Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p27240 Brassica napus HOM05D004667 ORTHO05D005522 1.6e-100 369.8 234 100.0
BraA06t25665Z Brassica rapa HOM05D004667 ORTHO05D005522 3.0e-99 365.5 234 98.7
C03p67020 Brassica napus HOM05D004667 ORTHO05D005522 2.3e-96 355.9 235 97.4
BolC3t18977H Brassica oleracea HOM05D004667 ORTHO05D005522 6.8e-96 354.4 235 97.0
BcaC01g02286 Brassica carinata HOM05D004667 ORTHO05D005522 1.5e-95 353.2 235 97.0
BcaB02g10693 Brassica carinata HOM05D004667 ORTHO05D005522 2.0e-87 326.2 237 89.0
Sp5g14280 Schrenkiella parvula HOM05D004667 ORTHO05D005522 2.7e-84 315.8 246 85.0
Thhalv10010670m.g Eutrema salsugineum HOM05D004667 ORTHO05D005522 1.4e-80 303.5 238 83.2
BraA01t02497Z Brassica rapa HOM05D004667 ORTHO05D005522 4.0e-80 302.0 247 80.6
A01p25820 Brassica napus HOM05D004667 ORTHO05D005522 4.5e-79 298.5 247 80.2
Carub.0005s1377 Capsella rubella HOM05D004667 ORTHO05D005522 9.9e-79 297.4 246 79.7
AL5G26930 Arabidopsis lyrata HOM05D004667 ORTHO05D005522 1.3e-78 297.0 247 77.3
CARHR156320 Cardamine hirsuta HOM05D004667 ORTHO05D005522 1.3e-78 297.0 247 80.2
BolC1t03209H Brassica oleracea HOM05D004667 ORTHO05D005522 6.4e-78 294.7 247 81.4
BcaB05g23064 Brassica carinata HOM05D004667 ORTHO05D005522 2.4e-77 292.7 242 81.8
AT3G47640 Arabidopsis thaliana HOM05D004667 ORTHO05D005522 2.7e-76 289.3 243 80.7
Aa31LG4G16380 Aethionema arabicum HOM05D004667 ORTHO05D005522 2.1e-68 263.1 241 72.6
BcaC09g49811 Brassica carinata HOM05D004667 ORTHO05D005522 7.7e-47 191.4 192 74.0
THA.LOC104818253 Tarenaya hassleriana HOM05D004667 ORTHO05D005522 5.0e-46 188.7 243 61.3
C01p32730 Brassica napus HOM05D004667 ORTHO05D005522 3.7e-41 172.6 141 87.9
RcHm_v2.0_Chr7g0181001 Rosa chinensis HOM05D004667 ORTHO05D005522 3.2e-37 159.5 246 41.9
FvH4_5g15171 Fragaria vesca HOM05D004667 ORTHO05D005522 3.0e-35 152.9 247 41.3
Haze_07341 Corylus avellana HOM05D005938 ORTHO05D007654 6.7e-35 151.8 240 50.4
QL10p016532 Quercus lobata HOM05D004667 ORTHO05D005522 1.1e-34 151.0 217 47.0
Duzib084G1199 Durio zibethinus HOM05D004667 ORTHO05D005522 2.6e-34 149.8 245 42.9
Cfa018960 Carpinus fangiana HOM05D004667 ORTHO05D005522 3.3e-34 149.4 231 52.4
MD06G1191600 Malus domestica HOM05D004667 ORTHO05D005522 3.3e-34 149.4 247 41.7
FAN08G0134 Fragaria x ananassa HOM05D004667 ORTHO05D005522 4.4e-34 149.1 248 39.9
Prupe.5G190100 Prunus persica HOM05D004667 ORTHO05D005522 7.4e-34 148.3 247 43.3
Cpa.g.c30141.2 Carica papaya HOM05D004667 ORTHO05D005522 9.7e-34 147.9 239 42.7
Thecc.03G084200 Theobroma cacao HOM05D004667 ORTHO05D005522 1.3e-33 147.5 245 41.2
Ca_21829_v3 Cicer arietinum L. HOM05D004667 ORTHO05D005522 2.8e-33 146.4 235 39.1
Duzib068G0725 Durio zibethinus HOM05D004667 ORTHO05D005522 3.7e-33 146.0 244 46.7
Lj4g0024645 Lotus japonicus HOM05D004667 ORTHO05D005522 6.3e-33 145.2 241 39.4
Duzib205G0185 Durio zibethinus HOM05D004667 ORTHO05D005522 1.1e-32 144.4 241 41.1
Gohir.D11G033900 Gossypium hirsutum HOM05D004667 ORTHO05D005522 7.0e-32 141.7 237 41.4
COL.COLO4_24543 Corchorus olitorius HOM05D004667 ORTHO05D005522 1.2e-31 141.0 246 41.5
Gohir.A11G030611 Gossypium hirsutum HOM05D004667 ORTHO05D005522 1.6e-31 140.6 241 40.7
Manes.14G077100 Manihot esculenta HOM05D004667 ORTHO05D005522 4.5e-31 139.0 235 40.0
Atru.chr9.2269 Acer truncatum HOM05D004667 ORTHO05D005522 5.9e-31 138.7 241 51.9
Eucgr.B00470 Eucalyptus grandis HOM05D004667 ORTHO05D005522 7.7e-31 138.3 238 38.7
MD14G1198000 Malus domestica HOM05D004667 ORTHO05D005522 7.7e-31 138.3 247 39.7
Gorai.007G036700 Gossypium raimondii HOM05D004667 ORTHO05D005522 1.0e-30 137.9 237 40.5
Ciclev10021941m.g Citrus clementina HOM05D004667 ORTHO05D005522 1.3e-30 137.5 247 40.9
MELO3C017166.2 Cucumis melo HOM05D004667 ORTHO05D005522 1.7e-30 137.1 237 40.1
PGR083G2477 Punica granatum HOM05D004667 ORTHO05D005522 1.7e-30 137.1 232 39.7
Potri.003G074400 Populus trichocarpa HOM05D004667 ORTHO05D005522 2.2e-30 136.7 207 45.4
Lalb_Chr07g0177971 Lupinus albus HOM05D004667 ORTHO05D005522 5.0e-30 135.6 236 39.0
TPR.G34729 Trifolium pratense HOM05D004667 ORTHO05D005522 5.0e-30 135.6 243 39.9
TWI15G0884 Tripterygium wilfordii HOM05D004667 ORTHO05D005522 5.0e-30 135.6 240 39.6
ClCG06G016270 Citrullus lanatus HOM05D004667 ORTHO05D005522 1.1e-29 134.4 244 39.3
Medtr4g108360 Medicago truncatula HOM05D004667 ORTHO05D005522 1.1e-29 134.4 234 39.3
Sabra03G0045100 Salix brachista HOM05D004667 ORTHO05D005522 1.9e-29 133.7 207 45.4
arahy.Tifrunner.gnm1.ann1.0RV7R4 Arachis hypogaea HOM05D004667 ORTHO05D005522 2.5e-29 133.3 235 39.1
VMungo1215G1912 Vigna mungo HOM05D004667 ORTHO05D005522 2.5e-29 133.3 237 41.4
arahy.Tifrunner.gnm1.ann1.U816VA Arachis hypogaea HOM05D004667 ORTHO05D005522 3.2e-29 132.9 235 43.8
CiPaw.11G042700 Carya illinoinensis HOM05D004667 ORTHO05D005522 3.2e-29 132.9 225 52.4
CsaV3_1G002260 Cucumis sativus L. HOM05D004667 ORTHO05D005522 3.2e-29 132.9 240 38.8
TWI60G0935 Tripterygium wilfordii HOM05D004667 ORTHO05D005522 3.2e-29 132.9 235 40.4
Potri.015G142700 Populus trichocarpa HOM05D004667 ORTHO05D005522 4.2e-29 132.5 216 42.1
Phvul.003G191000 Phaseolus vulgaris HOM05D004667 ORTHO05D005522 9.4e-29 131.3 235 39.6
Lalb_Chr13g0303301 Lupinus albus HOM05D004667 ORTHO05D005522 1.2e-28 131.0 234 39.7
Psat4g051040 Pisum sativum HOM05D004667 ORTHO05D005522 1.2e-28 131.0 218 40.4
Sed0008118 Sechium edule HOM05D004667 ORTHO05D005522 3.6e-28 129.4 202 41.1
Dinv19946 Davidia involucrata HOM05D004667 ORTHO05D005522 1.8e-27 127.1 228 37.3
CANSAT80G1185 Cannabis sativa HOM05D004667 ORTHO05D005522 3.0e-27 126.3 242 37.6
Glyma.05G027600 Glycine max HOM05D004667 ORTHO05D005522 3.0e-27 126.3 237 38.0
Dinv38692 Davidia involucrata HOM05D004667 ORTHO05D005522 1.2e-26 124.4 216 44.0
Glyma.17G098900 Glycine max HOM05D004667 ORTHO05D005522 1.5e-26 124.0 215 38.6
Hma1.2p1_0735F.1_g210470 Hydrangea macrophylla HOM05D004667 ORTHO05D005522 5.7e-26 122.1 217 37.8
Sc04g0002550 Simmondsia chinensis HOM05D004667 ORTHO05D005522 2.2e-25 120.2 237 39.2
EL10Ac7g16410 Beta vulgaris HOM05D004667 ORTHO05D005522 3.7e-25 119.4 219 45.2
Lj5C112T10 Lonicera japonica HOM05D004667 ORTHO05D005522 4.8e-25 119.0 235 36.6
ECA246G3018 Erigeron canadensis HOM05D004667 ORTHO05D005522 8.2e-25 118.2 206 40.3
Solyc03g116340.3 Solanum lycopersicum HOM05D004667 ORTHO05D005522 8.2e-25 118.2 229 50.2
Rhsim08G0156600 Rhododendron simsii HOM05D004667 ORTHO05D005522 2.4e-24 116.7 216 39.4
A06p19950 Brassica napus HOM05D003537 ORTHO05D004180 3.1e-24 116.3 138 55.8
BraA06t25078Z Brassica rapa HOM05D003537 ORTHO05D004180 3.1e-24 116.3 138 55.8
BcaC01g01787 Brassica carinata HOM05D004667 ORTHO05D032196 4.1e-24 115.9 113 64.6
Sopen03g035270 Solanum pennellii HOM05D004667 ORTHO05D005522 4.1e-24 115.9 229 49.8
PGSC0003DMG400000599 Solanum tuberosum HOM05D004667 ORTHO05D005522 4.1e-24 115.9 210 52.9
CAN.G407.116 Capsicum annuum HOM05D004667 ORTHO05D005522 5.3e-24 115.5 207 53.6
BcaC01g00891 Brassica carinata HOM05D004667 ORTHO05D005522 7.0e-24 115.2 72 83.3
Actinidia04904 Actinidia chinensis HOM05D004667 ORTHO05D005522 1.2e-23 114.4 236 35.2
CSS0005857 Camellia sinensis var. sinensis HOM05D004667 ORTHO05D005522 1.2e-23 114.4 214 38.8
Ah.08g216800 Amaranthus hybridus HOM05D004667 ORTHO05D005522 2.7e-23 113.2 210 40.0
GSVIVG01011386001 Vitis vinifera HOM05D004667 ORTHO05D005522 2.9e-22 109.8 214 34.6
AUR62001482 Chenopodium quinoa HOM05D004667 ORTHO05D005522 3.8e-22 109.4 215 38.6
MSTRG.4419 Avicennia marina HOM05D004667 ORTHO05D005522 1.1e-21 107.8 216 35.6
Peaxi162Scf00274g00834 Petunia axillaris HOM05D004667 ORTHO05D005522 1.9e-21 107.1 232 48.7
BolC3t18707H Brassica oleracea HOM05D004667 ORTHO05D005522 2.5e-21 106.7 72 77.8
HanXRQChr05g0158091 Helianthus annuus HOM05D004667 ORTHO05D005522 2.5e-21 106.7 207 38.6
Nitab4.5_0000026g0120 Nicotiana tabacum HOM05D004667 ORTHO05D005522 3.2e-21 106.3 242 32.6
AUR62009884 Chenopodium quinoa HOM05D004667 ORTHO05D005522 7.2e-21 105.1 213 38.0
Manes.06G094100 Manihot esculenta HOM05D004667 ORTHO05D005522 7.2e-21 105.1 236 43.2
Migut.D01831 Erythranthe guttata HOM05D004667 ORTHO05D005522 1.6e-20 104.0 220 35.9
Phvul.009G188251 Phaseolus vulgaris HOM05D004667 ORTHO05D005522 1.6e-20 104.0 249 34.1
TAR629G0869 Trochodendron aralioides HOM05D000350 ORTHO05D005522 1.6e-20 104.0 247 31.2
Peaxi162Scf00712g00029 Petunia axillaris HOM05D004667 ORTHO05D005522 4.7e-20 102.4 205 35.6
BraA03t15338Z Brassica rapa HOM05D004667 ORTHO05D005522 6.1e-20 102.1 70 78.6
Nn3g17203 Nelumbo nucifera HOM05D004667 ORTHO05D005522 6.1e-20 102.1 232 32.3
Nitab4.5_0014986g0010 Nicotiana tabacum HOM05D004667 ORTHO05D005522 6.1e-20 102.1 229 48.0
Sed0021322 Sechium edule HOM05D004667 ORTHO05D005522 6.1e-20 102.1 241 36.1
Nitab4.5_0000741g0010 Nicotiana tabacum HOM05D004667 ORTHO05D005522 1.0e-19 101.3 242 32.2
Nitab4.5_0002257g0120 Nicotiana tabacum HOM05D004667 ORTHO05D005522 1.0e-19 101.3 215 49.3
TAR371G0790 Trochodendron aralioides HOM05D004667 ORTHO05D005522 1.4e-19 100.9 244 30.7
vmacro17553 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 2.3e-19 100.1 200 35.5
Sabra15G0152700 Salix brachista HOM05D004667 ORTHO05D005522 6.8e-19 98.6 186 40.3
PSO063G1198 Papaver somniferum HOM05D004667 ORTHO05D005522 1.2e-18 97.8 228 34.6
Aqoxy3G03350 Aquilegia oxysepala HOM05D004667 ORTHO05D005522 1.5e-18 97.4 236 32.2
VMungo1309G0024 Vigna mungo HOM05D004667 ORTHO05D005522 2.0e-18 97.1 246 32.1
Hund02659 Selenicereus undatus HOM05D004667 ORTHO05D005522 2.6e-18 96.7 245 32.7
Actinidia37637 Actinidia chinensis HOM05D004667 ORTHO05D005522 4.4e-18 95.9 128 42.2
Cc04_g16930 Coffea canephora HOM05D004667 ORTHO05D005522 4.4e-18 95.9 226 45.6
Nn4g23126 Nelumbo nucifera HOM05D004667 ORTHO05D005522 4.4e-18 95.9 219 32.0
PSO832G1839 Papaver somniferum HOM05D004667 ORTHO05D005522 5.7e-18 95.5 217 35.0
Actinidia02716 Actinidia chinensis HOM05D004667 ORTHO05D005522 7.5e-18 95.1 219 30.6
Lsat_1_v5_gn_5_19381 Lactuca sativa HOM05D000189 ORTHO05D000474 6.3e-17 92.0 93 52.7
GSVIVG01008025001 Vitis vinifera HOM05D004667 ORTHO05D005522 6.3e-17 92.0 124 39.5
Actinidia17543 Actinidia chinensis HOM05D004667 ORTHO05D005522 8.3e-17 91.7 228 30.7
CDE05G2553 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 8.3e-17 91.7 233 30.9
vmacro18196 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 1.4e-16 90.9 213 30.5
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 1.4e-16 90.9 241 32.4
CDE05G0260 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 3.1e-16 89.7 233 30.5
Rhsim08G0068600 Rhododendron simsii HOM05D004667 ORTHO05D005522 5.4e-16 89.0 232 30.6
DCAR_011136 Daucus carota HOM05D004667 ORTHO05D005522 7.0e-16 88.6 217 30.0
MSTRG.3233 Avicennia marina HOM05D004667 ORTHO05D005522 9.1e-16 88.2 230 31.7
C03p71870 Brassica napus HOM05D004667 ORTHO05D032196 1.2e-15 87.8 87 64.4
Hma1.2p1_0449F.1_g155390 Hydrangea macrophylla HOM05D004667 ORTHO05D005522 2.7e-15 86.7 215 28.8
Cc07_g03280 Coffea canephora HOM05D004667 ORTHO05D005522 7.7e-15 85.1 248 29.8
BcaB03g16837 Brassica carinata HOM05D004667 ORTHO05D005522 1.3e-14 84.3 54 83.3
SalBow1G0094 Salvia bowleyana HOM05D004667 ORTHO05D005522 1.3e-14 84.3 233 31.3
MSTRG.23944 Avicennia marina HOM05D004667 ORTHO05D005522 1.7e-14 84.0 221 29.4
MBI02_g23680_MAGBIO Magnolia biondii HOM05D004667 ORTHO05D005522 2.9e-14 83.2 207 31.4
DCAR_021526 Daucus carota HOM05D004667 ORTHO05D005522 3.8e-14 82.8 221 39.8
ECA232G3869 Erigeron canadensis HOM05D004667 ORTHO05D005522 5.0e-14 82.4 211 31.8
Migut.H00911 Erythranthe guttata HOM05D004667 ORTHO05D005522 6.5e-14 82.0 232 29.7
Oeu022621.1 Olea europaea HOM05D004667 ORTHO05D005522 6.5e-14 82.0 190 33.2
Os11g0601700 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 6.5e-14 82.0 93 46.2
BolC3t19480H Brassica oleracea HOM05D004667 ORTHO05D032196 8.6e-14 81.6 84 61.9
CDE09G1261 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 1.1e-13 81.3 206 38.8
ATR0564G258 Amborella trichopoda HOM05D004667 ORTHO05D005522 5.5e-13 79.0 213 28.2
Os07g0628500 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 2.8e-12 76.6 67 58.2
C08p25720 Brassica napus HOM05D004667 ORTHO05D005522 1.0e-11 74.7 45 84.4
BolC8t50187H Brassica oleracea HOM05D004667 ORTHO05D005522 1.0e-11 74.7 45 84.4
Lsat_1_v5_gn_4_178121 Lactuca sativa HOM05D004667 ORTHO05D005522 1.4e-11 74.3 228 28.1
Zm00001eb018460 Zea mays HOM05D004667 ORTHO05D005522 3.0e-11 73.2 95 43.2
Os03g0379300 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 4.0e-11 72.8 86 38.4
SGA_v2.0_scaffold59G20685 Striga asiatica HOM05D004667 ORTHO05D005522 4.0e-11 72.8 235 26.0
Oeu021379.1 Olea europaea HOM05D004667 ORTHO05D005522 7.5e-10 68.6 191 34.6
BolC9t55593H Brassica oleracea HOM05D004667 ORTHO05D005522 2.2e-09 67.0 60 66.7
BcaC01g02459 Brassica carinata HOM05D004667 ORTHO05D005522 1.4e-08 64.3 39 79.5
Oeu016168.2 Olea europaea HOM05D004667 ORTHO05D005522 1.4e-08 64.3 56 53.6
HanXRQChr09g0265291 Helianthus annuus HOM05D004667 ORTHO05D005522 3.1e-08 63.2 239 28.9
BolC3t19479H Brassica oleracea HOM05D004667 ORTHO05D005522 4.5e-07 59.3 35 77.1
Lsat_1_v5_gn_4_108900 Lactuca sativa HOM05D000650 ORTHO05D000735 1.7e-06 57.4 56 46.4
BcaNung03021 Brassica carinata HOM05D003097 ORTHO05D003437 2.3e-06 57.0 62 41.9
C07p61510 Brassica napus HOM05D003097 ORTHO05D003437 2.3e-06 57.0 62 41.9
BolC7t46575H Brassica oleracea HOM05D003097 ORTHO05D003437 2.3e-06 57.0 62 41.9
BraA03t15471Z Brassica rapa HOM05D003097 ORTHO05D003437 2.3e-06 57.0 62 41.9
Potri.009G129600 Populus trichocarpa HOM05D003097 ORTHO05D003437 2.3e-06 57.0 83 33.7
Zm00001eb328250 Zea mays HOM05D004667 ORTHO05D005522 5.0e-06 55.8 195 28.2
BraA01t00253Z Brassica rapa HOM05D003097 ORTHO05D003437 8.6e-06 55.1 64 35.9


User provided reference genes

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