Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p08020 Brassica napus HOM05D004799 ORTHO05D005500 4.6e-105 384.8 228 100.0
BraA06t24001Z Brassica rapa HOM05D004799 ORTHO05D005500 4.6e-105 384.8 228 100.0
BcaC05g25015 Brassica carinata HOM05D004799 ORTHO05D005500 7.9e-97 357.5 228 94.3
C05p09620 Brassica napus HOM05D004799 ORTHO05D005500 7.9e-97 357.5 228 94.3
BolC5t29704H Brassica oleracea HOM05D004799 ORTHO05D005500 7.9e-97 357.5 228 94.3
BcaB03g13259 Brassica carinata HOM05D004799 ORTHO05D005500 2.7e-89 332.4 228 83.3
Sp1g10030 Schrenkiella parvula HOM05D004799 ORTHO05D005500 1.3e-88 330.1 228 81.1
Thhalv10008698m.g Eutrema salsugineum HOM05D004799 ORTHO05D005500 5.3e-85 318.2 228 84.6
A08p33480 Brassica napus HOM05D004799 ORTHO05D005500 1.9e-82 309.7 228 76.8
C08p14470 Brassica napus HOM05D004799 ORTHO05D005500 6.1e-81 304.7 228 77.2
BraA08t35264Z Brassica rapa HOM05D004799 ORTHO05D005500 6.1e-81 304.7 228 74.6
Carub.0001s1103 Capsella rubella HOM05D004799 ORTHO05D005500 1.0e-80 303.9 227 75.8
BcaC07g38663 Brassica carinata HOM05D004799 ORTHO05D005500 1.3e-80 303.5 228 77.2
BolC8t49096H Brassica oleracea HOM05D004799 ORTHO05D005500 1.3e-80 303.5 228 77.2
Aa31LG1G3310 Aethionema arabicum HOM05D004799 ORTHO05D005500 2.3e-80 302.8 227 76.2
AL1G22490 Arabidopsis lyrata HOM05D004799 ORTHO05D005500 7.9e-73 277.7 228 72.8
AT1G11400 Arabidopsis thaliana HOM05D004799 ORTHO05D005500 2.4e-69 266.2 228 72.4
CARHR011640 Cardamine hirsuta HOM05D004799 ORTHO05D005500 3.4e-68 262.3 228 71.1
THA.LOC104809537 Tarenaya hassleriana HOM05D004799 ORTHO05D005500 1.5e-63 246.9 229 65.1
Cpa.g.sc2.26 Carica papaya HOM05D004799 ORTHO05D005500 9.1e-53 211.1 228 55.7
Haze_01626 Corylus avellana HOM05D004799 ORTHO05D005500 2.9e-51 206.1 233 54.1
Duzib132G0636 Durio zibethinus HOM05D004799 ORTHO05D005500 4.2e-50 202.2 229 55.5
Eucgr.I02711 Eucalyptus grandis HOM05D004799 ORTHO05D005500 7.2e-50 201.4 227 52.9
CANSAT11G1940 Cannabis sativa HOM05D004799 ORTHO05D005500 2.1e-49 199.9 229 60.7
Cfa005544 Carpinus fangiana HOM05D004799 ORTHO05D005500 2.1e-49 199.9 231 54.1
GSVIVG01023017001 Vitis vinifera HOM05D004799 ORTHO05D005500 3.6e-49 199.1 228 52.6
Manes.07G013800 Manihot esculenta HOM05D004799 ORTHO05D005500 1.0e-48 197.6 232 55.2
Sabra01G0161300 Salix brachista HOM05D004799 ORTHO05D005500 1.8e-48 196.8 232 53.9
Manes.10G132000 Manihot esculenta HOM05D004799 ORTHO05D005500 6.8e-48 194.9 220 53.2
CiPaw.06G148900 Carya illinoinensis HOM05D004799 ORTHO05D005500 8.8e-48 194.5 227 52.9
Duzib248G0546 Durio zibethinus HOM05D004799 ORTHO05D005500 1.5e-47 193.7 220 53.6
Lalb_Chr12g0204381 Lupinus albus HOM05D004799 ORTHO05D005500 3.4e-47 192.6 227 53.7
Gohir.A01G177000 Gossypium hirsutum HOM05D004799 ORTHO05D005500 5.7e-47 191.8 228 53.9
Ciclev10002345m.g Citrus clementina HOM05D004799 ORTHO05D005500 7.5e-47 191.4 231 52.8
QL02p098623 Quercus lobata HOM05D004799 ORTHO05D005500 7.5e-47 191.4 258 48.4
Gohir.A03G210900 Gossypium hirsutum HOM05D004799 ORTHO05D005500 2.2e-46 189.9 228 51.3
Gohir.D01G167800 Gossypium hirsutum HOM05D004799 ORTHO05D005500 3.7e-46 189.1 228 53.5
Potri.001G209100 Populus trichocarpa HOM05D004799 ORTHO05D005500 6.3e-46 188.3 221 53.4
Gorai.002G208500 Gossypium raimondii HOM05D004799 ORTHO05D005500 1.1e-45 187.6 228 53.1
Dinv19352 Davidia involucrata HOM05D004799 ORTHO05D005500 4.1e-45 185.7 230 50.9
FAN13G3307 Fragaria x ananassa HOM05D004799 ORTHO05D005500 9.1e-45 184.5 223 52.5
MD08G1225100 Malus domestica HOM05D004799 ORTHO05D005500 2.0e-44 183.3 228 51.3
FAN04G2475 Fragaria x ananassa HOM05D004799 ORTHO05D005500 2.7e-44 183.0 223 51.6
FvH4_5g30080 Fragaria vesca HOM05D004799 ORTHO05D005500 3.5e-44 182.6 224 52.7
Sopen01g046960 Solanum pennellii HOM05D004799 ORTHO05D005500 7.7e-44 181.4 231 51.1
Dinv24262 Davidia involucrata HOM05D004799 ORTHO05D005500 1.7e-43 180.3 232 56.5
CiPaw.05G042800 Carya illinoinensis HOM05D004799 ORTHO05D005500 2.2e-43 179.9 268 45.1
Lalb_Chr07g0185691 Lupinus albus HOM05D004799 ORTHO05D005500 2.2e-43 179.9 223 49.8
PGSC0003DMG400023776 Solanum tuberosum HOM05D004799 ORTHO05D005500 2.2e-43 179.9 231 51.1
Cc02_g22290 Coffea canephora HOM05D004799 ORTHO05D005500 2.9e-43 179.5 222 51.4
Sabra03G0013400 Salix brachista HOM05D004799 ORTHO05D005500 2.9e-43 179.5 222 51.4
Gohir.D02G232500 Gossypium hirsutum HOM05D004799 ORTHO05D005500 3.8e-43 179.1 229 50.7
RcHm_v2.0_Chr7g0224271 Rosa chinensis HOM05D004799 ORTHO05D005500 5.0e-43 178.7 226 52.2
Gorai.005G260300 Gossypium raimondii HOM05D004799 ORTHO05D005500 8.5e-43 177.9 229 50.2
Hma1.2p1_0217F.1_g091930 Hydrangea macrophylla HOM05D004799 ORTHO05D005500 8.5e-43 177.9 233 50.6
MSTRG.27841 Avicennia marina HOM05D004799 ORTHO05D005500 1.5e-42 177.2 215 50.7
Lj5A248T74 Lonicera japonica HOM05D004799 ORTHO05D005500 1.5e-42 177.2 222 53.6
Migut.B00668 Erythranthe guttata HOM05D004799 ORTHO05D005500 3.2e-42 176.0 215 50.7
MD15G1418700 Malus domestica HOM05D004799 ORTHO05D005500 4.2e-42 175.6 218 52.3
Potri.003G021500 Populus trichocarpa HOM05D004799 ORTHO05D005500 4.2e-42 175.6 215 52.1
FAN18G4597 Fragaria x ananassa HOM05D004799 ORTHO05D005500 7.2e-42 174.9 233 50.6
Peaxi162Scf00011g00139 Petunia axillaris HOM05D004799 ORTHO05D005500 9.4e-42 174.5 222 50.0
SGA_v2.0_scaffold110G31288 Striga asiatica HOM05D004799 ORTHO05D005500 2.7e-41 172.9 237 46.8
Atru.chr6.1081 Acer truncatum HOM05D004799 ORTHO05D005500 4.7e-41 172.2 203 52.2
Glyma.08G128300 Glycine max HOM05D004799 ORTHO05D005500 6.1e-41 171.8 218 49.5
arahy.Tifrunner.gnm1.ann1.ZS42GJ Arachis hypogaea HOM05D004799 ORTHO05D005500 2.3e-40 169.9 229 48.0
arahy.Tifrunner.gnm1.ann1.BG3XJE Arachis hypogaea HOM05D004799 ORTHO05D005500 5.2e-40 168.7 230 48.3
Hund19012 Selenicereus undatus HOM05D004799 ORTHO05D005500 6.8e-40 168.3 230 51.7
CsaV3_7G007080 Cucumis sativus L. HOM05D004799 ORTHO05D005500 1.2e-39 167.5 228 50.9
Lj6g0003329 Lotus japonicus HOM05D004799 ORTHO05D005500 1.2e-39 167.5 220 48.2
VMungo0251G3647 Vigna mungo HOM05D004799 ORTHO05D005500 1.2e-39 167.5 218 48.6
ClCG09G016220 Citrullus lanatus HOM05D004799 ORTHO05D005500 1.5e-39 167.2 226 49.6
TWI23G0644 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 2.6e-39 166.4 227 52.9
Sc14g0006850 Simmondsia chinensis HOM05D004799 ORTHO05D005500 5.7e-39 165.2 219 48.9
AUR62018552 Chenopodium quinoa HOM05D004799 ORTHO05D005500 1.3e-38 164.1 220 46.8
MELO3C018586.2 Cucumis melo HOM05D004799 ORTHO05D005500 1.3e-38 164.1 229 49.3
HanXRQChr03g0066881 Helianthus annuus HOM05D004799 ORTHO05D005500 2.2e-38 163.3 224 49.6
Medtr2g007770 Medicago truncatula HOM05D004799 ORTHO05D005500 2.2e-38 163.3 221 49.3
Ah.04g149450 Amaranthus hybridus HOM05D004799 ORTHO05D005500 3.7e-38 162.5 220 47.7
ATR0684G092 Amborella trichopoda HOM05D004799 ORTHO05D005500 3.7e-38 162.5 219 47.9
TAR628G0692 Trochodendron aralioides HOM05D004799 ORTHO05D005500 4.9e-38 162.2 221 47.1
AUR62020867 Chenopodium quinoa HOM05D004799 ORTHO05D005500 6.3e-38 161.8 220 46.4
Lsat_1_v5_gn_9_116381 Lactuca sativa HOM05D004799 ORTHO05D005500 6.3e-38 161.8 234 48.7
CsaV3_5G024750 Cucumis sativus L. HOM05D004799 ORTHO05D005500 1.1e-37 161.0 217 49.8
Aqoxy6G00151 Aquilegia oxysepala HOM05D004799 ORTHO05D005500 1.4e-37 160.6 220 46.8
TWI59G1038 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 1.4e-37 160.6 215 48.8
TAR376G0767 Trochodendron aralioides HOM05D004799 ORTHO05D005500 1.4e-37 160.6 226 44.7
Glyma.05G170200 Glycine max HOM05D004799 ORTHO05D005500 1.8e-37 160.2 222 50.5
EL10Ac3g07450 Beta vulgaris HOM05D004799 ORTHO05D005500 2.4e-37 159.8 219 48.4
CAN.G1352.25 Capsicum annuum HOM05D004799 ORTHO05D005500 4.1e-37 159.1 231 47.2
COL.COLO4_17895 Corchorus olitorius HOM05D004799 ORTHO05D005500 4.1e-37 159.1 228 46.9
TPR.G2141 Trifolium pratense HOM05D004799 ORTHO05D005500 5.4e-37 158.7 228 45.2
Psat1g220000 Pisum sativum HOM05D004799 ORTHO05D005500 7.0e-37 158.3 220 48.2
Thecc.02G041200 Theobroma cacao HOM05D004799 ORTHO05D005500 3.5e-36 156.0 229 47.6
DCAR_005625 Daucus carota HOM05D004799 ORTHO05D005500 5.9e-36 155.2 214 46.7
Phvul.002G251000 Phaseolus vulgaris HOM05D004799 ORTHO05D005500 5.9e-36 155.2 218 44.5
vmacro01776 Vaccinium macrocarpon HOM05D004799 ORTHO05D005500 5.9e-36 155.2 250 43.6
Oeu012743.2 Olea europaea HOM05D004799 ORTHO05D005500 2.3e-35 153.3 246 42.3
Sed0004816 Sechium edule HOM05D004799 ORTHO05D005500 6.6e-35 151.8 230 46.5
Nitab4.5_0010140g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 3.3e-34 149.4 221 45.7
unitig_26.g9556 Utricularia gibba HOM05D004799 ORTHO05D005500 7.2e-34 148.3 217 47.5
HPP92_019221 Vanilla planifolia HOM05D004799 ORTHO05D005500 3.6e-33 146.0 205 45.4
Oeu008877.2 Olea europaea HOM05D004799 ORTHO05D005500 1.8e-32 143.7 254 39.4
Rhsim11G0131600 Rhododendron simsii HOM05D004799 ORTHO05D005500 3.0e-32 142.9 324 35.5
FAN08G0327 Fragaria x ananassa HOM05D004799 ORTHO05D005500 2.6e-31 139.8 223 43.5
Ca_00089_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 1.3e-30 137.5 267 39.7
Ca_29928_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 1.3e-30 137.5 267 39.7
Lsat_1_v5_gn_7_77960 Lactuca sativa HOM05D004799 ORTHO05D005500 1.3e-30 137.5 228 44.3
Actinidia00218 Actinidia chinensis HOM05D004799 ORTHO05D005500 8.3e-30 134.8 229 43.7
CDE02G4357 Ceratophyllum demersum HOM05D004799 ORTHO05D005500 1.4e-29 134.0 214 41.6
SalBow6G1776 Salvia bowleyana HOM05D004799 ORTHO05D005500 7.0e-29 131.7 225 51.1
SalBow6G5744 Salvia bowleyana HOM05D004799 ORTHO05D005500 7.0e-29 131.7 225 51.1
Nitab4.5_0005539g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 2.0e-28 130.2 221 42.5
CSS0024882 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 5.9e-28 128.6 179 48.0
CSS0037217 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 5.9e-28 128.6 179 48.0
ECA240G2283 Erigeron canadensis HOM05D004799 ORTHO05D005500 5.9e-28 128.6 219 51.6
Os03g0262100 Oryza sativa ssp. japonica HOM05D004799 ORTHO05D005500 3.9e-27 125.9 220 41.8
Actinidia39055 Actinidia chinensis HOM05D004799 ORTHO05D005500 1.9e-26 123.6 189 45.0
BcaB03g13258 Brassica carinata HOM05D004799 ORTHO05D005500 5.6e-26 122.1 92 77.2
Zm00001eb011470 Zea mays HOM05D004799 ORTHO05D005500 2.8e-25 119.8 230 40.0
PSO528G0257 Papaver somniferum HOM05D004799 ORTHO05D005500 3.6e-25 119.4 218 44.0
HPP92_009361 Vanilla planifolia HOM05D004799 ORTHO05D005500 5.2e-24 115.5 218 40.4
Nn5g28066 Nelumbo nucifera HOM05D004799 ORTHO05D005500 6.8e-24 115.2 179 42.5
Mapoly0065s0027 Marchantia polymorpha HOM05D004799 ORTHO05D005500 3.7e-22 109.4 213 45.5
Ah.13g077920 Amaranthus hybridus HOM05D004799 ORTHO05D005500 9.5e-18 94.7 216 35.2
MBI03_g11149_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 1.6e-17 94.0 298 34.6
PSO170G0171 Papaver somniferum HOM05D004799 ORTHO05D005500 1.6e-17 94.0 218 35.8
SEGI_10500 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 2.8e-17 93.2 70 62.9
Atru.chr6.1045 Acer truncatum HOM05D004799 ORTHO05D005500 1.4e-16 90.9 125 47.2
Nn1g08619 Nelumbo nucifera HOM05D004799 ORTHO05D005500 1.4e-16 90.9 156 41.7
Glyma.14G170300 Glycine max HOM05D004799 ORTHO05D005500 3.1e-16 89.7 155 38.7
Prupe.1G562800 Prunus persica HOM05D004799 ORTHO05D005500 5.2e-16 89.0 157 42.0
CBR_g22015 Chara braunii HOM05D004799 ORTHO05D005500 5.8e-15 85.5 241 32.8
MSTRG.16532 Avicennia marina HOM05D004799 ORTHO05D005500 3.2e-13 79.7 155 40.0
AagrBONN_evm.TU.Sc2ySwM_344.2060 Anthoceros agrestis HOM05D004799 ORTHO05D005500 5.4e-13 79.0 58 63.8
Lj9C308T7 Lonicera japonica HOM05D004799 ORTHO05D005500 4.6e-12 75.9 129 43.4
MBI03_g11127_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 4.7e-09 65.9 131 42.7
A09p63310 Brassica napus HOM05D004799 ORTHO05D005500 3.1e-08 63.2 34 79.4
BraA09t41682Z Brassica rapa HOM05D004799 ORTHO05D005500 3.1e-08 63.2 34 79.4
SMO367G0479 Selaginella moellendorffii HOM05D004799 ORTHO05D005500 3.1e-08 63.2 40 70.0
GSVIVG01013911001 Vitis vinifera HOM05D004799 ORTHO05D005500 1.2e-07 61.2 85 47.1
Lj5A252G43 Lonicera japonica HOM05D012292 ORTHO05D012234 2.6e-07 60.1 68 47.1
CSS0012117 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 7.6e-07 58.5 42 71.4
CSS0018254 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 1.7e-06 57.4 42 71.4
Cre06.g279250 Chlamydomonas reinhardtii HOM05D004799 ORTHO05D005500 2.9e-06 56.6 205 30.2
SEGI_00858 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 4.9e-06 55.8 121 38.0
BolC8t50896H Brassica oleracea HOM05D014273 ORTHO05D041832 6.4e-06 55.5 40 60.0


User provided reference genes

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