Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 2.5e-311 1071.2 524 100.0
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 2.5e-311 1071.2 524 100.0
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 4.3e-308 1060.4 524 98.9
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 3.7e-307 1057.4 524 98.5
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 3.7e-307 1057.4 524 98.5
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 3.7e-307 1057.4 524 98.5
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 1.1e-298 1029.2 524 95.6
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 3.1e-298 1027.7 524 95.4
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 2.5e-292 1008.1 515 95.9
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 8.2e-291 1003.0 527 92.6
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 3.0e-285 984.6 528 90.2
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 3.3e-284 981.1 525 90.9
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 6.5e-280 966.8 525 89.1
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 9.4e-279 963.0 524 89.1
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 2.7e-278 961.4 509 90.8
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 5.7e-276 953.7 525 88.2
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 1.4e-274 949.1 525 88.8
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 1.4e-274 949.1 525 88.8
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 1.2e-273 946.0 532 86.5
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 1.2e-273 946.0 524 87.4
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 4.5e-273 944.1 529 87.0
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 5.9e-273 943.7 523 87.0
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 5.9e-273 943.7 524 87.4
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.0e-272 943.0 524 87.8
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 1.0e-272 943.0 524 87.8
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 2.9e-272 941.4 520 87.9
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 4.2e-271 937.6 524 86.6
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 4.2e-271 937.6 524 87.4
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 5.5e-271 937.2 525 87.0
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 9.4e-271 936.4 521 87.9
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 9.4e-271 936.4 521 87.9
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 9.4e-271 936.4 524 86.8
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 2.1e-270 935.3 524 86.5
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 3.6e-270 934.5 525 86.5
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 1.0e-269 932.9 522 86.4
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 1.0e-269 932.9 526 86.3
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 2.3e-269 931.8 524 85.7
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 2.3e-269 931.8 513 87.9
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 3.0e-269 931.4 525 85.9
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 4.0e-269 931.0 509 88.2
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 5.2e-269 930.6 524 86.1
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 6.8e-269 930.2 524 85.9
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 8.8e-269 929.9 524 86.1
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 1.2e-268 929.5 513 87.5
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 1.5e-268 929.1 507 88.6
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 1.5e-268 929.1 524 86.6
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 2.0e-268 928.7 526 85.6
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 2.6e-268 928.3 524 85.5
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 1.3e-267 926.0 523 86.4
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 1.7e-267 925.6 525 85.7
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 2.2e-267 925.2 524 85.5
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 2.2e-267 925.2 529 85.8
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 3.7e-267 924.5 524 85.1
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 4.8e-267 924.1 529 86.0
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 6.3e-267 923.7 527 85.0
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 8.3e-267 923.3 527 85.4
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 1.1e-266 922.9 527 85.0
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 1.1e-266 922.9 514 87.4
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 1.8e-266 922.2 522 85.4
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 2.4e-266 921.8 526 84.2
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 2.4e-266 921.8 524 85.3
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 3.1e-266 921.4 527 84.4
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 5.4e-266 920.6 527 84.6
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 1.2e-265 919.5 527 84.4
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 3.5e-265 917.9 527 84.4
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 7.7e-265 916.8 526 84.4
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 1.0e-264 916.4 564 80.7
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 3.8e-264 914.4 513 86.9
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 5.0e-264 914.1 510 86.3
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 6.5e-264 913.7 555 81.4
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 3.2e-263 911.4 521 85.8
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 4.2e-263 911.0 527 83.1
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 9.4e-263 909.8 498 87.3
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 2.1e-262 908.7 513 85.2
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 2.1e-262 908.7 517 85.5
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 2.1e-262 908.7 521 84.8
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 2.7e-262 908.3 521 84.5
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 4.7e-262 907.5 515 84.7
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 4.7e-262 907.5 515 84.7
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 8.0e-262 906.7 515 84.7
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 1.8e-261 905.6 524 83.2
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 5.2e-261 904.0 509 85.9
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 6.8e-261 903.7 501 85.6
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 1.2e-260 902.9 525 83.0
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 1.2e-260 902.9 528 82.6
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 1.5e-260 902.5 512 85.7
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 3.4e-260 901.4 526 82.9
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 5.7e-260 900.6 504 86.5
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 7.5e-260 900.2 532 81.2
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 1.3e-259 899.4 521 84.1
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 1.7e-259 899.0 520 84.0
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 2.2e-259 898.7 512 84.2
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 2.8e-259 898.3 521 83.9
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 2.8e-259 898.3 523 84.1
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 6.3e-259 897.1 501 85.6
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 1.1e-258 896.3 533 82.0
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 4.5e-257 891.0 532 81.0
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 4.5e-257 891.0 548 79.6
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 2.5e-255 885.2 522 82.0
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 6.1e-254 880.6 522 81.2
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 1.5e-252 875.9 524 81.5
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 9.2e-250 866.7 513 80.3
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 5.0e-248 860.9 520 78.1
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 1.1e-247 859.8 521 78.3
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 2.3e-245 852.0 524 83.0
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 2.9e-243 845.1 525 82.9
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 4.9e-243 844.3 564 73.9
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 1.1e-242 843.2 528 74.4
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 5.0e-240 834.3 528 77.7
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 4.7e-238 827.8 515 77.7
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 2.2e-235 818.9 528 72.9
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 3.1e-229 798.5 499 75.2
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 2.2e-227 792.3 500 75.2
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 4.1e-226 788.1 412 93.0
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 4.6e-225 784.6 508 72.0
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 1.3e-224 783.1 520 69.8
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 6.6e-224 780.8 501 73.9
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 1.2e-222 776.5 519 69.7
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 1.1e-221 773.5 473 81.8
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 1.1e-221 773.5 519 69.2
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 1.6e-217 759.6 523 67.5
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 8.1e-214 747.3 519 69.4
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 1.3e-208 729.9 524 72.1
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 1.7e-203 713.0 491 66.8
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 8.7e-200 700.7 524 69.5
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 7.4e-191 671.0 379 85.5
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 1.7e-187 659.8 529 59.4
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 2.9e-187 659.1 502 63.7
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 4.5e-180 635.2 419 77.6
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 5.9e-180 634.8 346 89.6
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 4.8e-174 615.1 344 86.3
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 3.4e-172 609.0 357 86.3
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 1.0e-155 554.3 500 58.6
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 2.7e-153 546.2 491 52.5
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 6.3e-150 535.0 356 77.8
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 5.0e-147 525.4 292 85.3
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 1.5e-146 523.9 294 85.4
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 5.2e-136 488.8 275 86.2
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 2.6e-135 486.5 510 50.6
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 5.4e-133 478.8 285 85.3
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 2.3e-128 463.4 502 48.8
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 2.4e-93 347.1 198 84.3
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 4.2e-85 319.7 409 40.8
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 9.1e-64 248.8 325 45.8
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 2.0e-63 247.7 398 41.0
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 2.3e-51 207.6 120 81.7
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 3.6e-44 183.7 93 95.7
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 1.7e-33 148.3 93 75.3
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 2.9e-30 137.5 79 79.7
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 9.5e-29 132.5 79 79.7
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 1.3e-22 112.1 68 72.1
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 4.6e-15 87.0 72 62.5
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 5.6e-13 80.1 125 41.6
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 9.8e-10 69.3 48 62.5
RcHm_v2.0_Chr6g0279321 Rosa chinensis HOM05D004668 ORTHO05D000955 1.3e-06 58.9 35 74.3


User provided reference genes

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