Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p15920 Brassica napus HOM05D005591 ORTHO05D007131 1.5e-195 686.0 351 100.0
BraA06t24698Z Brassica rapa HOM05D005591 ORTHO05D007131 8.4e-191 670.2 354 98.0
BolC5t30530H Brassica oleracea HOM05D005591 ORTHO05D007131 4.3e-187 657.9 355 96.1
C05p18230 Brassica napus HOM05D005591 ORTHO05D007131 4.8e-186 654.4 355 95.8
Sp1g17610 Schrenkiella parvula HOM05D005591 ORTHO05D007131 5.1e-172 607.8 354 92.1
AT1G19800 Arabidopsis thaliana HOM05D005591 ORTHO05D007131 1.3e-170 603.2 354 91.0
AL1G32520 Arabidopsis lyrata HOM05D005591 ORTHO05D007131 6.3e-170 600.9 354 90.7
BcaC07g38997 Brassica carinata HOM05D005591 ORTHO05D007131 4.5e-168 594.7 354 91.0
C08p19710 Brassica napus HOM05D005591 ORTHO05D007131 4.5e-168 594.7 354 91.0
BolC8t49608H Brassica oleracea HOM05D005591 ORTHO05D007131 1.0e-167 593.6 354 90.7
Carub.0001s1933 Capsella rubella HOM05D005591 ORTHO05D007131 2.2e-167 592.4 356 89.3
BcaB03g12900 Brassica carinata HOM05D005591 ORTHO05D007131 1.9e-166 589.3 354 88.7
Thhalv10008071m.g Eutrema salsugineum HOM05D005591 ORTHO05D007131 1.6e-165 586.3 354 89.5
CARHR020310 Cardamine hirsuta HOM05D005591 ORTHO05D007131 4.7e-165 584.7 357 88.2
BcaB07g31994 Brassica carinata HOM05D005591 ORTHO05D007131 7.0e-161 570.9 355 85.6
Aa31LG7G4330 Aethionema arabicum HOM05D005591 ORTHO05D007131 5.3e-153 544.7 354 82.8
THA.LOC104827705 Tarenaya hassleriana HOM05D005591 ORTHO05D007131 1.8e-148 529.6 354 80.8
Peaxi162Scf00673g00002 Petunia axillaris HOM05D005591 ORTHO05D007131 6.8e-132 474.6 308 78.9
Ciclev10020911m.g Citrus clementina HOM05D005591 ORTHO05D007131 1.5e-131 473.4 303 80.9
Nitab4.5_0000368g0340 Nicotiana tabacum HOM05D005591 ORTHO05D007131 3.4e-131 472.2 305 80.0
Nitab4.5_0006072g0030 Nicotiana tabacum HOM05D005591 ORTHO05D007131 9.8e-131 470.7 305 80.0
Dinv27163 Davidia involucrata HOM05D005591 ORTHO05D007131 2.9e-130 469.2 322 76.7
CSS0046220 Camellia sinensis var. sinensis HOM05D005591 ORTHO05D007131 6.4e-130 468.0 320 75.6
QL05p063015 Quercus lobata HOM05D005591 ORTHO05D007131 8.3e-130 467.6 292 80.5
CiPaw.01G109900 Carya illinoinensis HOM05D005591 ORTHO05D007131 1.4e-129 466.8 293 81.9
PGR083G2576 Punica granatum HOM05D005591 ORTHO05D007131 1.9e-129 466.5 293 81.2
PGSC0003DMG402024734 Solanum tuberosum HOM05D005591 ORTHO05D007131 5.4e-129 464.9 308 77.3
TWI60G1035 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 5.4e-129 464.9 353 70.0
CAN.G1648.2 Capsicum annuum HOM05D005591 ORTHO05D007131 7.0e-129 464.5 305 79.0
TWI34G1086 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 2.0e-128 463.0 353 69.7
Duzib212G0264 Durio zibethinus HOM05D005591 ORTHO05D007131 6.0e-128 461.5 303 79.9
Gorai.011G147400 Gossypium raimondii HOM05D005591 ORTHO05D007131 1.3e-127 460.3 353 71.4
Gohir.A10G133200 Gossypium hirsutum HOM05D005591 ORTHO05D007131 2.3e-127 459.5 317 76.3
Solyc01g100250.3 Solanum lycopersicum HOM05D005591 ORTHO05D007131 2.3e-127 459.5 306 77.5
MSTRG.18314 Avicennia marina HOM05D005591 ORTHO05D007131 5.0e-127 458.4 294 79.6
Lj2P1154T29 Lonicera japonica HOM05D005591 ORTHO05D007131 6.6e-127 458.0 293 79.2
SalBow4G1598 Salvia bowleyana HOM05D005591 ORTHO05D007131 8.6e-127 457.6 318 75.2
Thecc.04G188000 Theobroma cacao HOM05D005591 ORTHO05D007131 2.5e-126 456.1 299 79.6
Actinidia35920 Actinidia chinensis HOM05D005591 ORTHO05D007131 3.3e-126 455.7 359 70.2
arahy.Tifrunner.gnm1.ann1.8VB164 Arachis hypogaea HOM05D005591 ORTHO05D007131 3.3e-126 455.7 303 75.9
arahy.Tifrunner.gnm1.ann1.ZABD6C Arachis hypogaea HOM05D005591 ORTHO05D007131 3.3e-126 455.7 303 75.9
Hma1.2p1_0349F.1_g132330 Hydrangea macrophylla HOM05D005591 ORTHO05D007131 3.3e-126 455.7 302 76.5
Sabra02G0178800 Salix brachista HOM05D005591 ORTHO05D007131 7.3e-126 454.5 301 79.7
ClCG08G003960 Citrullus lanatus HOM05D005591 ORTHO05D007131 1.6e-125 453.4 298 77.5
CsaV3_6G003160 Cucumis sativus L. HOM05D005591 ORTHO05D007131 1.6e-125 453.4 299 78.3
Phvul.008G142801 Phaseolus vulgaris HOM05D005591 ORTHO05D007131 2.1e-125 453.0 359 67.7
VMungo0720G0134 Vigna mungo HOM05D005591 ORTHO05D007131 3.6e-125 452.2 305 75.4
Glyma.20G208100 Glycine max HOM05D005591 ORTHO05D007131 6.2e-125 451.4 362 68.8
Gorai.006G226400 Gossypium raimondii HOM05D005591 ORTHO05D007131 6.2e-125 451.4 326 73.0
SalBow4G1474 Salvia bowleyana HOM05D005591 ORTHO05D007131 6.2e-125 451.4 318 75.5
Sed0000259 Sechium edule HOM05D005591 ORTHO05D007131 6.2e-125 451.4 299 76.3
Gohir.A09G209100 Gossypium hirsutum HOM05D005591 ORTHO05D007131 8.0e-125 451.1 319 74.3
Lj3g0022648 Lotus japonicus HOM05D005591 ORTHO05D007131 1.1e-124 450.7 374 65.5
TAR375G0642 Trochodendron aralioides HOM05D005591 ORTHO05D007131 1.1e-124 450.7 306 76.1
Psat5g221840 Pisum sativum HOM05D005591 ORTHO05D007131 1.4e-124 450.3 361 67.9
EL10Ac9g21576 Beta vulgaris HOM05D005591 ORTHO05D007131 1.8e-124 449.9 293 79.5
MELO3C011502.2 Cucumis melo HOM05D005591 ORTHO05D007131 1.8e-124 449.9 355 68.5
Potri.002G234400 Populus trichocarpa HOM05D005591 ORTHO05D007131 1.8e-124 449.9 301 79.1
Ca_26812_v3 Cicer arietinum L. HOM05D005591 ORTHO05D007131 2.3e-124 449.5 357 66.9
Medtr3g005100 Medicago truncatula HOM05D005591 ORTHO05D007131 2.3e-124 449.5 361 67.6
ClCG00G002040 Citrullus lanatus HOM05D005591 ORTHO05D007131 4.0e-124 448.7 296 77.7
Lalb_Chr12g0209371 Lupinus albus HOM05D005591 ORTHO05D007131 5.2e-124 448.4 322 72.4
Glyma.10G181900 Glycine max HOM05D005591 ORTHO05D007131 1.5e-123 446.8 364 66.8
Gohir.D09G202500 Gossypium hirsutum HOM05D005591 ORTHO05D007131 2.0e-123 446.4 326 72.1
TPR.G37202 Trifolium pratense HOM05D005591 ORTHO05D007131 2.0e-123 446.4 299 75.6
TPR.G25529 Trifolium pratense HOM05D005591 ORTHO05D007131 2.6e-123 446.0 300 75.3
AUR62010234 Chenopodium quinoa HOM05D005591 ORTHO05D007131 1.3e-122 443.7 293 78.2
AUR62013219 Chenopodium quinoa HOM05D005591 ORTHO05D007131 1.3e-122 443.7 293 78.2
Lalb_Chr12g0205911 Lupinus albus HOM05D005591 ORTHO05D007131 1.7e-122 443.4 311 73.6
Manes.16G070000 Manihot esculenta HOM05D005591 ORTHO05D007131 6.4e-122 441.4 306 75.2
Aqoxy5G02725 Aquilegia oxysepala HOM05D005591 ORTHO05D007131 8.3e-122 441.0 301 75.7
Nn3g18591 Nelumbo nucifera HOM05D005591 ORTHO05D007131 9.2e-121 437.6 345 67.5
MBI07_g20439_MAGBIO Magnolia biondii HOM05D005591 ORTHO05D007131 6.6e-119 431.4 306 72.5
SGA_v2.0_scaffold1G00602 Striga asiatica HOM05D005591 ORTHO05D002031 1.1e-118 430.6 294 74.5
COL.COLO4_08690 Corchorus olitorius HOM05D005591 ORTHO05D007131 3.6e-117 425.6 294 77.2
Lsat_1_v5_gn_1_5881 Lactuca sativa HOM05D005591 ORTHO05D007131 4.7e-117 425.2 259 82.6
SGA_v2.0_scaffold90G27691 Striga asiatica HOM05D005591 ORTHO05D007131 1.8e-116 423.3 294 74.8
ATR0681G262 Amborella trichopoda HOM05D005591 ORTHO05D007131 2.3e-116 422.9 273 78.0
SHI22008 Sapria himalayana HOM05D005591 ORTHO05D007131 8.3e-114 414.5 267 76.4
Cc11_g03530 Coffea canephora HOM05D005591 ORTHO05D007131 1.1e-113 414.1 306 71.6
Haze_12970 Corylus avellana HOM05D005591 ORTHO05D007131 2.4e-113 412.9 345 64.9
Eucgr.E02433 Eucalyptus grandis HOM05D005591 ORTHO05D007131 9.2e-113 411.0 289 73.7
Duzib151G0749 Durio zibethinus HOM05D005591 ORTHO05D007131 1.6e-112 410.2 242 86.4
Gohir.D10G133600 Gossypium hirsutum HOM05D005591 ORTHO05D007131 7.8e-112 407.9 240 86.7
Oeu061431.3 Olea europaea HOM05D005591 ORTHO05D007131 1.3e-111 407.1 299 71.9
Sopen01g043760 Solanum pennellii HOM05D005591 ORTHO05D007131 3.0e-111 406.0 273 76.6
Haze_05998 Corylus avellana HOM05D005591 ORTHO05D007131 3.9e-111 405.6 316 68.0
Hund00109 Selenicereus undatus HOM05D005591 ORTHO05D007131 5.1e-111 405.2 329 66.3
Atru.chr7.136 Acer truncatum HOM05D005591 ORTHO05D007131 1.5e-110 403.7 352 62.5
Cfa014468 Carpinus fangiana HOM05D005591 ORTHO05D007131 2.5e-110 402.9 300 72.0
ECA232G4773 Erigeron canadensis HOM05D005591 ORTHO05D007131 1.2e-109 400.6 306 67.6
GSVIVG01031642001 Vitis vinifera HOM05D005591 ORTHO05D007131 1.6e-109 400.2 324 67.3
CAN.G1273.6 Capsicum annuum HOM05D005591 ORTHO05D007131 4.7e-109 398.7 307 68.7
Sc08g0001750 Simmondsia chinensis HOM05D005591 ORTHO05D007131 1.4e-108 397.1 293 70.0
MD05G1209200 Malus domestica HOM05D005591 ORTHO05D007131 1.8e-108 396.7 289 72.3
CANSAT78G0984 Cannabis sativa HOM05D005591 ORTHO05D007131 1.2e-107 394.0 326 65.3
FAN16G2920 Fragaria x ananassa HOM05D005591 ORTHO05D007131 2.2e-106 389.8 317 65.3
PSO063G3984 Papaver somniferum HOM05D005591 ORTHO05D007131 2.2e-106 389.8 298 68.8
FAN11G3688 Fragaria x ananassa HOM05D005591 ORTHO05D007131 3.8e-106 389.0 317 65.0
FvH4_3g16560 Fragaria vesca HOM05D005591 ORTHO05D007131 4.9e-106 388.7 317 65.0
RcHm_v2.0_Chr5g0027591 Rosa chinensis HOM05D005591 ORTHO05D007131 4.9e-106 388.7 317 65.0
Migut.D00413 Erythranthe guttata HOM05D005591 ORTHO05D007131 6.4e-106 388.3 308 68.2
HanXRQChr10g0315741 Helianthus annuus HOM05D005591 ORTHO05D007131 6.4e-106 388.3 292 69.5
PSO339G5872 Papaver somniferum HOM05D005591 ORTHO05D007131 6.4e-106 388.3 298 68.5
MD10G1195600 Malus domestica HOM05D005591 ORTHO05D007131 1.1e-105 387.5 289 70.2
SEGI_17332 Sequoiadendron giganteum HOM05D005591 ORTHO05D007131 1.4e-105 387.1 255 75.3
Prupe.4G148300 Prunus persica HOM05D005591 ORTHO05D007131 2.4e-105 386.3 290 69.3
SMO367G0743 Selaginella moellendorffii HOM05D005591 ORTHO05D007131 9.3e-105 384.4 255 75.3
FAN21G2901 Fragaria x ananassa HOM05D005591 ORTHO05D007131 3.5e-104 382.5 317 64.7
Os04g0553000 Oryza sativa ssp. japonica HOM05D005591 ORTHO05D007131 2.3e-103 379.8 258 72.9
Pp3c1_16480 Physcomitrium patens HOM05D005591 ORTHO05D007131 4.3e-102 375.6 322 63.4
Zm00001eb074560 Zea mays HOM05D005591 ORTHO05D007131 4.3e-102 375.6 255 73.3
Mapoly0204s0010 Marchantia polymorpha HOM05D005591 ORTHO05D007131 9.6e-102 374.4 295 65.8
CDE02G1973 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 1.4e-100 370.5 356 57.3
CBR_g24384 Chara braunii HOM05D005591 ORTHO05D007131 5.3e-100 368.6 255 71.0
Rhsim02G0070200 Rhododendron simsii HOM05D005591 ORTHO05D007131 2.2e-98 363.2 316 64.2
AagrBONN_evm.TU.Sc2ySwM_117.3947 Anthoceros agrestis HOM05D005591 ORTHO05D007131 7.1e-97 358.2 241 76.8
FAN25G3010 Fragaria x ananassa HOM05D005591 ORTHO05D007131 3.0e-95 352.8 317 61.8
Medtr3g008040 Medicago truncatula HOM05D005591 ORTHO05D007131 7.6e-91 338.2 259 69.9
Cre06.g268200 Chlamydomonas reinhardtii HOM05D005591 ORTHO05D007131 6.0e-88 328.6 251 64.1
PRCOL_00005194 Prasinoderma coloniale HOM05D005591 ORTHO05D007131 9.6e-86 321.2 255 62.7
Cpa.g.sc8.310 Carica papaya HOM05D005591 ORTHO05D007131 3.2e-81 306.2 177 88.1
HPP92_028331 Vanilla planifolia HOM05D005591 ORTHO05D007131 4.2e-81 305.8 268 63.8
MCO01G348 Micromonas commoda HOM05D005591 ORTHO05D007131 1.7e-74 283.9 249 58.2
CDE11G0925 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 1.7e-66 257.3 191 72.3
vmacro15598 Vaccinium macrocarpon HOM05D005591 ORTHO05D007131 2.7e-64 250.0 290 53.8
unitig_22.g5460 Utricularia gibba HOM05D005591 ORTHO05D007131 3.9e-63 246.1 170 72.9
CBR_g4088 Chara braunii HOM05D005591 ORTHO05D007131 2.0e-51 207.2 146 71.2
BraA08t34904Z Brassica rapa HOM05D005591 ORTHO05D011946 2.2e-45 187.2 118 82.2
CBR_g4089 Chara braunii HOM05D005591 ORTHO05D007131 1.9e-41 174.1 114 70.2
unitig_22.g5461 Utricularia gibba HOM05D005591 ORTHO05D007131 1.6e-40 171.0 103 86.4
DCAR_018469 Daucus carota HOM05D005591 ORTHO05D007131 5.4e-36 156.0 103 75.7
DCAR_018470 Daucus carota HOM05D005591 ORTHO05D007131 5.4e-36 156.0 103 75.7
BcaC05g25857 Brassica carinata HOM05D005591 ORTHO05D007131 1.1e-25 121.7 63 100.0
Actinidia29179 Actinidia chinensis HOM05D005591 ORTHO05D007131 3.2e-20 103.6 60 88.3
Ca_28569_v3 Cicer arietinum L. HOM05D005591 ORTHO05D149412 1.2e-19 101.7 192 31.8
Cc01_g18470 Coffea canephora HOM05D005591 ORTHO05D007131 2.5e-09 67.4 45 62.2


User provided reference genes

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