicereus undatus HOM05D001104 ORTHO05D006624 1.1e-21 108.2 126 46.8
Oeu051906.1 Olea europaea HOM05D003428 ORTHO05D006624 8.9e-21 105.1 258 30.2
Cfa008566 Carpinus fangiana HOM05D001104 ORTHO05D006624 1.4e-18 97.8 60 80.0
Cre08.g358552 Chlamydomonas reinhardtii HOM05D001104 ORTHO05D006624 2.3e-16 90.5 385 26.0
HanXRQChr16g0517041 Helianthus annuus HOM05D001104 ORTHO05D006624 8.1e-14 82.0 66 56.1
SEGI_12261 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 6.0e-09 65.9 62 53.2
Actinidia36089 Actinidia chinensis HOM05D001104 ORTHO05D006624 5.6e-07 59.3 74 47.3
Psat1g219520 Pisum sativum HOM05D001104 ORTHO05D006624 7.4e-07 58.9 54 53.7
Sopen07g006450 Solanum pennellii HOM05D001104 ORTHO05D006624 7.4e-07 58.9 46 58.7


User provided reference genes

Program Settings