Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p31380 Brassica napus HOM05D002254 ORTHO05D005423 2.4e-37 158.3 78 100.0
A09p08760 Brassica napus HOM05D002254 ORTHO05D005423 3.6e-25 117.9 104 63.5
Sp2g27710 Schrenkiella parvula HOM05D002254 ORTHO05D005423 6.1e-25 117.1 104 62.5
BcaB04g19981 Brassica carinata HOM05D002254 ORTHO05D005423 8.0e-25 116.7 104 62.5
BcaC04g23302 Brassica carinata HOM05D002254 ORTHO05D005423 1.0e-24 116.3 104 62.5
C09p09930 Brassica napus HOM05D002254 ORTHO05D005423 1.0e-24 116.3 104 62.5
BolC9t53900H Brassica oleracea HOM05D002254 ORTHO05D005423 1.0e-24 116.3 104 62.5
BraA09t36526Z Brassica rapa HOM05D002254 ORTHO05D005423 1.0e-24 116.3 104 62.5
AT5G64650 Arabidopsis thaliana HOM05D002254 ORTHO05D005423 5.2e-24 114.0 101 63.4
Carub.0008s2544 Capsella rubella HOM05D002254 ORTHO05D005423 5.7e-23 110.5 101 61.4
Aa31LG1G17310 Aethionema arabicum HOM05D002254 ORTHO05D005423 9.8e-23 109.8 101 60.4
AL8G42060 Arabidopsis lyrata HOM05D002254 ORTHO05D005423 9.8e-23 109.8 101 61.4
THA.LOC104799480 Tarenaya hassleriana HOM05D002254 ORTHO05D005423 9.8e-23 109.8 104 58.7
Carub.0006s0818 Capsella rubella HOM05D002254 ORTHO05D005423 1.3e-22 109.4 101 61.4
Aa31LG3G17330 Aethionema arabicum HOM05D002254 ORTHO05D005423 2.8e-22 108.2 101 59.4
Thhalv10014895m.g Eutrema salsugineum HOM05D002254 ORTHO05D005423 6.3e-22 107.1 104 56.7
AL6G20170 Arabidopsis lyrata HOM05D002254 ORTHO05D005423 1.1e-21 106.3 104 57.7
Sc06g0001400 Simmondsia chinensis HOM05D002254 ORTHO05D005423 1.1e-21 106.3 105 58.1
DCAR_001358 Daucus carota HOM05D002254 ORTHO05D005423 1.8e-21 105.5 104 56.7
BcaB01g05660 Brassica carinata HOM05D002254 ORTHO05D005423 2.4e-21 105.1 104 55.8
AT5G09770 Arabidopsis thaliana HOM05D002254 ORTHO05D005423 5.4e-21 104.0 104 56.7
MSTRG.2664 Avicennia marina HOM05D002254 ORTHO05D005423 5.4e-21 104.0 104 55.8
Thhalv10005089m.g Eutrema salsugineum HOM05D002254 ORTHO05D005423 9.1e-21 103.2 108 54.6
Cc07_g18050 Coffea canephora HOM05D002254 ORTHO05D005423 1.2e-20 102.8 104 53.8
Dinv24771 Davidia involucrata HOM05D002254 ORTHO05D005423 1.2e-20 102.8 104 54.8
Dinv30096 Davidia involucrata HOM05D002254 ORTHO05D005423 1.2e-20 102.8 104 54.8
Hma1.2p1_0183F.1_g080930 Hydrangea macrophylla HOM05D002254 ORTHO05D005423 1.2e-20 102.8 104 54.8
BcaB01g05562 Brassica carinata HOM05D002254 ORTHO05D005423 1.6e-20 102.4 104 54.8
C03p04680 Brassica napus HOM05D002254 ORTHO05D005423 1.6e-20 102.4 104 54.8
BolC3t13002H Brassica oleracea HOM05D002254 ORTHO05D005423 1.6e-20 102.4 104 54.8
BraA03t09768Z Brassica rapa HOM05D002254 ORTHO05D005423 1.6e-20 102.4 104 54.8
Lj2A603T35 Lonicera japonica HOM05D002254 ORTHO05D005423 1.6e-20 102.4 101 56.4
BolC3t13004H Brassica oleracea HOM05D002254 ORTHO05D005423 2.0e-20 102.1 105 54.3
Duzib264G0949 Durio zibethinus HOM05D002254 ORTHO05D005423 2.0e-20 102.1 104 54.8
Manes.12G153000 Manihot esculenta HOM05D002254 ORTHO05D005423 2.0e-20 102.1 102 56.9
Potri.005G061700 Populus trichocarpa HOM05D002254 ORTHO05D005423 2.0e-20 102.1 101 56.4
AUR62013095 Chenopodium quinoa HOM05D002254 ORTHO05D005423 2.7e-20 101.7 101 55.4
Gohir.A01G176800 Gossypium hirsutum HOM05D002254 ORTHO05D005423 2.7e-20 101.7 101 57.4
THA.LOC104818462 Tarenaya hassleriana HOM05D002254 ORTHO05D005423 2.7e-20 101.7 103 55.3
Duzib147G0903 Durio zibethinus HOM05D002254 ORTHO05D005423 4.5e-20 100.9 104 53.8
A03p04230 Brassica napus HOM05D002254 ORTHO05D005423 5.9e-20 100.5 101 55.4
Migut.H00743 Erythranthe guttata HOM05D002254 ORTHO05D005423 5.9e-20 100.5 104 53.8
SalBow4G0817 Salvia bowleyana HOM05D002254 ORTHO05D005423 5.9e-20 100.5 104 54.8
ATR0681G323 Amborella trichopoda HOM05D002254 ORTHO05D005423 7.7e-20 100.1 103 53.4
Potri.007G107100 Populus trichocarpa HOM05D002254 ORTHO05D005423 7.7e-20 100.1 101 54.5
Ah.01g009370 Amaranthus hybridus HOM05D002254 ORTHO05D005423 1.0e-19 99.8 101 55.4
CSS0030870 Camellia sinensis var. sinensis HOM05D002254 ORTHO05D005423 1.0e-19 99.8 104 52.9
Nitab4.5_0000250g0020 Nicotiana tabacum HOM05D002254 ORTHO05D005423 1.0e-19 99.8 104 53.8
Nitab4.5_0004141g0030 Nicotiana tabacum HOM05D002254 ORTHO05D005423 1.0e-19 99.8 104 53.8
Oeu000401.1 Olea europaea HOM05D002254 ORTHO05D005423 1.0e-19 99.8 104 53.8
Oeu038989.2 Olea europaea HOM05D002254 ORTHO05D005423 1.0e-19 99.8 104 53.8
GSVIVG01026526001 Vitis vinifera HOM05D002254 ORTHO05D005423 1.0e-19 99.8 101 55.4
COL.COLO4_14017 Corchorus olitorius HOM05D002254 ORTHO05D005423 1.3e-19 99.4 101 54.5
Oeu047679.1 Olea europaea HOM05D002254 ORTHO05D005423 1.3e-19 99.4 104 54.8
Solyc08g067950.3 Solanum lycopersicum HOM05D002254 ORTHO05D005423 1.3e-19 99.4 104 54.8
Sopen08g021870 Solanum pennellii HOM05D002254 ORTHO05D005423 1.3e-19 99.4 104 54.8
Actinidia06650 Actinidia chinensis HOM05D002254 ORTHO05D005423 1.7e-19 99.0 104 52.9
Psat5g056880 Pisum sativum HOM05D002254 ORTHO05D005423 1.7e-19 99.0 104 56.7
CARHR278620 Cardamine hirsuta HOM05D002254 ORTHO05D005423 2.3e-19 98.6 104 54.8
TWI31G0091 Tripterygium wilfordii HOM05D002254 ORTHO05D005423 2.3e-19 98.6 101 54.5
Atru.chr4.828 Acer truncatum HOM05D002254 ORTHO05D005423 2.9e-19 98.2 101 54.5
Gohir.D01G167600 Gossypium hirsutum HOM05D002254 ORTHO05D005423 2.9e-19 98.2 101 55.4
Thecc.01G127100 Theobroma cacao HOM05D002254 ORTHO05D005423 2.9e-19 98.2 104 52.9
vmacro14290 Vaccinium macrocarpon HOM05D002254 ORTHO05D005423 2.9e-19 98.2 104 51.0
AUR62010099 Chenopodium quinoa HOM05D002254 ORTHO05D005423 3.8e-19 97.8 101 54.5
Nn5g28635 Nelumbo nucifera HOM05D002254 ORTHO05D005423 3.8e-19 97.8 101 53.5
QL06p029474 Quercus lobata HOM05D002254 ORTHO05D005423 3.8e-19 97.8 97 55.7
VMungo0647G1804 Vigna mungo HOM05D002254 ORTHO05D005423 3.8e-19 97.8 97 55.7
CAN.G679.3 Capsicum annuum HOM05D002254 ORTHO05D005423 5.0e-19 97.4 104 54.8
Cfa002830 Carpinus fangiana HOM05D002254 ORTHO05D005423 5.0e-19 97.4 97 55.7
Haze_25127 Corylus avellana HOM05D002254 ORTHO05D005423 5.0e-19 97.4 97 55.7
PGSC0003DMG400014486 Solanum tuberosum HOM05D002254 ORTHO05D005423 5.0e-19 97.4 104 53.8
Oeu037798.1 Olea europaea HOM05D002254 ORTHO05D005423 6.6e-19 97.1 101 54.5
CANSAT01G2903 Cannabis sativa HOM05D002254 ORTHO05D005423 8.6e-19 96.7 101 53.5
Eucgr.H04941 Eucalyptus grandis HOM05D002254 ORTHO05D005423 1.1e-18 96.3 104 51.0
Gorai.002G208300 Gossypium raimondii HOM05D002254 ORTHO05D005423 1.1e-18 96.3 106 52.8
Medtr3g095900 Medicago truncatula HOM05D002254 ORTHO05D005423 1.1e-18 96.3 105 54.3
RcHm_v2.0_Chr5g0024011 Rosa chinensis HOM05D002254 ORTHO05D005423 1.1e-18 96.3 102 53.9
FvH4_3g14560 Fragaria vesca HOM05D002254 ORTHO05D005423 1.9e-18 95.5 102 52.9
FAN16G3547 Fragaria x ananassa HOM05D002254 ORTHO05D005423 1.9e-18 95.5 102 52.9
FAN21G0823 Fragaria x ananassa HOM05D002254 ORTHO05D005423 1.9e-18 95.5 102 52.9
TWI75G1050 Tripterygium wilfordii HOM05D002254 ORTHO05D005423 1.9e-18 95.5 101 53.5
TAR381G1435 Trochodendron aralioides HOM05D002254 ORTHO05D005423 1.9e-18 95.5 99 55.6
EL10Ac9g21444 Beta vulgaris HOM05D002254 ORTHO05D005423 2.5e-18 95.1 101 54.5
BraA06t26080Z Brassica rapa HOM05D002254 ORTHO05D005423 2.5e-18 95.1 46 100.0
Glyma.04G214500 Glycine max HOM05D002254 ORTHO05D005423 2.5e-18 95.1 97 54.6
PGR102G3355 Punica granatum HOM05D002254 ORTHO05D005423 2.5e-18 95.1 104 51.0
Sed0005738 Sechium edule HOM05D002254 ORTHO05D005423 2.5e-18 95.1 104 54.8
MD15G1337900 Malus domestica HOM05D002254 ORTHO05D005423 3.3e-18 94.7 99 53.5
Phvul.009G148700 Phaseolus vulgaris HOM05D002254 ORTHO05D005423 3.3e-18 94.7 97 55.7
PSO541G1616 Papaver somniferum HOM05D002254 ORTHO05D005423 4.2e-18 94.4 104 49.0
Peaxi162Scf00105g00116 Petunia axillaris HOM05D002254 ORTHO05D005423 7.2e-18 93.6 104 51.9
Medtr8g103900 Medicago truncatula HOM05D002254 ORTHO05D005423 9.5e-18 93.2 105 52.4
arahy.Tifrunner.gnm1.ann1.FM41R7 Arachis hypogaea HOM05D002254 ORTHO05D005423 1.2e-17 92.8 96 53.1
arahy.Tifrunner.gnm1.ann1.N1TEIX Arachis hypogaea HOM05D002254 ORTHO05D005423 1.2e-17 92.8 96 53.1
Glyma.06G151700 Glycine max HOM05D002254 ORTHO05D005423 1.2e-17 92.8 97 53.6
Lalb_Chr08g0238481 Lupinus albus HOM05D002254 ORTHO05D005423 1.2e-17 92.8 104 52.9
Hund06402 Selenicereus undatus HOM05D002254 ORTHO05D005423 1.2e-17 92.8 104 51.9
TPR.G34646 Trifolium pratense HOM05D002254 ORTHO05D005423 1.2e-17 92.8 104 53.8
arahy.Tifrunner.gnm1.ann1.2KW32D Arachis hypogaea HOM05D002254 ORTHO05D005423 1.6e-17 92.4 96 53.1
FAN11G0976 Fragaria x ananassa HOM05D002254 ORTHO05D005423 1.6e-17 92.4 102 52.0
CsaV3_6G041770 Cucumis sativus L. HOM05D002254 ORTHO05D005423 2.1e-17 92.0 104 52.9
VMungo1309G0562 Vigna mungo HOM05D002254 ORTHO05D005423 2.1e-17 92.0 97 53.6
Ciclev10026667m.g Citrus clementina HOM05D002254 ORTHO05D005423 2.8e-17 91.7 101 49.5
Prupe.6G158000 Prunus persica HOM05D002254 ORTHO05D005423 2.8e-17 91.7 99 53.5
PSO675G8066 Papaver somniferum HOM05D002254 ORTHO05D005423 3.6e-17 91.3 104 48.1
unitig_8.g4580 Utricularia gibba HOM05D002254 ORTHO05D005423 3.6e-17 91.3 105 52.4
Lsat_1_v5_gn_3_37780 Lactuca sativa HOM05D002254 ORTHO05D005423 4.7e-17 90.9 104 51.0
Cpa.g.sc42.118 Carica papaya HOM05D002254 ORTHO05D005423 6.1e-17 90.5 101 52.5
Aqoxy5G00323 Aquilegia oxysepala HOM05D002254 ORTHO05D005423 8.0e-17 90.1 100 51.0
HanXRQChr05g0152951 Helianthus annuus HOM05D002254 ORTHO05D005423 1.0e-16 89.7 104 50.0
HanXRQChr08g0236341 Helianthus annuus HOM05D002254 ORTHO05D005423 1.8e-16 89.0 104 50.0
Sp6g33620 Schrenkiella parvula HOM05D002254 ORTHO05D005423 1.8e-16 89.0 89 55.1
MELO3C008044.2 Cucumis melo HOM05D002254 ORTHO05D005423 2.3e-16 88.6 104 50.0
PGR142G4456 Punica granatum HOM05D002254 ORTHO05D005423 2.3e-16 88.6 104 50.0
Lj1g0024859 Lotus japonicus HOM05D002254 ORTHO05D005423 4.0e-16 87.8 101 50.5
CDE04G0736 Ceratophyllum demersum HOM05D002254 ORTHO05D005423 6.8e-16 87.0 98 51.0
Ca_16929_v3 Cicer arietinum L. HOM05D002254 ORTHO05D005423 8.9e-16 86.7 102 50.0
Zm00001eb368030 Zea mays HOM05D002254 ORTHO05D005423 1.5e-15 85.9 104 47.1
CiPaw.03G128400 Carya illinoinensis HOM05D002254 ORTHO05D005423 2.0e-15 85.5 95 49.5
ECA246G3091 Erigeron canadensis HOM05D002254 ORTHO05D005423 2.0e-15 85.5 104 49.0
C03p61540 Brassica napus HOM05D002254 ORTHO05D005423 2.6e-15 85.1 46 91.3
HPP92_013266 Vanilla planifolia HOM05D002254 ORTHO05D005423 2.6e-15 85.1 103 46.6
HPP92_013271 Vanilla planifolia HOM05D002254 ORTHO05D005423 2.6e-15 85.1 103 46.6
Os01g0839300 Oryza sativa ssp. japonica HOM05D002254 ORTHO05D005423 7.5e-15 83.6 96 47.9
BolC3t18414H Brassica oleracea HOM05D002254 ORTHO05D005423 1.3e-14 82.8 46 89.1
EL10Ac5g11356 Beta vulgaris HOM05D002254 ORTHO05D005423 1.7e-14 82.4 97 51.5
MD01G1012100 Malus domestica HOM05D002254 ORTHO05D005423 4.9e-14 80.9 87 51.7
CARHR203630 Cardamine hirsuta HOM05D002254 ORTHO05D005423 6.3e-14 80.5 61 65.6
EL10Ac5g11449 Beta vulgaris HOM05D002254 ORTHO05D005423 5.4e-13 77.4 97 49.5
ClCG01G015530 Citrullus lanatus HOM05D002254 ORTHO05D005423 3.5e-12 74.7 61 63.9
Sabra05G0051900 Salix brachista HOM05D002254 ORTHO05D005423 3.3e-10 68.2 47 72.3
SEGI_31183 Sequoiadendron giganteum HOM05D002254 ORTHO05D005423 6.2e-09 63.9 96 41.7
Pp3c16_7040 Physcomitrium patens HOM05D002254 ORTHO05D005423 1.4e-08 62.8 94 38.3
CBR_g41367 Chara braunii HOM05D002254 ORTHO05D005423 4.0e-08 61.2 99 39.4
Lalb_Chr11g0068331 Lupinus albus HOM05D002254 ORTHO05D005423 4.0e-08 61.2 48 56.2
MBI10_g06742_MAGBIO Magnolia biondii HOM05D002254 ORTHO05D005423 8.9e-08 60.1 82 43.9
Rhsim10G0136900 Rhododendron simsii HOM05D000987 ORTHO05D000831 8.9e-08 60.1 34 79.4
Mapoly0072s0005 Marchantia polymorpha HOM05D002254 ORTHO05D005423 4.4e-07 57.8 106 34.0


User provided reference genes

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