Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p21540 Brassica napus HOM05D004188 ORTHO05D004445 7.2e-79 297.4 171 100.0
BraA06t25239Z Brassica rapa HOM05D004188 ORTHO05D004445 4.9e-67 258.1 171 91.2
BcaC01g01980 Brassica carinata HOM05D004188 ORTHO05D004445 4.6e-65 251.5 175 88.6
C03p69850 Brassica napus HOM05D004188 ORTHO05D004445 4.6e-65 251.5 175 88.6
BolC3t19246H Brassica oleracea HOM05D004188 ORTHO05D004445 4.6e-65 251.5 175 88.6
BcaB01g01101 Brassica carinata HOM05D004188 ORTHO05D004445 3.6e-62 241.9 179 82.7
Thhalv10002916m.g Eutrema salsugineum HOM05D004188 ORTHO05D004445 7.1e-42 174.5 182 67.0
AL5G23790 Arabidopsis lyrata HOM05D004188 ORTHO05D004445 2.3e-40 169.5 187 64.7
AT3G45230 Arabidopsis thaliana HOM05D004188 ORTHO05D004445 2.2e-35 152.9 185 62.7
Aa31LG4G14540 Aethionema arabicum HOM05D004188 ORTHO05D004445 1.4e-34 150.2 185 60.0
Carub.0005s1101 Capsella rubella HOM05D004188 ORTHO05D004445 4.2e-34 148.7 189 58.2
CARHR150740 Cardamine hirsuta HOM05D004188 ORTHO05D004445 4.6e-25 118.6 110 70.0
THA.LOC104810856 Tarenaya hassleriana HOM05D004188 ORTHO05D004445 5.1e-24 115.2 185 50.8
Gohir.D03G134100 Gossypium hirsutum HOM05D004188 ORTHO05D004445 6.9e-21 104.8 159 52.2
Gorai.003G141200 Gossypium raimondii HOM05D004188 ORTHO05D004445 9.0e-21 104.4 159 52.2
Duzib168G0960 Durio zibethinus HOM05D004188 ORTHO05D004445 6.5e-19 98.2 167 49.7
Gohir.A03G034200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 6.5e-19 98.2 167 47.9
Gohir.D05G102200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 1.2e-17 94.0 143 49.7
THA.LOC104799503 Tarenaya hassleriana HOM05D004188 ORTHO05D004445 1.6e-17 93.6 181 45.3
BcaC05g28877 Brassica carinata HOM05D026499 ORTHO05D027731 3.9e-16 89.0 123 59.3
C05p50000 Brassica napus HOM05D026499 ORTHO05D027731 3.9e-16 89.0 123 59.3
Prupe.6G101100 Prunus persica HOM05D004188 ORTHO05D004445 1.3e-14 84.0 65 66.2
PGSC0003DMG400008124 Solanum tuberosum HOM05D004188 ORTHO05D004445 1.6e-14 83.6 71 60.6
RcHm_v2.0_Chr5g0059401 Rosa chinensis HOM05D004188 ORTHO05D004445 3.7e-14 82.4 72 62.5
Duzib150G1311 Durio zibethinus HOM05D004188 ORTHO05D004445 1.8e-13 80.1 160 45.6
Duzib170G0015 Durio zibethinus HOM05D004188 ORTHO05D004445 3.1e-13 79.3 166 41.0
Lsat_1_v5_gn_1_65340 Lactuca sativa HOM05D004188 ORTHO05D004445 3.1e-13 79.3 139 48.2
BcaB08g36360 Brassica carinata HOM05D004188 ORTHO05D004445 4.1e-13 79.0 71 57.7
BraA10t43861Z Brassica rapa HOM05D004188 ORTHO05D004445 6.9e-13 78.2 71 56.3
CANSAT54G2412 Cannabis sativa HOM05D004188 ORTHO05D004445 6.9e-13 78.2 165 44.2
Thhalv10015987m.g Eutrema salsugineum HOM05D004188 ORTHO05D004445 6.9e-13 78.2 173 40.5
Nitab4.5_0011114g0020 Nicotiana tabacum HOM05D004188 ORTHO05D004445 6.9e-13 78.2 63 65.1
BcaB01g04664 Brassica carinata HOM05D004188 ORTHO05D004445 9.0e-13 77.8 172 41.3
A10p17820 Brassica napus HOM05D004188 ORTHO05D004445 1.2e-12 77.4 71 56.3
Gorai.009G106500 Gossypium raimondii HOM05D004188 ORTHO05D004445 2.0e-12 76.6 142 46.5
CsaV3_6G013900 Cucumis sativus L. HOM05D004188 ORTHO05D004445 2.6e-12 76.3 68 61.8
ClCG02G021140 Citrullus lanatus HOM05D004188 ORTHO05D004445 5.8e-12 75.1 53 69.8
VMungo1127G1131 Vigna mungo HOM05D000847 ORTHO05D003278 5.8e-12 75.1 160 46.2
FAN25G0660 Fragaria x ananassa HOM05D004188 ORTHO05D004445 1.0e-11 74.3 132 45.5
MBI10_g41700_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 1.0e-11 74.3 48 79.2
MELO3C025771.2 Cucumis melo HOM05D004188 ORTHO05D004445 1.3e-11 73.9 75 57.3
FAN11G3469 Fragaria x ananassa HOM05D004188 ORTHO05D004445 1.3e-11 73.9 63 63.5
MELO3C026856.2 Cucumis melo HOM05D004188 ORTHO05D004445 2.2e-11 73.2 67 55.2
Oeu001268.1 Olea europaea HOM05D004188 ORTHO05D004445 2.2e-11 73.2 74 56.8
MSTRG.21125 Avicennia marina HOM05D004188 ORTHO05D004445 2.9e-11 72.8 69 60.9
Rhsim01G0217000 Rhododendron simsii HOM05D004188 ORTHO05D004445 2.9e-11 72.8 46 71.7
Sed0015663 Sechium edule HOM05D004188 ORTHO05D004445 2.9e-11 72.8 56 64.3
DCAR_006061 Daucus carota HOM05D004188 ORTHO05D004445 5.0e-11 72.0 63 61.9
PGR102G1665 Punica granatum HOM05D004188 ORTHO05D004445 5.0e-11 72.0 76 63.2
Sed0026517 Sechium edule HOM05D004188 ORTHO05D004445 6.5e-11 71.6 64 56.2
ClCG03G002160 Citrullus lanatus HOM05D004188 ORTHO05D004445 8.4e-11 71.2 67 55.2
FAN16G2082 Fragaria x ananassa HOM05D004188 ORTHO05D004445 8.4e-11 71.2 122 50.0
Gohir.A05G102500 Gossypium hirsutum HOM05D004188 ORTHO05D004445 8.4e-11 71.2 143 42.7
Potri.004G210300 Populus trichocarpa HOM05D004188 ORTHO05D004445 8.4e-11 71.2 167 37.7
MBI07_g19312_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 1.1e-10 70.9 161 41.0
Psat7g224760 Pisum sativum HOM05D004188 ORTHO05D004445 1.1e-10 70.9 65 56.9
CAN.G920.1 Capsicum annuum HOM05D004188 ORTHO05D004445 1.4e-10 70.5 147 43.5
arahy.Tifrunner.gnm1.ann1.70MDEI Arachis hypogaea HOM05D004188 ORTHO05D004445 2.5e-10 69.7 54 66.7
arahy.Tifrunner.gnm1.ann1.P4NYDW Arachis hypogaea HOM05D004188 ORTHO05D004445 2.5e-10 69.7 54 66.7
Medtr4g059520 Medicago truncatula HOM05D004188 ORTHO05D004445 2.5e-10 69.7 67 58.2
Medtr4g459420 Medicago truncatula HOM05D004188 ORTHO05D004445 2.5e-10 69.7 67 58.2
Nitab4.5_0000650g0240 Nicotiana tabacum HOM05D004188 ORTHO05D004445 2.5e-10 69.7 154 40.9
Oeu030181.1 Olea europaea HOM05D004188 ORTHO05D004445 2.5e-10 69.7 72 58.3
EL10Ac9g22513 Beta vulgaris HOM05D004188 ORTHO05D004445 3.2e-10 69.3 135 41.5
Manes.04G021600 Manihot esculenta HOM05D004188 ORTHO05D004445 3.2e-10 69.3 170 35.9
PGSC0003DMG400029164 Solanum tuberosum HOM05D004188 ORTHO05D004445 3.2e-10 69.3 143 44.8
FAN21G0748 Fragaria x ananassa HOM05D004188 ORTHO05D004445 4.2e-10 68.9 46 71.7
Potri.009G013500 Populus trichocarpa HOM05D004188 ORTHO05D004445 4.2e-10 68.9 81 50.6
Solyc06g016790.3 Solanum lycopersicum HOM05D004188 ORTHO05D004445 4.2e-10 68.9 161 40.4
Sopen11g028110 Solanum pennellii HOM05D004188 ORTHO05D004445 4.2e-10 68.9 144 45.1
Manes.11G144800 Manihot esculenta HOM05D004188 ORTHO05D004445 5.5e-10 68.6 72 52.8
Sabra04G0141900 Salix brachista HOM05D004188 ORTHO05D004445 5.5e-10 68.6 45 71.1
Migut.D02222 Erythranthe guttata HOM05D004188 ORTHO05D004445 7.1e-10 68.2 55 63.6
Migut.D02278 Erythranthe guttata HOM05D004188 ORTHO05D004445 7.1e-10 68.2 55 63.6
FvH4_3g32420 Fragaria vesca HOM05D004188 ORTHO05D004445 7.1e-10 68.2 46 71.7
Glyma.12G067800 Glycine max HOM05D004188 ORTHO05D004445 7.1e-10 68.2 63 58.7
arahy.Tifrunner.gnm1.ann1.D47N05 Arachis hypogaea HOM05D004188 ORTHO05D004445 9.3e-10 67.8 67 53.7
ECA248G2476 Erigeron canadensis HOM05D004188 ORTHO05D004445 1.2e-09 67.4 115 47.0
Solyc11g069390.1 Solanum lycopersicum HOM05D004188 ORTHO05D004445 1.6e-09 67.0 149 42.3
TPR.G15542 Trifolium pratense HOM05D004188 ORTHO05D004445 3.5e-09 65.9 69 56.5
Phvul.011G078900 Phaseolus vulgaris HOM05D004188 ORTHO05D004445 4.6e-09 65.5 141 45.4
BolC3t13742H Brassica oleracea HOM05D004188 ORTHO05D004445 6.1e-09 65.1 172 40.1
CiPaw.14G080400 Carya illinoinensis HOM05D004188 ORTHO05D004445 6.1e-09 65.1 67 55.2
ECA233G4889 Erigeron canadensis HOM05D004188 ORTHO05D004445 6.1e-09 65.1 71 53.5
TPR.G11601 Trifolium pratense HOM05D004188 ORTHO05D004445 6.1e-09 65.1 76 51.3
arahy.Tifrunner.gnm1.ann1.86U5T6 Arachis hypogaea HOM05D004188 ORTHO05D004445 7.9e-09 64.7 65 52.3
TWI31G0432 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 7.9e-09 64.7 67 53.7
MELO3C012432.2 Cucumis melo HOM05D004188 ORTHO05D004445 1.0e-08 64.3 56 57.1
Lalb_Chr22g0350231 Lupinus albus HOM05D004188 ORTHO05D004445 1.0e-08 64.3 66 50.0
Ca_05256_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 1.3e-08 63.9 69 55.1
Hma1.2p1_1031F.1_g250070 Hydrangea macrophylla HOM05D004188 ORTHO05D004445 1.8e-08 63.5 67 50.7
Lsat_1_v5_gn_2_98481 Lactuca sativa HOM05D004188 ORTHO05D004445 1.8e-08 63.5 137 36.5
C03p12760 Brassica napus HOM05D004188 ORTHO05D004445 2.3e-08 63.2 172 39.0
Medtr2g094170 Medicago truncatula HOM05D004188 ORTHO05D004445 2.3e-08 63.2 71 52.1
Peaxi162Scf00270g00089 Petunia axillaris HOM05D004188 ORTHO05D004445 2.3e-08 63.2 62 58.1
Rhsim01G0217100 Rhododendron simsii HOM05D004188 ORTHO05D004445 2.3e-08 63.2 134 39.6
Sc06g0010170 Simmondsia chinensis HOM05D004188 ORTHO05D004445 2.3e-08 63.2 59 54.2
Glyma.11G146900 Glycine max HOM05D004188 ORTHO05D004445 3.0e-08 62.8 63 54.0
Glyma.12G172900 Glycine max HOM05D004188 ORTHO05D004445 3.0e-08 62.8 65 53.8
Lalb_Chr14g0374691 Lupinus albus HOM05D004188 ORTHO05D004445 3.0e-08 62.8 63 52.4
Psat5g278280 Pisum sativum HOM05D004188 ORTHO05D004445 3.0e-08 62.8 78 52.6
Dinv32748 Davidia involucrata HOM05D004188 ORTHO05D004445 3.9e-08 62.4 166 37.3
Cc01_g11150 Coffea canephora HOM05D004188 ORTHO05D004445 5.1e-08 62.0 167 35.3
Actinidia03061 Actinidia chinensis HOM05D004188 ORTHO05D004445 6.7e-08 61.6 48 64.6
CAN.G631.25 Capsicum annuum HOM05D004188 ORTHO05D004445 6.7e-08 61.6 148 40.5
Prupe.2G214100 Prunus persica HOM05D004188 ORTHO05D004445 6.7e-08 61.6 46 58.7
Ah.01g014350 Amaranthus hybridus HOM05D004188 ORTHO05D004445 1.1e-07 60.8 54 53.7
Carub.0008s2131 Capsella rubella HOM05D004188 ORTHO05D004445 1.1e-07 60.8 119 41.2
TWI75G1406 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 1.5e-07 60.5 164 40.9
unitig_699.g19195 Utricularia gibba HOM05D004188 ORTHO05D004445 1.5e-07 60.5 39 69.2
CsaV3_1G012810 Cucumis sativus L. HOM05D004188 ORTHO05D004445 1.9e-07 60.1 169 40.2
C09p53350 Brassica napus HOM05D004188 ORTHO05D004445 2.5e-07 59.7 59 54.2
Dinv31327 Davidia involucrata HOM05D001979 ORTHO05D001961 2.5e-07 59.7 45 60.0
arahy.Tifrunner.gnm1.ann1.H0Z3H2 Arachis hypogaea HOM05D004188 ORTHO05D004445 3.3e-07 59.3 49 55.1
A03p11070 Brassica napus HOM05D004188 ORTHO05D004445 3.3e-07 59.3 172 36.6
BraA03t10421Z Brassica rapa HOM05D004188 ORTHO05D004445 3.3e-07 59.3 172 36.6
TAR629G0463 Trochodendron aralioides HOM05D004188 ORTHO05D004445 3.3e-07 59.3 170 35.3
Nitab4.5_0012712g0020 Nicotiana tabacum HOM05D004188 ORTHO05D004445 4.3e-07 58.9 174 39.7
Lsat_1_v5_gn_6_46020 Lactuca sativa HOM05D004188 ORTHO05D004445 7.4e-07 58.2 164 37.8
Ca_01416_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 9.7e-07 57.8 112 45.5
Nn2g13093 Nelumbo nucifera HOM05D004188 ORTHO05D004445 9.7e-07 57.8 172 35.5
VMungo1080G0149 Vigna mungo HOM05D004188 ORTHO05D004445 9.7e-07 57.8 66 48.5
Lj3g0014225 Lotus japonicus HOM05D004188 ORTHO05D004445 1.3e-06 57.4 64 48.4
Mapoly0127s0007 Marchantia polymorpha HOM05D004188 ORTHO05D004445 1.3e-06 57.4 62 51.6
CiPaw.13G112700 Carya illinoinensis HOM05D004188 ORTHO05D004445 1.6e-06 57.0 151 39.7
Lj2g0024305 Lotus japonicus HOM05D004188 ORTHO05D004445 2.2e-06 56.6 51 52.9
Peaxi162Scf00092g00152 Petunia axillaris HOM05D004188 ORTHO05D004445 2.8e-06 56.2 170 37.6
Rhsim13G0094200 Rhododendron simsii HOM05D004188 ORTHO05D004445 2.8e-06 56.2 157 36.9
HPP92_005145 Vanilla planifolia HOM05D053319 ORTHO05D004445 2.8e-06 56.2 79 41.8
CANSAT56G2191 Cannabis sativa HOM05D004188 ORTHO05D004445 3.7e-06 55.8 49 59.2
AT5G60630 Arabidopsis thaliana HOM05D004188 ORTHO05D004445 4.8e-06 55.5 178 34.8
Sabra09G0008000 Salix brachista HOM05D004188 ORTHO05D004445 4.8e-06 55.5 153 37.3
DCAR_006440 Daucus carota HOM05D004188 ORTHO05D004445 6.3e-06 55.1 86 41.9
Sopen06g005740 Solanum pennellii HOM05D004188 ORTHO05D004445 6.3e-06 55.1 161 41.0


User provided reference genes

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