Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p37650 Brassica napus HOM05D006877 ORTHO05D008735 0.0e+00 1080.5 789 100.0
BraA06t26685Z Brassica rapa HOM05D006877 ORTHO05D008735 9.1e-305 1050.4 788 97.7
BolC7t44594H Brassica oleracea HOM05D006877 ORTHO05D008735 2.0e-299 1032.7 787 96.4
C07p40570 Brassica napus HOM05D006877 ORTHO05D008735 1.4e-289 1000.0 769 96.6
Sp2g20510 Schrenkiella parvula HOM05D006877 ORTHO05D008735 2.1e-277 959.5 790 92.2
CARHR185880 Cardamine hirsuta HOM05D006877 ORTHO05D008735 1.6e-261 906.7 769 90.0
Thhalv10003569m.g Eutrema salsugineum HOM05D006877 ORTHO05D008735 2.6e-251 872.8 770 89.0
Aa31LG11G9010 Aethionema arabicum HOM05D006877 ORTHO05D008735 7.6e-243 844.7 765 87.6
AL6G39840 Arabidopsis lyrata HOM05D006877 ORTHO05D008735 6.6e-231 805.1 768 80.2
THA.LOC104821701 Tarenaya hassleriana HOM05D006877 ORTHO05D008735 1.2e-203 714.5 770 77.8
Prupe.2G325900 Prunus persica HOM05D006877 ORTHO05D008735 3.6e-152 543.5 724 63.7
TAR381G0744 Trochodendron aralioides HOM05D006877 ORTHO05D008735 1.3e-149 535.0 759 63.6
RcHm_v2.0_Chr1g0384191 Rosa chinensis HOM05D006877 ORTHO05D008735 4.1e-148 530.0 718 63.1
Lalb_Chr13g0294611 Lupinus albus HOM05D006877 ORTHO05D008735 2.0e-147 527.7 763 61.5
Carub.0006s2526 Capsella rubella HOM05D006877 ORTHO05D008735 9.8e-142 508.8 562 86.8
Sabra19G0059000 Salix brachista HOM05D006877 ORTHO05D008735 9.8e-142 508.8 716 67.3
arahy.Tifrunner.gnm1.ann1.G9QUK2 Arachis hypogaea HOM05D006877 ORTHO05D008735 1.3e-141 508.4 773 65.1
QL09p024038 Quercus lobata HOM05D006877 ORTHO05D008735 1.3e-141 508.4 773 64.8
arahy.Tifrunner.gnm1.ann1.VTBJ7F Arachis hypogaea HOM05D006877 ORTHO05D008735 1.7e-141 508.1 773 65.3
TWI39G0452 Tripterygium wilfordii HOM05D006877 ORTHO05D008735 4.1e-140 503.4 756 59.9
Haze_00425 Corylus avellana HOM05D006877 ORTHO05D008735 1.2e-139 501.9 808 60.6
Dinv17258 Davidia involucrata HOM05D006877 ORTHO05D008735 1.3e-138 498.4 768 62.5
Atru.chr12.1962 Acer truncatum HOM05D006877 ORTHO05D008735 2.3e-138 497.7 732 60.2
Hma1.2p1_0758F.1_g213710 Hydrangea macrophylla HOM05D006877 ORTHO05D008735 3.9e-138 496.9 745 67.0
AT5G27270 Arabidopsis thaliana HOM05D006877 ORTHO05D008735 8.6e-138 495.7 533 81.1
Potri.019G049400 Populus trichocarpa HOM05D006877 ORTHO05D008735 1.5e-137 495.0 728 65.2
CSS0011113 Camellia sinensis var. sinensis HOM05D006877 ORTHO05D008735 1.6e-136 491.5 772 64.8
Ca_18009_v3 Cicer arietinum L. HOM05D006877 ORTHO05D008735 1.4e-135 488.4 757 65.0
Psat7g076160 Pisum sativum HOM05D006877 ORTHO05D008735 2.0e-134 484.6 761 65.4
Ciclev10018634m.g Citrus clementina HOM05D006877 ORTHO05D008735 5.8e-134 483.0 755 58.7
Duzib106G0107 Durio zibethinus HOM05D006877 ORTHO05D008735 2.9e-133 480.7 765 58.6
FAN03G2267 Fragaria x ananassa HOM05D006877 ORTHO05D008735 6.4e-133 479.6 744 60.1
Medtr8g080940 Medicago truncatula HOM05D006877 ORTHO05D008735 1.7e-130 471.5 759 61.8
GSVIVG01024409001 Vitis vinifera HOM05D006877 ORTHO05D008735 1.7e-130 471.5 756 54.5
PSO063G6761 Papaver somniferum HOM05D006877 ORTHO05D008735 8.6e-130 469.2 753 59.4
Lj4g0001495 Lotus japonicus HOM05D006877 ORTHO05D008735 1.1e-129 468.8 719 61.5
Glyma.08G106500 Glycine max HOM05D006877 ORTHO05D008735 9.6e-129 465.7 766 62.9
Actinidia18704 Actinidia chinensis HOM05D006877 ORTHO05D008735 4.7e-128 463.4 764 63.4
Sc25g0001210 Simmondsia chinensis HOM05D006877 ORTHO05D008735 1.4e-127 461.8 730 61.5
MD01G1235800 Malus domestica HOM05D006877 ORTHO05D008735 1.2e-126 458.8 740 59.5
VMungo0251G1190 Vigna mungo HOM05D006877 ORTHO05D008735 1.2e-126 458.8 761 54.4
Manes.09G127200 Manihot esculenta HOM05D006877 ORTHO05D008735 2.6e-126 457.6 732 63.1
Gohir.D08G242601 Gossypium hirsutum HOM05D006877 ORTHO05D008735 2.2e-125 454.5 754 57.7
Gorai.004G258300 Gossypium raimondii HOM05D006877 ORTHO05D008735 3.8e-125 453.8 754 57.6
Gohir.A08G221900 Gossypium hirsutum HOM05D006877 ORTHO05D008735 1.3e-122 445.3 754 57.4
Aqoxy3G02132 Aquilegia oxysepala HOM05D006877 ORTHO05D008735 6.2e-120 436.4 768 56.8
Sed0012706 Sechium edule HOM05D006877 ORTHO05D008735 8.1e-120 436.0 771 60.4
EL10Ac3g05079 Beta vulgaris HOM05D006877 ORTHO05D008735 3.1e-119 434.1 770 57.5
Oeu060385.2 Olea europaea HOM05D006877 ORTHO05D008735 4.5e-118 430.3 792 55.6
ECA246G2862 Erigeron canadensis HOM05D006877 ORTHO05D008735 1.1e-116 425.6 772 57.1
Eucgr.A02969 Eucalyptus grandis HOM05D006877 ORTHO05D008735 5.1e-114 416.8 754 61.7
MBI04_g20982_MAGBIO Magnolia biondii HOM05D006877 ORTHO05D008735 1.5e-113 415.2 745 58.1
TPR.G11966 Trifolium pratense HOM05D006877 ORTHO05D008735 7.4e-113 412.9 850 55.6
Rhsim09G0212700 Rhododendron simsii HOM05D006877 ORTHO05D008735 1.6e-112 411.8 712 64.6
FAN01G1958 Fragaria x ananassa HOM05D006877 ORTHO05D008735 2.1e-112 411.4 785 53.5
CANSAT21G1458 Cannabis sativa HOM05D006877 ORTHO05D008735 8.1e-112 409.5 733 55.3
Ah.04g156540 Amaranthus hybridus HOM05D006877 ORTHO05D008735 9.0e-111 406.0 766 54.7
DCAR_020407 Daucus carota HOM05D006877 ORTHO05D008735 2.6e-110 404.4 774 47.9
FAN10G2126 Fragaria x ananassa HOM05D006877 ORTHO05D008735 3.4e-110 404.1 784 53.4
SGA_v2.0_scaffold18G08509 Striga asiatica HOM05D006877 ORTHO05D008735 1.1e-108 399.1 787 54.8
AUR62002061 Chenopodium quinoa HOM05D006877 ORTHO05D008735 9.3e-108 396.0 779 61.7
COL.COLO4_11806 Corchorus olitorius HOM05D006877 ORTHO05D008735 1.6e-107 395.2 750 56.9
CsaV3_6G010140 Cucumis sativus L. HOM05D006877 ORTHO05D008735 1.3e-106 392.1 765 59.1
PGSC0003DMG400003143 Solanum tuberosum HOM05D006877 ORTHO05D008735 8.7e-106 389.4 750 59.9
MSTRG.8575 Avicennia marina HOM05D006877 ORTHO05D008735 4.3e-105 387.1 768 55.1
Nn1g01910 Nelumbo nucifera HOM05D006877 ORTHO05D008735 5.6e-105 386.7 760 56.6
ClCG02G007690 Citrullus lanatus HOM05D006877 ORTHO05D008735 1.3e-104 385.6 798 56.9
Nitab4.5_0011357g0010 Nicotiana tabacum HOM05D006877 ORTHO05D008735 2.4e-103 381.3 771 59.8
MELO3C024733.2 Cucumis melo HOM05D006877 ORTHO05D008735 5.3e-103 380.2 784 56.5
Sopen03g027750 Solanum pennellii HOM05D006877 ORTHO05D008735 5.3e-103 380.2 750 60.3
HanXRQChr01g0027911 Helianthus annuus HOM05D006877 ORTHO05D008735 1.0e-101 375.9 769 56.0
Nitab4.5_0000021g0490 Nicotiana tabacum HOM05D006877 ORTHO05D008735 3.8e-101 374.0 772 59.7
PGR042G1249 Punica granatum HOM05D006877 ORTHO05D008735 5.5e-100 370.2 750 53.5
Cc03_g15580 Coffea canephora HOM05D006877 ORTHO05D008735 1.2e-99 369.0 753 59.1
Migut.F00097 Erythranthe guttata HOM05D006877 ORTHO05D008735 3.5e-99 367.5 767 53.3
Lsat_1_v5_gn_3_600 Lactuca sativa HOM05D006877 ORTHO05D008735 6.3e-96 356.7 770 50.8
Lj1A1033T71 Lonicera japonica HOM05D006877 ORTHO05D008735 6.3e-96 356.7 741 53.8
Solyc03g097000.3 Solanum lycopersicum HOM05D006877 ORTHO05D008735 6.3e-96 356.7 751 58.5
SalBow4G3121 Salvia bowleyana HOM05D006877 ORTHO05D008735 4.1e-95 354.0 755 57.5
SalBow4G0068 Salvia bowleyana HOM05D006877 ORTHO05D008735 1.5e-94 352.1 755 55.5
CAN.G1131.10 Capsicum annuum HOM05D006877 ORTHO05D008735 7.9e-91 339.7 755 59.2
CDE03G0296 Ceratophyllum demersum HOM05D006877 ORTHO05D008735 8.7e-90 336.3 652 64.9
ATR0829G170 Amborella trichopoda HOM05D006877 ORTHO05D008735 1.1e-89 335.9 277 62.5
Peaxi162Scf00745g00840 Petunia axillaris HOM05D006877 ORTHO05D008735 2.6e-86 324.7 762 56.6
Zm00001eb378980 Zea mays HOM05D006877 ORTHO05D008735 9.1e-79 299.7 767 53.8
Os06g0111300 Oryza sativa ssp. japonica HOM05D006877 ORTHO05D008735 4.2e-76 290.8 218 65.6
AUR62028175 Chenopodium quinoa HOM05D006877 ORTHO05D008735 3.0e-74 284.6 172 81.4
Hund27367 Selenicereus undatus HOM05D006877 ORTHO05D008735 2.6e-73 281.6 773 53.4
Thecc.05G213300 Theobroma cacao HOM05D006877 ORTHO05D008735 9.1e-71 273.1 540 67.4
BcaNung02478 Brassica carinata HOM05D000721 ORTHO05D001990 5.9e-70 270.4 174 82.8
FvH4_7g33960 Fragaria vesca HOM05D006877 ORTHO05D008735 3.3e-65 254.6 542 58.7
Cpa.g.sc39.73 Carica papaya HOM05D006877 ORTHO05D008735 6.3e-56 223.8 257 49.4
Pp3c17_13520 Physcomitrium patens HOM05D006877 ORTHO05D008735 3.0e-50 204.9 229 51.5
Phvul.003G065400 Phaseolus vulgaris HOM05D006877 ORTHO05D008735 1.5e-49 202.6 544 50.9
CiPaw.05G220200 Carya illinoinensis HOM05D006877 ORTHO05D008735 2.4e-47 195.3 259 44.8
Mapoly0001s0556 Marchantia polymorpha HOM05D006877 ORTHO05D008735 1.5e-44 186.0 248 45.2
HPP92_012823 Vanilla planifolia HOM05D006877 ORTHO05D008735 9.8e-41 173.3 580 52.1
SMO203G0003 Selaginella moellendorffii HOM05D006877 ORTHO05D008735 4.4e-33 147.9 218 40.8
vmacro22171 Vaccinium macrocarpon HOM05D006877 ORTHO05D008735 6.4e-32 144.1 114 63.2
SEGI_02928 Sequoiadendron giganteum HOM05D006877 ORTHO05D008735 7.8e-22 110.5 84 58.3
vmacro22170 Vaccinium macrocarpon HOM05D006877 ORTHO05D008735 1.0e-21 110.2 95 58.9
CARHR259090 Cardamine hirsuta HOM05D006877 ORTHO05D008735 5.8e-17 94.4 45 97.8
Cc01_g05460 Coffea canephora HOM05D006877 ORTHO05D008735 2.1e-14 85.9 81 54.3
AagrBONN_evm.TU.Sc2ySwM_362.1641 Anthoceros agrestis HOM05D006877 ORTHO05D008735 1.5e-12 79.7 112 40.2
CBR_g19478 Chara braunii HOM05D006877 ORTHO05D000003 3.6e-11 75.1 174 27.0
CDE06G2178 Ceratophyllum demersum HOM05D006877 ORTHO05D008735 5.2e-10 71.2 76 48.7
PSO210G1488 Papaver somniferum HOM05D002479 ORTHO05D002675 4.4e-09 68.2 114 32.5
MBI02_g29389_MAGBIO Magnolia biondii HOM05D002479 ORTHO05D002675 7.6e-09 67.4 135 29.6
Dinv01391 Davidia involucrata HOM05D002479 ORTHO05D002675 9.9e-09 67.0 136 29.4
TWI36G0440 Tripterygium wilfordii HOM05D002479 ORTHO05D002675 1.3e-08 66.6 146 30.1
CDE05G0456 Ceratophyllum demersum HOM05D002479 ORTHO05D002675 1.7e-08 66.2 133 30.1
ATR0693G368 Amborella trichopoda HOM05D002479 ORTHO05D002675 2.9e-08 65.5 176 25.0
PGR004G1668 Punica granatum HOM05D002479 ORTHO05D002675 2.9e-08 65.5 94 34.0
HanXRQChr15g0480341 Helianthus annuus HOM05D002479 ORTHO05D002675 3.8e-08 65.1 136 28.7
Lsat_1_v5_gn_3_39301 Lactuca sativa HOM05D002479 ORTHO05D002675 4.9e-08 64.7 142 27.5
TAR626G0455 Trochodendron aralioides HOM05D002479 ORTHO05D002675 4.9e-08 64.7 136 29.4
AUR62037373 Chenopodium quinoa HOM05D002479 ORTHO05D002675 6.4e-08 64.3 121 28.9
Mapoly0019s0056 Marchantia polymorpha HOM05D002479 ORTHO05D002675 6.4e-08 64.3 128 28.1
ClCG01G020210 Citrullus lanatus HOM05D002479 ORTHO05D002675 8.4e-08 63.9 135 28.1
Aqoxy4G01360 Aquilegia oxysepala HOM05D002479 ORTHO05D002675 1.4e-07 63.2 124 29.8
Oeu043369.1 Olea europaea HOM05D002479 ORTHO05D002675 1.9e-07 62.8 147 29.3
CSS0000020 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 2.4e-07 62.4 128 28.9
Ah.01g005230 Amaranthus hybridus HOM05D002479 ORTHO05D002675 3.2e-07 62.0 114 29.8
CANSAT64G1102 Cannabis sativa HOM05D002479 ORTHO05D002675 3.2e-07 62.0 139 28.1
Nitab4.5_0027477g0010 Nicotiana tabacum HOM05D002479 ORTHO05D002675 3.2e-07 62.0 137 27.0
Rhsim05G0175800 Rhododendron simsii HOM05D002479 ORTHO05D002675 4.2e-07 61.6 113 27.4
FAN09G3013 Fragaria x ananassa HOM05D002479 ORTHO05D002675 5.4e-07 61.2 137 26.3
AagrBONN_evm.TU.Sc2ySwM_344.385__386 Anthoceros agrestis HOM05D002479 ORTHO05D002675 7.1e-07 60.8 65 41.5
Dinv05062 Davidia involucrata HOM05D000001 ORTHO05D000003 7.1e-07 60.8 266 26.7
FvH4_6g44930 Fragaria vesca HOM05D002479 ORTHO05D002675 7.1e-07 60.8 136 26.5
FAN05G3474 Fragaria x ananassa HOM05D002479 ORTHO05D002675 7.1e-07 60.8 136 26.5
Cc05_g06520 Coffea canephora HOM05D002479 ORTHO05D002675 9.3e-07 60.5 136 27.2
FAN02G3196 Fragaria x ananassa HOM05D002479 ORTHO05D002675 9.3e-07 60.5 136 26.5
FAN14G2792 Fragaria x ananassa HOM05D002479 ORTHO05D002675 9.3e-07 60.5 136 26.5
Potri.013G144800 Populus trichocarpa HOM05D002479 ORTHO05D002675 9.3e-07 60.5 139 30.2
MELO3C014273.2 Cucumis melo HOM05D002479 ORTHO05D002675 1.2e-06 60.1 98 29.6
EL10Ac9g20676 Beta vulgaris HOM05D002479 ORTHO05D002675 1.6e-06 59.7 106 32.1
Lalb_Chr15g0088581 Lupinus albus HOM05D002479 ORTHO05D002675 2.1e-06 59.3 112 29.5
Peaxi162Scf00007g00285 Petunia axillaris HOM05D002479 ORTHO05D002675 2.1e-06 59.3 136 26.5
Sabra13G0116800 Salix brachista HOM05D002479 ORTHO05D002675 2.7e-06 58.9 139 29.5
CSS0034469 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 3.5e-06 58.5 89 33.7
Nitab4.5_0009520g0020 Nicotiana tabacum HOM05D002479 ORTHO05D002675 3.5e-06 58.5 137 25.5
Mapoly0154s0039 Marchantia polymorpha HOM05D004127 ORTHO05D005119 4.6e-06 58.2 121 31.4
Pp3c3_24770 Physcomitrium patens HOM05D000001 ORTHO05D000003 4.6e-06 58.2 310 23.5
arahy.Tifrunner.gnm1.ann1.8Z7TM2 Arachis hypogaea HOM05D002479 ORTHO05D002675 6.0e-06 57.8 112 28.6
CBR_g22948 Chara braunii HOM05D002479 ORTHO05D002675 6.0e-06 57.8 107 29.0
Ciclev10017547m.g Citrus clementina HOM05D002479 ORTHO05D002675 6.0e-06 57.8 148 29.7
MD09G1091700 Malus domestica HOM05D002479 ORTHO05D002675 7.8e-06 57.4 139 26.6
MD17G1081600 Malus domestica HOM05D002479 ORTHO05D002675 7.8e-06 57.4 136 25.7
RcHm_v2.0_Chr2g0162121 Rosa chinensis HOM05D002479 ORTHO05D002675 7.8e-06 57.4 136 25.7


User provided reference genes

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