Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p21670 Brassica napus HOM05D001100 ORTHO05D001503 1.1e-59 233.4 143 100.0
BraA06t25256Z Brassica rapa HOM05D001100 ORTHO05D001503 3.6e-47 191.8 127 96.1
Thhalv10004312m.g Eutrema salsugineum HOM05D001100 ORTHO05D001503 2.0e-29 132.9 83 88.0
Sp2g27050 Schrenkiella parvula HOM05D001100 ORTHO05D001503 4.4e-29 131.7 83 86.7
A09p08500 Brassica napus HOM05D001100 ORTHO05D001503 5.8e-29 131.3 82 89.0
BraA09t36499Z Brassica rapa HOM05D001100 ORTHO05D001503 5.8e-29 131.3 82 89.0
A06p30600 Brassica napus HOM05D001100 ORTHO05D001503 7.5e-29 131.0 83 85.5
C03p62360 Brassica napus HOM05D001100 ORTHO05D001503 9.8e-29 130.6 82 86.6
C09p09630 Brassica napus HOM05D001100 ORTHO05D001503 1.3e-28 130.2 83 89.2
BolC9t53874H Brassica oleracea HOM05D001100 ORTHO05D001503 1.3e-28 130.2 83 89.2
AT5G63980 Arabidopsis thaliana HOM05D001100 ORTHO05D001503 8.3e-28 127.5 82 85.4
AL8G41240 Arabidopsis lyrata HOM05D001100 ORTHO05D001503 2.4e-27 125.9 82 84.1
Carub.0008s2476 Capsella rubella HOM05D001100 ORTHO05D001503 9.2e-27 124.0 82 82.9
Aa31LG1G17920 Aethionema arabicum HOM05D001100 ORTHO05D001503 1.6e-26 123.2 82 81.7
CARHR277900 Cardamine hirsuta HOM05D001100 ORTHO05D001503 7.8e-26 120.9 82 80.5
Manes.12G156600 Manihot esculenta HOM05D001100 ORTHO05D001503 7.3e-24 114.4 82 76.8
THA.LOC104800114 Tarenaya hassleriana HOM05D001100 ORTHO05D001503 1.6e-23 113.2 82 73.2
Dinv07109 Davidia involucrata HOM05D001100 ORTHO05D001503 2.8e-23 112.5 81 75.3
TAR381G0336 Trochodendron aralioides HOM05D001100 ORTHO05D001503 3.6e-23 112.1 81 75.3
Cpa.g.sc42.165 Carica papaya HOM05D001100 ORTHO05D001503 4.7e-23 111.7 81 72.8
Hma1.2p1_0539F.1_g174620 Hydrangea macrophylla HOM05D001100 ORTHO05D001503 6.2e-23 111.3 81 74.1
AUR62017891 Chenopodium quinoa HOM05D001100 ORTHO05D001503 8.0e-23 110.9 81 75.3
TPR.G2929 Trifolium pratense HOM05D001100 ORTHO05D001503 8.0e-23 110.9 81 76.5
arahy.Tifrunner.gnm1.ann1.LZ18QW Arachis hypogaea HOM05D001100 ORTHO05D001503 1.1e-22 110.5 82 73.2
arahy.Tifrunner.gnm1.ann1.Z42PVZ Arachis hypogaea HOM05D001100 ORTHO05D001503 1.1e-22 110.5 82 73.2
TWI79G1082 Tripterygium wilfordii HOM05D001100 ORTHO05D001503 1.1e-22 110.5 81 74.1
Glyma.08G086800 Glycine max HOM05D001100 ORTHO05D001503 1.4e-22 110.2 81 74.1
GSVIVG01026471001 Vitis vinifera HOM05D001100 ORTHO05D001503 1.4e-22 110.2 80 76.2
AUR62003581 Chenopodium quinoa HOM05D001100 ORTHO05D001503 1.8e-22 109.8 81 74.1
AUR62043727 Chenopodium quinoa HOM05D001100 ORTHO05D001503 1.8e-22 109.8 81 74.1
Ciclev10001463m.g Citrus clementina HOM05D001100 ORTHO05D001503 1.8e-22 109.8 81 74.1
Dinv24378 Davidia involucrata HOM05D001100 ORTHO05D001503 1.8e-22 109.8 81 74.1
Atru.chr4.879 Acer truncatum HOM05D001100 ORTHO05D001503 2.3e-22 109.4 81 72.8
Psat7g088480 Pisum sativum HOM05D001100 ORTHO05D001503 2.3e-22 109.4 81 75.3
Cfa002905 Carpinus fangiana HOM05D001100 ORTHO05D001503 3.1e-22 109.0 81 74.1
MD01G1008900 Malus domestica HOM05D001100 ORTHO05D001503 3.1e-22 109.0 82 73.2
Phvul.002G190600 Phaseolus vulgaris HOM05D001100 ORTHO05D001503 3.1e-22 109.0 81 71.6
Potri.005G063900 Populus trichocarpa HOM05D001100 ORTHO05D001503 3.1e-22 109.0 81 75.3
Sc07g0001800 Simmondsia chinensis HOM05D001100 ORTHO05D001503 5.2e-22 108.2 81 71.6
VMungo0251G2364 Vigna mungo HOM05D001100 ORTHO05D001503 5.2e-22 108.2 80 72.5
Lj4g0016822 Lotus japonicus HOM05D001100 ORTHO05D001503 6.8e-22 107.8 81 72.8
Potri.007G105100 Populus trichocarpa HOM05D001100 ORTHO05D001503 6.8e-22 107.8 81 75.3
Cc07_g18630 Coffea canephora HOM05D001100 ORTHO05D001503 8.9e-22 107.5 79 74.7
vmacro18671 Vaccinium macrocarpon HOM05D001100 ORTHO05D001503 8.9e-22 107.5 79 73.4
Aqoxy1G01118 Aquilegia oxysepala HOM05D001100 ORTHO05D001503 1.2e-21 107.1 81 71.6
CSS0011776 Camellia sinensis var. sinensis HOM05D001100 ORTHO05D001503 1.2e-21 107.1 81 71.6
CSS0018704 Camellia sinensis var. sinensis HOM05D001100 ORTHO05D001503 1.2e-21 107.1 81 71.6
Hund04427 Selenicereus undatus HOM05D001100 ORTHO05D001503 1.2e-21 107.1 80 71.2
BolC3t18496H Brassica oleracea HOM05D001100 ORTHO05D001503 1.5e-21 106.7 82 72.0
Eucgr.I00195 Eucalyptus grandis HOM05D001100 ORTHO05D001503 1.5e-21 106.7 81 70.4
BraA06t26012Z Brassica rapa HOM05D001100 ORTHO05D001503 2.0e-21 106.3 82 72.0
PSO170G6694 Papaver somniferum HOM05D001100 ORTHO05D001503 2.6e-21 105.9 79 70.9
PSO528G0154 Papaver somniferum HOM05D001100 ORTHO05D001503 2.6e-21 105.9 79 70.9
Actinidia01386 Actinidia chinensis HOM05D001100 ORTHO05D001503 3.4e-21 105.5 81 71.6
Sed0005361 Sechium edule HOM05D001100 ORTHO05D001503 3.4e-21 105.5 81 67.9
ClCG01G015360 Citrullus lanatus HOM05D001100 ORTHO05D001503 4.4e-21 105.1 79 70.9
MELO3C008062.2 Cucumis melo HOM05D001100 ORTHO05D001503 5.8e-21 104.8 81 69.1
FAN19G1763 Fragaria x ananassa HOM05D001100 ORTHO05D001503 9.8e-21 104.0 83 68.7
SalBow1G4172 Salvia bowleyana HOM05D001100 ORTHO05D001503 1.3e-20 103.6 81 69.1
Migut.H00694 Erythranthe guttata HOM05D001100 ORTHO05D001503 1.7e-20 103.2 81 71.6
Lsat_1_v5_gn_4_137741 Lactuca sativa HOM05D001100 ORTHO05D001503 1.7e-20 103.2 81 69.1
CsaV3_6G041580 Cucumis sativus L. HOM05D001100 ORTHO05D001503 2.9e-20 102.4 81 67.9
Glyma.05G132200 Glycine max HOM05D001100 ORTHO05D001503 2.9e-20 102.4 76 73.7
RcHm_v2.0_Chr2g0121731 Rosa chinensis HOM05D001100 ORTHO05D001503 2.9e-20 102.4 79 72.2
Gohir.A09G019900 Gossypium hirsutum HOM05D001100 ORTHO05D001503 3.7e-20 102.1 81 70.4
CANSAT01G0170 Cannabis sativa HOM05D001100 ORTHO05D001503 4.9e-20 101.7 83 66.3
FvH4_1g24470 Fragaria vesca HOM05D001100 ORTHO05D001503 6.4e-20 101.3 82 69.5
Gorai.006G005300 Gossypium raimondii HOM05D001100 ORTHO05D001503 6.4e-20 101.3 93 66.7
Thecc.01G134000 Theobroma cacao HOM05D001100 ORTHO05D001503 6.4e-20 101.3 82 67.1
Gohir.A09G004400 Gossypium hirsutum HOM05D001100 ORTHO05D001503 8.3e-20 100.9 81 70.4
Gohir.D09G003900 Gossypium hirsutum HOM05D001100 ORTHO05D001503 8.3e-20 100.9 93 65.6
Nitab4.5_0000496g0090 Nicotiana tabacum HOM05D001100 ORTHO05D001503 8.3e-20 100.9 82 67.1
COL.COLO4_35760 Corchorus olitorius HOM05D001100 ORTHO05D001503 1.1e-19 100.5 81 69.1
Duzib187G0114 Durio zibethinus HOM05D001100 ORTHO05D001503 1.1e-19 100.5 93 64.5
Prupe.4G272000 Prunus persica HOM05D001100 ORTHO05D001503 1.1e-19 100.5 82 68.3
SGA_v2.0_scaffold370G50110 Striga asiatica HOM05D001100 ORTHO05D001503 1.1e-19 100.5 83 65.1
Haze_25258 Corylus avellana HOM05D001100 ORTHO05D001503 1.4e-19 100.1 92 62.0
FAN28G0182 Fragaria x ananassa HOM05D001100 ORTHO05D001503 1.4e-19 100.1 82 69.5
Nn5g28512 Nelumbo nucifera HOM05D001100 ORTHO05D001503 1.4e-19 100.1 81 66.7
CiPaw.03G120600 Carya illinoinensis HOM05D001100 ORTHO05D001503 1.9e-19 99.8 81 67.9
Nitab4.5_0006981g0010 Nicotiana tabacum HOM05D001100 ORTHO05D001503 1.9e-19 99.8 79 68.4
Sabra05G0053200 Salix brachista HOM05D001100 ORTHO05D001503 1.9e-19 99.8 78 70.5
HanXRQChr09g0259741 Helianthus annuus HOM05D001100 ORTHO05D001503 2.4e-19 99.4 81 66.7
Gohir.D09G019500 Gossypium hirsutum HOM05D001100 ORTHO05D001503 4.1e-19 98.6 81 69.1
Gorai.006G022900 Gossypium raimondii HOM05D001100 ORTHO05D001503 4.1e-19 98.6 81 69.1
Peaxi162Scf00525g00018 Petunia axillaris HOM05D001100 ORTHO05D001503 4.1e-19 98.6 81 66.7
Solyc05g056490.4 Solanum lycopersicum HOM05D001100 ORTHO05D001503 4.1e-19 98.6 81 67.9
Sopen05g034890 Solanum pennellii HOM05D001100 ORTHO05D001503 4.1e-19 98.6 81 67.9
PGSC0003DMG400023321 Solanum tuberosum HOM05D001100 ORTHO05D001503 5.4e-19 98.2 81 67.9
ATR0584G033 Amborella trichopoda HOM05D001100 ORTHO05D001503 7.0e-19 97.8 81 66.7
MSTRG.2644 Avicennia marina HOM05D001100 ORTHO05D001503 7.0e-19 97.8 81 64.2
Duzib264G0434 Durio zibethinus HOM05D001100 ORTHO05D001503 9.2e-19 97.4 81 67.9
Lalb_Chr07g0188391 Lupinus albus HOM05D001100 ORTHO05D001503 9.2e-19 97.4 77 68.8
SHI11462 Sapria himalayana HOM05D001100 ORTHO05D001503 9.2e-19 97.4 82 63.4
HPP92_005670 Vanilla planifolia HOM05D001100 ORTHO05D001503 9.2e-19 97.4 79 65.8
Ca_18248_v3 Cicer arietinum L. HOM05D001100 ORTHO05D001503 1.6e-18 96.7 77 70.1
PGR119G0884 Punica granatum HOM05D001100 ORTHO05D001503 1.6e-18 96.7 81 66.7
THA.LOC104818427 Tarenaya hassleriana HOM05D001100 ORTHO05D001503 1.6e-18 96.7 82 62.2
DCAR_001208 Daucus carota HOM05D001100 ORTHO05D001503 2.1e-18 96.3 81 65.4
CDE04G3754 Ceratophyllum demersum HOM05D001100 ORTHO05D001503 2.7e-18 95.9 81 64.2
FAN23G1742 Fragaria x ananassa HOM05D001100 ORTHO05D001503 2.7e-18 95.9 78 69.2
MBI06_g27446_MAGBIO Magnolia biondii HOM05D001100 ORTHO05D001503 2.7e-18 95.9 77 70.1
Oeu004238.1 Olea europaea HOM05D001100 ORTHO05D001503 3.5e-18 95.5 78 66.7
CARHR277920 Cardamine hirsuta HOM05D001100 ORTHO05D001503 4.6e-18 95.1 83 65.1
CAN.G1156.49 Capsicum annuum HOM05D001100 ORTHO05D001503 7.8e-18 94.4 81 65.4
Thhalv10013884m.g Eutrema salsugineum HOM05D001100 ORTHO05D001503 1.0e-17 94.0 82 62.2
Carub.0008s2478 Capsella rubella HOM05D001100 ORTHO05D001503 1.7e-17 93.2 81 65.4
AT5G09290 Arabidopsis thaliana HOM05D001100 ORTHO05D001503 2.3e-17 92.8 82 61.0
A06p30610 Brassica napus HOM05D001100 ORTHO05D001503 3.9e-17 92.0 82 62.2
A02p43100 Brassica napus HOM05D001100 ORTHO05D001503 5.0e-17 91.7 82 63.4
unitig_899.g14679 Utricularia gibba HOM05D001100 ORTHO05D001503 6.6e-17 91.3 83 61.4
AT5G64000 Arabidopsis thaliana HOM05D001100 ORTHO05D001503 1.1e-16 90.5 82 62.2
C03p62350 Brassica napus HOM05D001100 ORTHO05D001503 1.1e-16 90.5 82 61.0
CARHR277910 Cardamine hirsuta HOM05D001100 ORTHO05D001503 1.1e-16 90.5 82 61.0
Thhalv10004505m.g Eutrema salsugineum HOM05D001100 ORTHO05D001503 1.1e-16 90.5 82 63.4
Carub.0006s0784 Capsella rubella HOM05D001100 ORTHO05D001503 1.5e-16 90.1 82 59.8
Sp2g27060 Schrenkiella parvula HOM05D001100 ORTHO05D001503 1.5e-16 90.1 82 61.0
Sp2g27070 Schrenkiella parvula HOM05D001100 ORTHO05D001503 1.5e-16 90.1 82 63.4
Zm00001eb409060 Zea mays HOM05D001100 ORTHO05D001503 1.5e-16 90.1 81 54.3
AL6G19680 Arabidopsis lyrata HOM05D001100 ORTHO05D001503 1.9e-16 89.7 82 58.5
BcaC03g18236 Brassica carinata HOM05D001100 ORTHO05D001503 1.9e-16 89.7 82 59.8
Carub.0008s2477 Capsella rubella HOM05D001100 ORTHO05D001503 1.9e-16 89.7 82 61.0
Thhalv10004421m.g Eutrema salsugineum HOM05D001100 ORTHO05D001503 1.9e-16 89.7 82 62.2
AL8G41250 Arabidopsis lyrata HOM05D001100 ORTHO05D001503 3.3e-16 89.0 82 61.0
CARHR204120 Cardamine hirsuta HOM05D001100 ORTHO05D001503 3.3e-16 89.0 82 58.5
AT5G63990 Arabidopsis thaliana HOM05D001100 ORTHO05D001503 4.3e-16 88.6 82 59.8
A06p30620 Brassica napus HOM05D001100 ORTHO05D001503 4.3e-16 88.6 82 59.8
SEGI_26343 Sequoiadendron giganteum HOM05D001100 ORTHO05D001503 4.3e-16 88.6 81 58.0
Gohir.D10G108800 Gossypium hirsutum HOM05D001100 ORTHO05D001503 7.3e-16 87.8 83 63.9
Gohir.A10G156800 Gossypium hirsutum HOM05D001100 ORTHO05D001503 9.5e-16 87.4 83 63.9
Gorai.011G119100 Gossypium raimondii HOM05D001100 ORTHO05D001503 9.5e-16 87.4 83 63.9
QL10p043423 Quercus lobata HOM05D001100 ORTHO05D001503 9.5e-16 87.4 112 50.9
C03p62340 Brassica napus HOM05D001100 ORTHO05D001503 4.7e-15 85.1 82 57.3
C02p63070 Brassica napus HOM05D001100 ORTHO05D001503 6.2e-15 84.7 82 58.5
BolC2t12380H Brassica oleracea HOM05D001100 ORTHO05D001503 6.2e-15 84.7 82 58.5
Os12g0183200 Oryza sativa ssp. japonica HOM05D001100 ORTHO05D001503 6.2e-15 84.7 81 55.6
THA.LOC104819342 Tarenaya hassleriana HOM05D001100 ORTHO05D001503 6.2e-15 84.7 81 55.6
BcaC01g02653 Brassica carinata HOM05D001100 ORTHO05D001503 8.1e-15 84.3 82 57.3
BcaB07g29712 Brassica carinata HOM05D001100 ORTHO05D001503 1.1e-14 84.0 82 58.5
Zm00001eb409080 Zea mays HOM05D001100 ORTHO05D001503 8.9e-14 80.9 78 56.4
SMO134G0102 Selaginella moellendorffii HOM05D001100 ORTHO05D001503 3.4e-13 79.0 94 48.9
Mapoly0030s0063 Marchantia polymorpha HOM05D001100 ORTHO05D001503 2.2e-12 76.3 81 50.6
Rhsim08G0002400 Rhododendron simsii HOM05D001100 ORTHO05D001503 6.4e-12 74.7 147 38.8
Pp3c15_5590 Physcomitrium patens HOM05D001100 ORTHO05D001503 1.1e-11 73.9 81 51.9
AagrBONN_evm.TU.Sc2ySwM_117.3377 Anthoceros agrestis HOM05D001100 ORTHO05D001503 1.9e-11 73.2 84 51.2
PGSC0003DMG400030007 Solanum tuberosum HOM05D001100 ORTHO05D001503 7.1e-11 71.2 46 78.3
CBR_g10965 Chara braunii HOM05D001100 ORTHO05D001503 2.1e-10 69.7 83 51.8
AagrBONN_evm.TU.Sc2ySwM_344.4236 Anthoceros agrestis HOM05D001100 ORTHO05D001503 2.5e-08 62.8 82 48.8
Gohir.A04G103533 Gossypium hirsutum HOM05D001100 ORTHO05D001503 4.7e-07 58.5 36 83.3
Cre01.g030250 Chlamydomonas reinhardtii HOM05D001100 ORTHO05D001503 2.4e-06 56.2 79 44.3
Medtr2g012510 Medicago truncatula HOM05D001100 ORTHO05D001503 2.4e-06 56.2 82 43.9
TWI38G0457 Tripterygium wilfordii HOM05D001100 ORTHO05D001503 4.0e-06 55.5 82 45.1
Ca_00275_v3 Cicer arietinum L. HOM05D001100 ORTHO05D001503 8.9e-06 54.3 82 42.7
Ciclev10015112m.g Citrus clementina HOM05D001100 ORTHO05D001503 8.9e-06 54.3 83 43.4


User provided reference genes

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