Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 5.5e-278 960.3 477 100.0
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 1.6e-277 958.7 477 99.8
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 1.2e-272 942.6 478 98.5
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 1.2e-272 942.6 478 98.5
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 7.8e-272 939.9 483 97.3
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 9.2e-265 916.4 477 94.5
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 9.5e-254 879.8 482 89.8
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 4.0e-252 874.4 479 89.8
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 1.9e-249 865.5 479 89.6
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 2.1e-248 862.1 479 89.6
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 3.5e-248 861.3 477 89.5
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 7.3e-246 853.6 480 87.5
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 6.8e-244 847.0 477 88.5
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 9.9e-243 843.2 477 88.1
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 6.4e-242 840.5 478 88.1
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 3.0e-239 831.6 479 84.3
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 4.0e-236 821.2 479 82.0
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 4.9e-234 814.3 479 83.5
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 4.9e-234 814.3 477 82.6
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 4.2e-225 784.6 479 80.2
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 8.2e-213 743.8 477 74.0
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 1.2e-211 740.0 474 75.7
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 1.3e-210 736.5 473 73.6
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 2.2e-210 735.7 475 73.7
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 1.4e-209 733.0 475 73.9
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.6e-208 729.6 475 74.1
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 1.6e-208 729.6 477 73.0
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 2.7e-208 728.8 475 74.1
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 6.1e-208 727.6 474 73.2
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 2.3e-207 725.7 475 73.5
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 3.0e-207 725.3 477 72.5
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 5.1e-207 724.5 475 72.4
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 6.7e-207 724.2 475 73.1
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 1.9e-206 722.6 473 72.9
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 3.3e-206 721.8 475 72.2
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 4.3e-206 721.5 479 72.9
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 3.1e-204 715.3 475 72.6
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 9.0e-204 713.8 478 72.6
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 2.0e-203 712.6 475 72.6
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 2.0e-203 712.6 477 70.0
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 2.6e-203 712.2 475 72.4
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 2.6e-203 712.2 477 72.5
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 3.4e-203 711.8 477 70.9
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 5.9e-203 711.1 474 71.7
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 1.3e-202 709.9 468 72.2
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 2.2e-202 709.1 473 71.5
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 3.8e-202 708.4 476 71.4
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 8.5e-202 707.2 498 70.5
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 8.5e-202 707.2 478 70.3
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 1.9e-201 706.1 473 71.2
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 2.1e-200 702.6 477 72.3
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 3.6e-200 701.8 475 72.2
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 6.1e-200 701.0 476 71.6
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 6.1e-200 701.0 473 71.2
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 6.1e-200 701.0 475 70.1
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 7.9e-200 700.7 475 70.5
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 1.0e-199 700.3 474 70.7
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 1.4e-199 699.9 478 70.9
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 1.8e-199 699.5 463 72.8
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 6.7e-199 697.6 478 69.5
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 1.5e-198 696.4 491 68.8
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 3.3e-198 695.3 472 69.9
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 4.3e-198 694.9 467 71.3
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 5.7e-198 694.5 475 70.9
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 5.7e-198 694.5 490 69.2
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 7.4e-198 694.1 510 66.5
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.3e-197 693.3 474 69.8
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 2.2e-197 692.6 477 69.6
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 2.8e-197 692.2 476 69.3
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 8.2e-197 690.6 487 70.0
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 1.4e-196 689.9 482 68.5
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 2.4e-196 689.1 471 71.8
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 3.1e-196 688.7 502 67.1
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 3.1e-196 688.7 476 69.1
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 2.2e-194 682.6 502 66.9
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 2.2e-194 682.6 472 71.0
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 5.0e-194 681.4 513 65.1
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 1.1e-193 680.2 486 68.1
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 1.1e-193 680.2 539 64.6
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 3.2e-193 678.7 489 67.1
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 3.6e-192 675.2 484 68.4
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 4.7e-192 674.9 481 68.4
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 6.7e-191 671.0 468 69.7
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 4.4e-190 668.3 476 68.7
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 4.4e-190 668.3 476 68.7
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 4.4e-190 668.3 458 70.3
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 7.4e-190 667.5 473 67.7
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 9.7e-190 667.2 503 64.2
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.2e-189 666.0 474 67.5
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 2.8e-189 665.6 478 65.9
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 3.7e-189 665.2 474 68.4
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.7e-189 665.2 476 68.3
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 4.8e-189 664.8 466 67.8
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 6.3e-189 664.5 472 68.4
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 1.1e-188 663.7 469 68.4
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 1.1e-188 663.7 489 66.3
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 1.8e-188 662.9 474 66.7
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 2.4e-188 662.5 460 69.1
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 4.1e-188 661.8 473 68.9
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 1.2e-187 660.2 462 67.7
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 5.9e-187 657.9 473 68.5
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 7.7e-187 657.5 471 68.8
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 1.0e-186 657.1 473 66.6
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 2.2e-186 656.0 475 67.4
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 3.2e-185 652.1 457 69.6
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 4.2e-185 651.7 460 68.7
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.4e-183 646.7 476 67.2
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 1.8e-183 646.4 465 68.2
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 7.5e-182 641.0 468 67.7
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 1.2e-179 633.6 617 53.2
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 8.5e-178 627.5 471 64.5
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 3.1e-172 609.0 515 61.7
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.2e-168 597.0 462 62.3
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 3.4e-166 589.0 473 63.2
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 1.4e-164 583.6 471 62.6
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 4.4e-158 562.0 363 74.7
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 1.2e-155 553.9 462 59.5
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 7.8e-155 551.2 366 71.9
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 7.3e-153 544.7 390 67.7
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 2.4e-148 529.6 475 57.3
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 3.9e-146 522.3 467 55.2
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 4.4e-142 508.8 361 69.3
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 5.4e-140 501.9 461 55.3
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 4.6e-139 498.8 486 56.2
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 6.6e-138 495.0 483 53.6
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 2.9e-133 479.6 359 66.3
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 2.4e-132 476.5 326 71.2
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 3.2e-132 476.1 379 64.6
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 2.4e-124 449.9 325 66.2
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.7e-117 427.2 289 69.2
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 1.3e-109 401.0 281 67.3
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 1.2e-107 394.4 472 46.2
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 1.0e-106 391.3 483 46.4
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 1.3e-101 374.4 282 64.2
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 6.0e-99 365.5 235 73.2
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 5.7e-97 359.0 219 76.3
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 5.3e-95 352.4 213 78.4
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 5.9e-94 349.0 217 75.6
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 1.7e-93 347.4 242 68.6
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 7.2e-92 342.0 233 70.4
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.3e-90 337.0 238 69.3
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 2.4e-87 327.0 236 64.8
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 5.0e-85 319.3 454 40.7
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 1.1e-84 318.2 260 60.0
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 4.5e-78 296.2 466 36.7
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 6.5e-77 292.4 200 68.0
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.6e-75 287.7 185 75.7
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 4.8e-72 276.2 271 50.2
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 3.1e-63 246.9 169 69.2
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 2.7e-62 243.8 280 50.4
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 3.6e-59 233.4 184 65.2
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 6.1e-59 232.6 491 34.0
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.0e-53 215.3 278 47.8
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 3.8e-53 213.4 152 65.1
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 2.5e-52 210.7 140 71.4
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 1.6e-51 208.0 153 71.2
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 1.5e-44 184.9 329 41.9
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 9.5e-44 182.2 327 41.3
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 1.2e-43 181.8 114 75.4
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 3.6e-43 180.3 125 65.6
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 4.4e-41 173.3 98 82.7
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 2.9e-40 170.6 124 65.3
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 3.3e-36 157.1 135 53.3
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 7.8e-30 136.0 88 72.7
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 1.7e-29 134.8 95 66.3
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 8.6e-29 132.5 76 78.9
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 7.3e-28 129.4 102 65.7
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.2e-27 128.6 77 81.8
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 1.4e-26 125.2 145 48.3
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 4.0e-26 123.6 80 70.0
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 1.6e-22 111.7 64 76.6
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 6.6e-21 106.3 63 77.8
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 1.1e-20 105.5 61 78.7
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 7.3e-20 102.8 77 64.9
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 9.5e-20 102.4 94 51.1
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 1.4e-18 98.6 80 61.2
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 4.0e-18 97.1 81 48.1
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 7.6e-17 92.8 86 51.2
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 1.1e-15 89.0 84 51.2
BcaC01g04986 Brassica carinata HOM05D002285 ORTHO05D004192 1.3e-13 82.0 48 79.2
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.9e-13 80.5 164 37.8
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 1.2e-11 75.5 64 53.1
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 1.1e-10 72.4 51 60.8
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 5.2e-10 70.1 111 42.3
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 9.0e-10 69.3 48 70.8
C06p44380 Brassica napus HOM05D002285 ORTHO05D004192 5.8e-09 66.6 39 79.5
SMO164G0195 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.9e-07 61.6 156 34.0


User provided reference genes

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