Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p32610 Brassica napus HOM05D007847 ORTHO05D009946 6.5e-176 620.5 296 100.0
BraA06t26189Z Brassica rapa HOM05D007847 ORTHO05D009946 1.4e-170 602.8 296 96.6
C03p59920 Brassica napus HOM05D007847 ORTHO05D009946 6.1e-166 587.4 294 94.9
BolC3t18257H Brassica oleracea HOM05D007847 ORTHO05D009946 6.1e-166 587.4 294 94.9
Thhalv10004606m.g Eutrema salsugineum HOM05D007847 ORTHO05D009946 3.2e-151 538.5 295 85.4
Carub.0008s2664 Capsella rubella HOM05D007847 ORTHO05D009946 4.1e-146 521.5 289 84.8
AL8G43460 Arabidopsis lyrata HOM05D007847 ORTHO05D009946 4.5e-145 518.1 289 84.1
BcaC01g02838 Brassica carinata HOM05D007847 ORTHO05D009946 6.1e-142 507.7 294 84.4
THA.LOC104819277 Tarenaya hassleriana HOM05D007847 ORTHO05D009946 1.2e-129 466.8 294 74.1
QL06p038286 Quercus lobata HOM05D007847 ORTHO05D009946 6.0e-113 411.4 290 65.9
CiPaw.08G148900 Carya illinoinensis HOM05D007847 ORTHO05D009946 2.8e-110 402.5 292 63.4
Manes.13G107200 Manihot esculenta HOM05D007847 ORTHO05D009946 1.1e-109 400.6 292 64.7
AT5G65740 Arabidopsis thaliana HOM05D007847 ORTHO05D009946 1.7e-107 393.3 215 85.6
RcHm_v2.0_Chr2g0109231 Rosa chinensis HOM05D007847 ORTHO05D009946 2.9e-107 392.5 292 63.0
CARHR279740 Cardamine hirsuta HOM05D007847 ORTHO05D009946 4.9e-107 391.7 223 83.0
Duzib264G0083 Durio zibethinus HOM05D007847 ORTHO05D009946 4.9e-107 391.7 290 62.4
MD02G1192700 Malus domestica HOM05D007847 ORTHO05D009946 3.2e-106 389.0 288 63.9
Ciclev10026132m.g Citrus clementina HOM05D007847 ORTHO05D009946 7.1e-106 387.9 291 61.2
Haze_03966 Corylus avellana HOM05D007847 ORTHO05D009946 2.7e-105 386.0 296 62.5
Dinv26974 Davidia involucrata HOM05D007847 ORTHO05D009946 2.7e-105 386.0 292 62.0
CSS0008963 Camellia sinensis var. sinensis HOM05D007847 ORTHO05D009946 1.0e-104 384.0 290 62.8
Gorai.003G033500 Gossypium raimondii HOM05D007847 ORTHO05D009946 3.0e-104 382.5 289 60.9
CSS0006637 Camellia sinensis var. sinensis HOM05D007847 ORTHO05D009946 3.9e-104 382.1 290 62.8
Nn5g30695 Nelumbo nucifera HOM05D007847 ORTHO05D009946 6.6e-104 381.3 287 60.3
FvH4_1g18540 Fragaria vesca HOM05D007847 ORTHO05D009946 7.3e-103 377.9 292 61.3
Cc07_g07550 Coffea canephora HOM05D007847 ORTHO05D009946 1.6e-102 376.7 285 60.4
TWI77G0524 Tripterygium wilfordii HOM05D007847 ORTHO05D009946 1.6e-102 376.7 293 60.1
TAR381G1308 Trochodendron aralioides HOM05D007847 ORTHO05D009946 2.1e-102 376.3 287 62.4
FAN23G2885 Fragaria x ananassa HOM05D007847 ORTHO05D009946 8.1e-102 374.4 300 59.7
FAN19G2742 Fragaria x ananassa HOM05D007847 ORTHO05D009946 2.3e-101 372.9 294 60.5
CANSAT01G1865 Cannabis sativa HOM05D007847 ORTHO05D009946 1.2e-100 370.5 287 63.8
Gohir.D03G032000 Gossypium hirsutum HOM05D007847 ORTHO05D009946 1.5e-100 370.2 289 59.9
Aqoxy6G02972 Aquilegia oxysepala HOM05D007847 ORTHO05D009946 4.4e-100 368.6 285 59.3
Migut.H00314 Erythranthe guttata HOM05D007847 ORTHO05D009946 7.6e-100 367.9 288 57.6
ECA238G4198 Erigeron canadensis HOM05D007847 ORTHO05D009946 2.9e-99 365.9 288 60.1
Sabra07G0006500 Salix brachista HOM05D007847 ORTHO05D009946 3.8e-99 365.5 271 60.9
Solyc03g043870.3 Solanum lycopersicum HOM05D007847 ORTHO05D009946 3.8e-99 365.5 284 60.6
FAN28G0215 Fragaria x ananassa HOM05D007847 ORTHO05D009946 4.9e-99 365.2 303 58.7
Sopen03g007680 Solanum pennellii HOM05D007847 ORTHO05D009946 8.4e-99 364.4 288 59.4
Actinidia11949 Actinidia chinensis HOM05D007847 ORTHO05D009946 5.4e-98 361.7 288 60.1
Sc22g0002130 Simmondsia chinensis HOM05D007847 ORTHO05D009946 3.0e-96 355.9 294 58.2
HanXRQChr14g0447671 Helianthus annuus HOM05D007847 ORTHO05D009946 1.1e-95 354.0 279 59.1
PSO541G2530 Papaver somniferum HOM05D007847 ORTHO05D009946 1.1e-95 354.0 290 58.3
DCAR_010781 Daucus carota HOM05D007847 ORTHO05D009946 4.3e-95 352.1 270 59.6
PSO675G2957 Papaver somniferum HOM05D007847 ORTHO05D009946 1.8e-93 346.7 285 57.2
Thecc.01G078900 Theobroma cacao HOM05D007847 ORTHO05D009946 5.8e-92 341.7 291 56.7
Peaxi162Scf00118g01311 Petunia axillaris HOM05D007847 ORTHO05D009946 7.6e-92 341.3 274 57.7
Gohir.A02G148500 Gossypium hirsutum HOM05D007847 ORTHO05D009946 1.7e-91 340.1 289 56.4
Atru.chr3.1082 Acer truncatum HOM05D007847 ORTHO05D009946 2.2e-91 339.7 246 61.8
Prupe.6G213700 Prunus persica HOM05D007847 ORTHO05D009946 1.1e-90 337.4 284 59.9
PGR102G2702 Punica granatum HOM05D007847 ORTHO05D009946 1.9e-90 336.7 293 53.2
MBI16_g08505_MAGBIO Magnolia biondii HOM05D007847 ORTHO05D009946 2.1e-89 333.2 281 55.5
Oeu013362.2 Olea europaea HOM05D007847 ORTHO05D009946 2.1e-89 333.2 267 57.7
Cfa006792 Carpinus fangiana HOM05D007847 ORTHO05D009946 5.1e-88 328.6 237 63.3
Os03g0726900 Oryza sativa ssp. japonica HOM05D007847 ORTHO05D009946 4.3e-87 325.5 281 55.5
Zm00001eb215660 Zea mays HOM05D007847 ORTHO05D009946 5.6e-87 325.1 280 55.0
Potri.007G008300 Populus trichocarpa HOM05D007847 ORTHO05D009946 6.9e-85 318.2 238 59.7
Nitab4.5_0005210g0020 Nicotiana tabacum HOM05D007847 ORTHO05D009946 1.2e-84 317.4 275 57.1
ATR0629G045 Amborella trichopoda HOM05D007847 ORTHO05D009946 4.9e-83 312.0 284 50.7
FAN26G2270 Fragaria x ananassa HOM05D007847 ORTHO05D009946 3.9e-80 302.4 323 48.9
COL.COLO4_11640 Corchorus olitorius HOM05D007847 ORTHO05D009946 1.1e-79 300.8 271 55.0
Nitab4.5_0002639g0020 Nicotiana tabacum HOM05D007847 ORTHO05D009946 4.3e-71 272.3 242 55.0
SEGI_26913 Sequoiadendron giganteum HOM05D007847 ORTHO05D009946 1.3e-70 270.8 275 46.5
Eucgr.F02827 Eucalyptus grandis HOM05D007847 ORTHO05D009946 6.5e-67 258.5 285 47.7
MSTRG.2798 Avicennia marina HOM05D007847 ORTHO05D009946 2.7e-65 253.1 224 54.9
Lj4C169G8 Lonicera japonica HOM05D007847 ORTHO05D009946 6.3e-62 241.9 288 46.5
Cpa.g.sc129.54 Carica papaya HOM05D007847 ORTHO05D009946 2.2e-59 233.4 226 53.1
SGA_v2.0_scaffold121G33081 Striga asiatica HOM05D007847 ORTHO05D009946 1.1e-58 231.1 370 36.2
Pp3c23_15090 Physcomitrium patens HOM05D007847 ORTHO05D009946 1.5e-55 220.7 274 38.3
HPP92_003710 Vanilla planifolia HOM05D007847 ORTHO05D009946 5.7e-55 218.8 215 49.8
Lsat_1_v5_gn_2_80401 Lactuca sativa HOM05D007847 ORTHO05D009946 1.6e-54 217.2 183 53.6
AagrBONN_evm.TU.Sc2ySwM_362.720 Anthoceros agrestis HOM05D007847 ORTHO05D009946 6.3e-54 215.3 283 38.9
Mapoly0084s0053 Marchantia polymorpha HOM05D007847 ORTHO05D009946 1.8e-53 213.8 276 37.0
PGSC0003DMG400017101 Solanum tuberosum HOM05D007847 ORTHO05D009946 1.1e-45 188.0 230 44.8
MD15G1303100 Malus domestica HOM05D007847 ORTHO05D009946 1.3e-35 154.5 125 59.2
MD15G1303200 Malus domestica HOM05D007847 ORTHO05D009946 1.6e-33 147.5 110 64.5
CAN.G82.24 Capsicum annuum HOM05D007847 ORTHO05D009946 6.1e-33 145.6 109 61.5
Sp2g28840 Schrenkiella parvula HOM05D007847 ORTHO05D009946 1.2e-31 141.4 70 90.0
Cre03.g204801 Chlamydomonas reinhardtii HOM05D007847 ORTHO05D009946 1.2e-20 104.8 261 28.7
Actinidia36408 Actinidia chinensis HOM05D007847 ORTHO05D009946 6.5e-19 99.0 184 35.3
CDE02G3555 Ceratophyllum demersum HOM05D007847 ORTHO05D009946 2.2e-14 84.0 60 60.0


User provided reference genes

Program Settings