Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p21200 Brassica napus HOM05D007132 ORTHO05D009120 1.9e-211 738.8 351 100.0
BraA06t25207Z Brassica rapa HOM05D007132 ORTHO05D009120 3.5e-205 718.0 351 97.7
BolC3t19289H Brassica oleracea HOM05D007132 ORTHO05D009120 1.8e-201 705.7 351 96.0
C03p70370 Brassica napus HOM05D007132 ORTHO05D009120 3.8e-199 698.0 347 95.7
BcaB01g01051 Brassica carinata HOM05D007132 ORTHO05D009120 4.6e-189 664.5 351 90.6
Sp2g03890 Schrenkiella parvula HOM05D007132 ORTHO05D009120 1.3e-183 646.4 346 88.2
CARHR154210 Cardamine hirsuta HOM05D007132 ORTHO05D009120 1.1e-182 643.3 351 86.9
Thhalv10002595m.g Eutrema salsugineum HOM05D007132 ORTHO05D009120 3.6e-181 638.3 350 87.1
AL5G24560 Arabidopsis lyrata HOM05D007132 ORTHO05D009120 1.3e-175 619.8 349 84.8
BcaC01g01945 Brassica carinata HOM05D007132 ORTHO05D009120 1.2e-173 613.2 305 94.8
AT3G45880 Arabidopsis thaliana HOM05D007132 ORTHO05D009120 1.5e-171 606.3 350 82.3
Carub.0005s1173 Capsella rubella HOM05D007132 ORTHO05D009120 1.3e-170 603.2 351 82.1
Aa31LG9G15710 Aethionema arabicum HOM05D007132 ORTHO05D009120 2.9e-167 592.0 332 84.3
THA.LOC104798521 Tarenaya hassleriana HOM05D007132 ORTHO05D009120 6.3e-146 521.2 346 72.8
Duzib168G0014 Durio zibethinus HOM05D007132 ORTHO05D009120 1.2e-136 490.3 328 68.9
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 1.0e-135 487.3 351 67.8
CiPaw.11G075400 Carya illinoinensis HOM05D007132 ORTHO05D009120 1.9e-134 483.0 329 68.7
Thecc.09G252800 Theobroma cacao HOM05D007132 ORTHO05D009120 2.5e-134 482.6 326 69.3
Sabra09G0016800 Salix brachista HOM05D007132 ORTHO05D009120 9.5e-134 480.7 331 68.9
Manes.S095221 Manihot esculenta HOM05D007132 ORTHO05D009120 1.6e-133 479.9 335 68.4
TWI75G0244 Tripterygium wilfordii HOM05D007132 ORTHO05D009120 4.7e-133 478.4 353 65.7
Gohir.A09G109100 Gossypium hirsutum HOM05D007132 ORTHO05D009120 1.0e-132 477.2 343 66.2
Cfa012869 Carpinus fangiana HOM05D007132 ORTHO05D009120 1.8e-132 476.5 352 65.6
COL.COLO4_33243 Corchorus olitorius HOM05D007132 ORTHO05D009120 2.3e-132 476.1 343 66.2
Ciclev10031829m.g Citrus clementina HOM05D007132 ORTHO05D009120 3.1e-132 475.7 350 66.6
Atru.chr8.2638 Acer truncatum HOM05D007132 ORTHO05D009120 4.0e-132 475.3 342 66.4
Potri.009G025400 Populus trichocarpa HOM05D007132 ORTHO05D009120 4.0e-132 475.3 329 67.8
Gohir.D09G105701 Gossypium hirsutum HOM05D007132 ORTHO05D009120 6.8e-132 474.6 328 68.0
Gorai.006G123100 Gossypium raimondii HOM05D007132 ORTHO05D009120 8.9e-132 474.2 343 65.9
TPR.G5247 Trifolium pratense HOM05D007132 ORTHO05D009120 1.3e-130 470.3 348 62.6
Lj2g0003748 Lotus japonicus HOM05D007132 ORTHO05D009120 2.2e-130 469.5 348 64.4
CANSAT11G0857 Cannabis sativa HOM05D007132 ORTHO05D009120 4.9e-130 468.4 330 66.1
Glyma.11G089600 Glycine max HOM05D007132 ORTHO05D009120 6.4e-130 468.0 348 63.8
MD05G1209900 Malus domestica HOM05D007132 ORTHO05D009120 6.4e-130 468.0 345 63.2
Potri.001G233200 Populus trichocarpa HOM05D007132 ORTHO05D009120 6.4e-130 468.0 325 68.0
VMungo1215G2638 Vigna mungo HOM05D007132 ORTHO05D009120 6.4e-130 468.0 335 65.1
arahy.Tifrunner.gnm1.ann1.63YFX7 Arachis hypogaea HOM05D007132 ORTHO05D009120 1.4e-129 466.8 352 63.1
arahy.Tifrunner.gnm1.ann1.WE0KUF Arachis hypogaea HOM05D007132 ORTHO05D009120 1.4e-129 466.8 352 63.1
vmacro00083 Vaccinium macrocarpon HOM05D007132 ORTHO05D009120 1.4e-129 466.8 329 66.3
EL10Ac2g04081 Beta vulgaris HOM05D007132 ORTHO05D009120 1.9e-129 466.5 325 66.8
AUR62009339 Chenopodium quinoa HOM05D007132 ORTHO05D009120 1.9e-129 466.5 324 66.4
Medtr5g025190 Medicago truncatula HOM05D007132 ORTHO05D009120 3.2e-129 465.7 348 62.6
Eucgr.E01138 Eucalyptus grandis HOM05D007132 ORTHO05D009120 9.2e-129 464.2 332 64.2
Aqoxy3G02733 Aquilegia oxysepala HOM05D007132 ORTHO05D009120 6.0e-128 461.5 353 60.9
Nitab4.5_0004157g0010 Nicotiana tabacum HOM05D007132 ORTHO05D009120 1.3e-127 460.3 328 65.9
Psat2g145880 Pisum sativum HOM05D007132 ORTHO05D009120 3.0e-127 459.1 352 61.9
DCAR_028364 Daucus carota HOM05D007132 ORTHO05D009120 1.5e-126 456.8 329 64.4
Nn1g09371 Nelumbo nucifera HOM05D007132 ORTHO05D009120 1.5e-126 456.8 360 62.2
PGSC0003DMG400001970 Solanum tuberosum HOM05D007132 ORTHO05D009120 1.5e-126 456.8 324 64.8
PGR042G0795 Punica granatum HOM05D007132 ORTHO05D009120 2.5e-126 456.1 328 65.2
Cc08_g05480 Coffea canephora HOM05D007132 ORTHO05D009120 4.3e-126 455.3 335 64.8
RcHm_v2.0_Chr5g0027441 Rosa chinensis HOM05D007132 ORTHO05D009120 5.6e-126 454.9 351 62.7
Actinidia32785 Actinidia chinensis HOM05D007132 ORTHO05D009120 7.3e-126 454.5 332 65.7
Lj8A344T21 Lonicera japonica HOM05D007132 ORTHO05D009120 3.6e-125 452.2 387 57.4
MBI04_g06282_MAGBIO Magnolia biondii HOM05D007132 ORTHO05D009120 1.1e-124 450.7 352 62.8
Sopen08g024160 Solanum pennellii HOM05D007132 ORTHO05D009120 1.4e-124 450.3 324 64.2
Oeu046789.1 Olea europaea HOM05D007132 ORTHO05D009120 3.1e-124 449.1 326 64.1
CSS0020867 Camellia sinensis var. sinensis HOM05D007132 ORTHO05D009120 6.8e-124 448.0 332 64.5
FvH4_3g16420 Fragaria vesca HOM05D007132 ORTHO05D009120 6.8e-124 448.0 350 61.4
CDE02G3577 Ceratophyllum demersum HOM05D007132 ORTHO05D009120 8.9e-124 447.6 345 60.0
Lj8C1T2 Lonicera japonica HOM05D007132 ORTHO05D009120 8.9e-124 447.6 413 54.5
SalBow8G0736 Salvia bowleyana HOM05D007132 ORTHO05D009120 3.4e-123 445.7 339 60.5
Solyc08g075510.4 Solanum lycopersicum HOM05D007132 ORTHO05D009120 5.8e-123 444.9 320 64.1
CAN.G1026.1 Capsicum annuum HOM05D007132 ORTHO05D009120 1.7e-122 443.4 320 63.4
HanXRQChr12g0382251 Helianthus annuus HOM05D007132 ORTHO05D009120 3.7e-122 442.2 351 61.0
ATR0568G089 Amborella trichopoda HOM05D007132 ORTHO05D009120 1.4e-121 440.3 336 61.9
MSTRG.1761 Avicennia marina HOM05D007132 ORTHO05D009120 2.4e-121 439.5 346 59.5
Lsat_1_v5_gn_6_15181 Lactuca sativa HOM05D007132 ORTHO05D009120 2.4e-121 439.5 334 62.0
PSO541G5430 Papaver somniferum HOM05D007132 ORTHO05D009120 2.4e-121 439.5 333 62.8
Nitab4.5_0000030g0380 Nicotiana tabacum HOM05D007132 ORTHO05D009120 3.2e-121 439.1 328 63.4
FAN11G4000 Fragaria x ananassa HOM05D007132 ORTHO05D009120 3.5e-120 435.6 354 60.5
FAN25G2365 Fragaria x ananassa HOM05D007132 ORTHO05D009120 1.3e-119 433.7 354 59.9
QL12p004376 Quercus lobata HOM05D007132 ORTHO05D009120 1.3e-119 433.7 399 55.6
Peaxi162Scf00053g00715 Petunia axillaris HOM05D007132 ORTHO05D009120 1.2e-117 427.2 347 60.2
SGA_v2.0_scaffold111G31350 Striga asiatica HOM05D007132 ORTHO05D009120 6.2e-117 424.9 364 56.0
Sc01g0005800 Simmondsia chinensis HOM05D007132 ORTHO05D009120 1.5e-115 420.2 311 63.0
AUR62023023 Chenopodium quinoa HOM05D007132 ORTHO05D009120 5.8e-115 418.3 325 61.8
AUR62043353 Chenopodium quinoa HOM05D007132 ORTHO05D009120 5.8e-115 418.3 325 61.8
SEGI_38459 Sequoiadendron giganteum HOM05D007132 ORTHO05D009120 1.7e-111 406.8 331 57.4
Os09g0483600 Oryza sativa ssp. japonica HOM05D007132 ORTHO05D009120 2.8e-109 399.4 360 55.0
Prupe.4G147600 Prunus persica HOM05D007132 ORTHO05D009120 1.4e-108 397.1 282 63.8
Haze_08441 Corylus avellana HOM05D007132 ORTHO05D009120 8.9e-108 394.4 284 65.8
Pp3c2_13200 Physcomitrium patens HOM05D007132 ORTHO05D009120 3.4e-107 392.5 353 53.8
Phvul.002G120400 Phaseolus vulgaris HOM05D007132 ORTHO05D009120 3.8e-106 389.0 281 64.1
unitig_46.g18229 Utricularia gibba HOM05D007132 ORTHO05D009120 7.1e-105 384.8 333 57.4
Lalb_Chr05g0215041 Lupinus albus HOM05D007132 ORTHO05D009120 6.0e-104 381.7 285 63.5
Hund11034 Selenicereus undatus HOM05D007132 ORTHO05D009120 1.1e-102 377.5 282 62.4
SMO367G0267 Selaginella moellendorffii HOM05D007132 ORTHO05D009120 1.5e-102 377.1 343 54.8
Zm00001eb316510 Zea mays HOM05D007132 ORTHO05D009120 4.3e-102 375.6 347 55.6
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 6.2e-101 371.7 317 57.7
Ah.10g035250 Amaranthus hybridus HOM05D001758 ORTHO05D005969 4.0e-92 342.4 284 58.8
Nitab4.5_0000898g0130 Nicotiana tabacum HOM05D007132 ORTHO05D009120 1.2e-88 330.9 277 58.8
Sp5g15660 Schrenkiella parvula HOM05D007132 ORTHO05D009120 9.6e-86 321.2 276 64.1
PSO675G1526 Papaver somniferum HOM05D007132 ORTHO05D009120 1.8e-84 317.0 260 58.8
MD10G1196200 Malus domestica HOM05D007132 ORTHO05D009120 1.7e-61 240.7 156 68.6
AagrBONN_evm.TU.Sc2ySwM_344.2529 Anthoceros agrestis HOM05D007132 ORTHO05D009120 5.9e-59 232.3 282 46.1
Cc02_g31510 Coffea canephora HOM05D007132 ORTHO05D009120 1.2e-56 224.6 145 66.9
TAR629G3242 Trochodendron aralioides HOM05D007132 ORTHO05D009120 6.7e-55 218.8 189 58.7
MCO03G301 Micromonas commoda HOM05D007132 ORTHO05D009120 1.8e-52 210.7 335 38.5
GSVIVG01036861001 Vitis vinifera HOM05D007132 ORTHO05D009120 1.1e-46 191.4 137 62.8
TAR629G3340 Trochodendron aralioides HOM05D007132 ORTHO05D009120 5.7e-46 189.1 137 62.0
Cfa022513 Carpinus fangiana HOM05D007132 ORTHO05D009120 2.0e-43 180.6 304 36.2
Migut.E01364 Erythranthe guttata HOM05D007132 ORTHO05D009120 1.6e-35 154.5 107 64.5
PRCOL_00004459 Prasinoderma coloniale HOM05D007132 ORTHO05D009120 1.9e-33 147.5 331 33.2
Cre03.g175750 Chlamydomonas reinhardtii HOM05D007132 ORTHO05D009120 2.3e-31 140.6 488 24.0
Rhsim11G0036100 Rhododendron simsii HOM05D007132 ORTHO05D009120 5.4e-28 129.4 75 74.7
Lalb_Chr05g0215031 Lupinus albus HOM05D007132 ORTHO05D009120 8.0e-16 89.0 63 65.1
Nitab4.5_0000480g0030 Nicotiana tabacum HOM05D007132 ORTHO05D009120 1.0e-15 88.6 77 54.5
CDE11G0272 Ceratophyllum demersum HOM05D000435 ORTHO05D000430 1.2e-14 85.1 105 41.0
Haze_08440 Corylus avellana HOM05D000433 ORTHO05D000443 3.4e-14 83.6 45 80.0
Psat2g145800 Pisum sativum HOM05D007132 ORTHO05D009120 5.8e-14 82.8 68 61.8
THA.LOC104816908 Tarenaya hassleriana HOM05D004419 ORTHO05D005480 9.8e-14 82.0 278 28.1
Carub.0003s2077 Capsella rubella HOM05D004419 ORTHO05D005480 1.3e-13 81.6 280 25.4
Aa31LG8G7630 Aethionema arabicum HOM05D004419 ORTHO05D005480 1.6e-11 74.7 280 26.1
Medtr5g032230 Medicago truncatula HOM05D007132 ORTHO05D009120 1.6e-11 74.7 93 44.1
Pp3c17_10850 Physcomitrium patens HOM05D004419 ORTHO05D005480 1.6e-11 74.7 301 23.6
TPR.G13661 Trifolium pratense HOM05D004419 ORTHO05D005633 2.0e-11 74.3 314 25.8
HPP92_017970 Vanilla planifolia HOM05D004419 ORTHO05D005480 2.0e-11 74.3 292 23.6
Ciclev10015488m.g Citrus clementina HOM05D004419 ORTHO05D005480 2.7e-11 73.9 276 25.4
Medtr4g066020 Medicago truncatula HOM05D004419 ORTHO05D005480 2.7e-11 73.9 314 25.2
FAN13G1029 Fragaria x ananassa HOM05D007132 ORTHO05D009181 4.6e-11 73.2 192 31.8
MD03G1020700 Malus domestica HOM05D004419 ORTHO05D005480 4.6e-11 73.2 276 24.6
SHI30509 Sapria himalayana HOM05D004419 ORTHO05D005480 1.0e-10 72.0 292 24.0
AL3G34730 Arabidopsis lyrata HOM05D004419 ORTHO05D005480 1.3e-10 71.6 294 24.1
Ah.04g161770 Amaranthus hybridus HOM05D004419 ORTHO05D005480 1.7e-10 71.2 305 25.9
ATR0605G084 Amborella trichopoda HOM05D004419 ORTHO05D005480 1.7e-10 71.2 257 25.7
Lsat_1_v5_gn_6_50061 Lactuca sativa HOM05D004419 ORTHO05D005480 1.7e-10 71.2 275 23.6
Ca_20582_v3 Cicer arietinum L. HOM05D004419 ORTHO05D005480 2.3e-10 70.9 314 24.2
CANSAT54G1224 Cannabis sativa HOM05D004419 ORTHO05D005480 3.0e-10 70.5 278 25.5
MELO3C015807.2 Cucumis melo HOM05D004978 ORTHO05D005621 5.0e-10 69.7 318 23.3
CSS0021936 Camellia sinensis var. sinensis HOM05D004419 ORTHO05D005480 1.9e-09 67.8 275 24.0
Thecc.09G224700 Theobroma cacao HOM05D004419 ORTHO05D005480 1.9e-09 67.8 292 25.3
FAN02G3822 Fragaria x ananassa HOM05D007132 ORTHO05D009120 2.5e-09 67.4 93 43.0
Hma1.2p1_0143F.1_g064490 Hydrangea macrophylla HOM05D004419 ORTHO05D005480 2.5e-09 67.4 285 22.8
PSO384G0662 Papaver somniferum HOM05D004419 ORTHO05D005480 2.5e-09 67.4 276 23.9
Aqoxy2G00106 Aquilegia oxysepala HOM05D004419 ORTHO05D005480 4.3e-09 66.6 302 24.2
Mapoly0003s0071 Marchantia polymorpha HOM05D004978 ORTHO05D005621 4.3e-09 66.6 314 24.8
ECA233G0260 Erigeron canadensis HOM05D004419 ORTHO05D005480 5.6e-09 66.2 285 23.5
Lj3g0003248 Lotus japonicus HOM05D004419 ORTHO05D005480 5.6e-09 66.2 307 24.1
Hund22076 Selenicereus undatus HOM05D004419 ORTHO05D005480 5.6e-09 66.2 285 23.9
Sed0001509 Sechium edule HOM05D004419 ORTHO05D005480 7.3e-09 65.9 277 25.3
HanXRQChr02g0056491 Helianthus annuus HOM05D004419 ORTHO05D005480 9.5e-09 65.5 280 23.6
Nn7g36075 Nelumbo nucifera HOM05D004419 ORTHO05D005480 9.5e-09 65.5 302 23.5
CsaV3_1G042600 Cucumis sativus L. HOM05D004419 ORTHO05D005480 1.6e-08 64.7 276 24.6
Migut.D00356 Erythranthe guttata HOM05D004978 ORTHO05D005621 1.6e-08 64.7 324 24.4
AUR62032283 Chenopodium quinoa HOM05D004978 ORTHO05D005621 2.8e-08 63.9 148 31.1
Migut.D00562 Erythranthe guttata HOM05D004419 ORTHO05D005480 3.6e-08 63.5 280 23.2
MELO3C015209.2 Cucumis melo HOM05D004419 ORTHO05D005480 4.7e-08 63.2 276 24.3
EL10Ac4g10313 Beta vulgaris HOM05D004419 ORTHO05D005480 6.2e-08 62.8 300 25.7
CsaV3_7G027890 Cucumis sativus L. HOM05D004978 ORTHO05D005621 6.2e-08 62.8 142 29.6
vmacro12711 Vaccinium macrocarpon HOM05D004419 ORTHO05D005480 8.1e-08 62.4 323 23.8
Cfa024691 Carpinus fangiana HOM05D003208 ORTHO05D005480 1.4e-07 61.6 300 22.0
Glyma.12G055000 Glycine max HOM05D004419 ORTHO05D005480 1.4e-07 61.6 285 23.5
CBR_g68529 Chara braunii HOM05D004419 ORTHO05D005480 5.2e-07 59.7 301 21.9
Manes.06G168600 Manihot esculenta HOM05D004419 ORTHO05D005480 5.2e-07 59.7 185 27.0
Rhsim11G0036200 Rhododendron simsii HOM05D007132 ORTHO05D009120 5.2e-07 59.7 36 69.4
Pp3c5_1010 Physcomitrium patens HOM05D004419 ORTHO05D005480 1.2e-06 58.5 140 27.9
Psat7g213880 Pisum sativum HOM05D004419 ORTHO05D005480 2.0e-06 57.8 221 25.3
PGR119G1205 Punica granatum HOM05D004419 ORTHO05D005480 5.8e-06 56.2 305 23.0
AagrBONN_evm.TU.Sc2ySwM_117.2029 Anthoceros agrestis HOM05D004978 ORTHO05D005621 9.8e-06 55.5 322 21.7


User provided reference genes

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