Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p43040 Brassica napus HOM05D004899 ORTHO05D006580 3.6e-219 764.6 384 100.0
A03p33610 Brassica napus HOM05D004899 ORTHO05D006580 4.0e-194 681.4 390 88.5
BraA03t12536Z Brassica rapa HOM05D004899 ORTHO05D006580 2.2e-192 675.6 395 87.3
BolC3t16350H Brassica oleracea HOM05D004899 ORTHO05D006580 3.7e-192 674.9 390 87.2
BcaC01g04376 Brassica carinata HOM05D004899 ORTHO05D006580 6.4e-192 674.1 390 87.2
C03p40810 Brassica napus HOM05D004899 ORTHO05D006580 6.4e-192 674.1 390 87.2
Sp3g03310 Schrenkiella parvula HOM05D004899 ORTHO05D006580 2.7e-190 668.7 394 86.0
BcaC05g30197 Brassica carinata HOM05D004899 ORTHO05D006580 4.6e-190 667.9 393 88.5
Carub.0003s0362 Capsella rubella HOM05D004899 ORTHO05D006580 1.5e-188 662.9 394 85.0
AL3G14410 Arabidopsis lyrata HOM05D004899 ORTHO05D006580 1.9e-188 662.5 394 85.0
Thhalv10020878m.g Eutrema salsugineum HOM05D004899 ORTHO05D006580 2.1e-187 659.1 396 84.8
AT3G04460 Arabidopsis thaliana HOM05D004899 ORTHO05D006580 2.8e-187 658.7 394 84.5
BcaB04g19333 Brassica carinata HOM05D004899 ORTHO05D006580 1.3e-179 633.3 378 85.7
Aa31LG5G14890 Aethionema arabicum HOM05D004899 ORTHO05D006580 1.6e-179 632.9 394 81.0
THA.LOC104820770 Tarenaya hassleriana HOM05D004899 ORTHO05D006580 2.2e-176 622.5 394 79.7
BcaC05g29943 Brassica carinata HOM05D004899 ORTHO05D006580 3.2e-175 618.6 384 83.6
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 3.4e-153 545.4 392 70.2
Duzib106G1539 Durio zibethinus HOM05D004899 ORTHO05D006580 1.1e-151 540.4 394 68.5
Thecc.05G269900 Theobroma cacao HOM05D004899 ORTHO05D006580 1.4e-151 540.0 394 69.0
Manes.08G140200 Manihot esculenta HOM05D004899 ORTHO05D006580 1.9e-151 539.7 395 70.4
Potri.013G047800 Populus trichocarpa HOM05D004899 ORTHO05D006580 9.3e-151 537.3 392 68.6
Potri.019G020000 Populus trichocarpa HOM05D004899 ORTHO05D006580 2.7e-150 535.8 393 69.2
Gohir.D11G256500 Gossypium hirsutum HOM05D004899 ORTHO05D006580 4.6e-150 535.0 392 69.1
Gohir.A11G246300 Gossypium hirsutum HOM05D004899 ORTHO05D006580 7.9e-150 534.3 392 68.1
Gorai.007G274800 Gossypium raimondii HOM05D004899 ORTHO05D006580 7.9e-150 534.3 392 69.1
C05p62800 Brassica napus HOM05D004899 ORTHO05D006580 1.8e-149 533.1 376 75.3
HanXRQChr08g0216941 Helianthus annuus HOM05D004899 ORTHO05D006580 3.9e-149 531.9 392 68.9
Dinv06242 Davidia involucrata HOM05D004899 ORTHO05D006580 4.3e-148 528.5 394 69.5
CSS0003371 Camellia sinensis var. sinensis HOM05D004899 ORTHO05D006580 5.7e-148 528.1 394 68.8
Hund22166 Selenicereus undatus HOM05D004899 ORTHO05D006580 5.7e-148 528.1 392 66.8
EL10Ac4g08990 Beta vulgaris HOM05D004899 ORTHO05D006580 1.6e-147 526.6 392 66.1
RcHm_v2.0_Chr3g0449481 Rosa chinensis HOM05D004899 ORTHO05D006580 2.2e-147 526.2 395 69.4
Prupe.6G350900 Prunus persica HOM05D004899 ORTHO05D006580 3.7e-147 525.4 395 68.4
CiPaw.08G118600 Carya illinoinensis HOM05D004899 ORTHO05D006580 4.8e-147 525.0 393 68.4
Sc20g0000690 Simmondsia chinensis HOM05D004899 ORTHO05D006580 4.8e-147 525.0 392 67.3
TWI36G0265 Tripterygium wilfordii HOM05D004899 ORTHO05D006580 6.3e-147 524.6 392 67.6
Eucgr.B02154 Eucalyptus grandis HOM05D004899 ORTHO05D006580 8.2e-147 524.2 392 68.9
FvH4_6g01740 Fragaria vesca HOM05D004899 ORTHO05D006580 1.4e-146 523.5 395 68.9
FAN14G2287 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.4e-146 523.5 395 68.9
FAN14G4075 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.4e-146 523.5 395 68.9
MD04G1231200 Malus domestica HOM05D004899 ORTHO05D006580 2.0e-145 519.6 395 67.1
FAN05G0331 Fragaria x ananassa HOM05D004899 ORTHO05D006580 3.4e-145 518.8 395 68.1
FAN05G3121 Fragaria x ananassa HOM05D004899 ORTHO05D006580 3.4e-145 518.8 395 68.1
Peaxi162Scf00015g02911 Petunia axillaris HOM05D004899 ORTHO05D006580 7.7e-145 517.7 394 67.5
GSVIVG01023441001 Vitis vinifera HOM05D004899 ORTHO05D006580 1.0e-144 517.3 394 66.5
QL03p029772 Quercus lobata HOM05D004899 ORTHO05D006580 1.7e-144 516.5 409 65.8
Lsat_1_v5_gn_8_25181 Lactuca sativa HOM05D004899 ORTHO05D006580 2.2e-144 516.2 392 68.9
FAN09G4068 Fragaria x ananassa HOM05D004899 ORTHO05D006580 2.9e-144 515.8 395 67.6
PGSC0003DMG400023503 Solanum tuberosum HOM05D004899 ORTHO05D006580 8.5e-144 514.2 394 67.8
ClCG11G010490 Citrullus lanatus HOM05D004899 ORTHO05D006580 1.1e-143 513.8 393 66.4
Actinidia34758 Actinidia chinensis HOM05D004899 ORTHO05D006580 2.5e-143 512.7 394 67.0
PGR142G4366 Punica granatum HOM05D004899 ORTHO05D006580 3.2e-143 512.3 393 67.7
MELO3C008694.2 Cucumis melo HOM05D004899 ORTHO05D006580 4.2e-143 511.9 393 65.9
CsaV3_2G009880 Cucumis sativus L. HOM05D004899 ORTHO05D006580 5.5e-143 511.5 393 65.9
Solyc05g054950.2 Solanum lycopersicum HOM05D004899 ORTHO05D006580 7.2e-143 511.1 394 67.3
Rhsim09G0133700 Rhododendron simsii HOM05D004899 ORTHO05D006580 9.4e-143 510.8 394 66.5
Sabra19G0032200 Salix brachista HOM05D004899 ORTHO05D006580 9.4e-143 510.8 393 66.9
CAN.G1465.15 Capsicum annuum HOM05D004899 ORTHO05D006580 1.2e-142 510.4 395 67.6
COL.COLO4_15501 Corchorus olitorius HOM05D004899 ORTHO05D006580 1.2e-142 510.4 376 68.1
CANSAT54G0581 Cannabis sativa HOM05D004899 ORTHO05D006580 1.6e-142 510.0 391 65.7
Sopen05g033410 Solanum pennellii HOM05D004899 ORTHO05D006580 6.1e-142 508.1 394 67.0
Nn1g02931 Nelumbo nucifera HOM05D004899 ORTHO05D006580 6.7e-141 504.6 395 65.3
Migut.F01538 Erythranthe guttata HOM05D004899 ORTHO05D006580 2.0e-140 503.1 394 65.2
MSTRG.8229 Avicennia marina HOM05D004899 ORTHO05D006580 3.3e-140 502.3 394 65.2
Sed0011238 Sechium edule HOM05D004899 ORTHO05D006580 5.7e-140 501.5 396 64.9
Cc02_g08720 Coffea canephora HOM05D004899 ORTHO05D006580 7.4e-140 501.1 402 65.2
AUR62040914 Chenopodium quinoa HOM05D004899 ORTHO05D006580 1.3e-139 500.4 392 64.3
arahy.Tifrunner.gnm1.ann1.A8VMLZ Arachis hypogaea HOM05D004899 ORTHO05D006580 1.7e-139 500.0 397 65.0
arahy.Tifrunner.gnm1.ann1.VXFY9N Arachis hypogaea HOM05D004899 ORTHO05D006580 3.7e-139 498.8 397 64.7
SGA_v2.0_scaffold426G51496 Striga asiatica HOM05D004899 ORTHO05D006580 2.4e-138 496.1 393 66.2
TAR362G0172 Trochodendron aralioides HOM05D004899 ORTHO05D006580 4.1e-138 495.4 394 64.0
MBI07_g12932_MAGBIO Magnolia biondii HOM05D004899 ORTHO05D006580 1.0e-136 490.7 398 64.1
VMungo0540G0495 Vigna mungo HOM05D004899 ORTHO05D006580 1.0e-136 490.7 391 63.4
Glyma.03G250100 Glycine max HOM05D004899 ORTHO05D006580 1.3e-136 490.3 391 63.9
Glyma.19G247700 Glycine max HOM05D004899 ORTHO05D006580 8.5e-136 487.6 388 63.9
Lj2A44T81 Lonicera japonica HOM05D004899 ORTHO05D006580 1.1e-135 487.3 438 59.6
SalBow6G5574 Salvia bowleyana HOM05D004899 ORTHO05D006580 1.4e-135 486.9 417 61.2
Aqoxy5G00161 Aquilegia oxysepala HOM05D004899 ORTHO05D006580 2.1e-134 483.0 388 64.7
Lalb_Chr04g0253351 Lupinus albus HOM05D004899 ORTHO05D006580 1.4e-133 480.3 388 63.1
Atru.chr2.1001 Acer truncatum HOM05D004899 ORTHO05D006580 3.0e-133 479.2 371 67.1
Ciclev10024089m.g Citrus clementina HOM05D004899 ORTHO05D006580 3.9e-133 478.8 371 67.4
Phvul.006G104800 Phaseolus vulgaris HOM05D004899 ORTHO05D006580 4.4e-132 475.3 393 61.3
Ca_11390_v3 Cicer arietinum L. HOM05D004899 ORTHO05D006580 7.4e-132 474.6 386 63.5
Lj1g0026343 Lotus japonicus HOM05D004899 ORTHO05D006580 1.3e-131 473.8 411 60.8
PSO674G0057 Papaver somniferum HOM05D004899 ORTHO05D006580 1.7e-131 473.4 392 62.8
AUR62004828 Chenopodium quinoa HOM05D004899 ORTHO05D006580 2.2e-131 473.0 356 64.9
Zm00001eb046420 Zea mays HOM05D004899 ORTHO05D006580 2.8e-131 472.6 393 61.8
Os10g0467200 Oryza sativa ssp. japonica HOM05D004899 ORTHO05D006580 5.3e-130 468.4 393 60.8
DCAR_023087 Daucus carota HOM05D004899 ORTHO05D006580 2.7e-126 456.1 391 61.9
TPR.G10414 Trifolium pratense HOM05D004899 ORTHO05D006580 2.7e-126 456.1 391 59.3
ATR0736G049 Amborella trichopoda HOM05D004899 ORTHO05D006580 6.1e-126 454.9 392 60.2
Nitab4.5_0003965g0030 Nicotiana tabacum HOM05D004899 ORTHO05D006580 1.4e-122 443.7 394 60.4
CDE05G2618 Ceratophyllum demersum HOM05D004899 ORTHO05D006580 2.5e-119 433.0 399 58.1
unitig_899.g15065 Utricularia gibba HOM05D004899 ORTHO05D006580 2.7e-118 429.5 401 57.6
vmacro10377 Vaccinium macrocarpon HOM05D004899 ORTHO05D006580 3.0e-117 426.0 426 54.7
Medtr1g116380 Medicago truncatula HOM05D004899 ORTHO05D006580 1.0e-109 401.0 366 56.6
Nitab4.5_0000914g0090 Nicotiana tabacum HOM05D004899 ORTHO05D006580 4.0e-109 399.1 394 57.1
CARHR078590 Cardamine hirsuta HOM05D004899 ORTHO05D006580 1.2e-108 397.5 239 84.5
SMO367G0182 Selaginella moellendorffii HOM05D004899 ORTHO05D006580 1.2e-108 397.5 391 53.7
Ah.06g191810 Amaranthus hybridus HOM05D004899 ORTHO05D006580 1.0e-104 384.4 392 52.6
AagrBONN_evm.TU.Sc2ySwM_228.2413 Anthoceros agrestis HOM05D004899 ORTHO05D006580 3.6e-102 375.9 399 50.6
Pp3c17_6400 Physcomitrium patens HOM05D004899 ORTHO05D006580 4.0e-101 372.5 396 51.5
Psat0s1997g0040 Pisum sativum HOM05D004899 ORTHO05D006580 3.9e-96 355.9 289 62.3
Cpa.g.sc306.4 Carica papaya HOM05D004899 ORTHO05D006580 9.5e-95 351.3 392 51.5
HPP92_008536 Vanilla planifolia HOM05D004899 ORTHO05D006580 4.9e-91 339.0 285 60.4
Mapoly0097s0077 Marchantia polymorpha HOM05D004899 ORTHO05D006580 1.6e-89 334.0 318 55.7
Haze_04413 Corylus avellana HOM05D004899 ORTHO05D006580 2.3e-72 276.9 329 49.2
RhsimUnG0045000 Rhododendron simsii HOM05D004899 ORTHO05D006580 4.3e-71 272.7 368 46.2
CARHR078600 Cardamine hirsuta HOM05D004899 ORTHO05D006580 2.4e-69 266.9 153 85.0
MD12G1249500 Malus domestica HOM05D004899 ORTHO05D006580 4.0e-69 266.2 293 53.2
SHI31416 Sapria himalayana HOM05D004899 ORTHO05D006580 2.9e-67 260.0 379 43.8
TPR.G8890 Trifolium pratense HOM05D001167 ORTHO05D001054 2.5e-63 246.9 170 71.2
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 1.7e-59 234.2 162 77.8
CBR_g51833 Chara braunii HOM05D004899 ORTHO05D006580 2.9e-59 233.4 543 31.5
Cre06.g263602 Chlamydomonas reinhardtii HOM05D004899 ORTHO05D006580 5.3e-53 212.6 412 33.0
Oeu050631.1 Olea europaea HOM05D004899 ORTHO05D006580 7.6e-52 208.8 295 45.4
CANSAT80G2333 Cannabis sativa HOM05D004899 ORTHO05D006580 2.1e-49 200.7 182 56.0
CANSAT80G2786 Cannabis sativa HOM05D004899 ORTHO05D006580 4.6e-49 199.5 182 56.0
BolC5t34933H Brassica oleracea HOM05D004899 ORTHO05D006580 8.7e-48 195.3 120 85.8
MCO09G554 Micromonas commoda HOM05D004899 ORTHO05D006580 1.1e-47 194.9 410 33.9
PRCOL_00005674 Prasinoderma coloniale HOM05D004899 ORTHO05D006580 1.6e-46 191.0 387 34.9
C01p22380 Brassica napus HOM05D004899 ORTHO05D006580 8.2e-46 188.7 135 76.3
BcaC06g35909 Brassica carinata HOM05D004899 ORTHO05D006580 9.0e-45 185.3 147 70.7
Cc06_g01540 Coffea canephora HOM05D004899 ORTHO05D006580 1.2e-41 174.9 125 72.0
BraA05t23048Z Brassica rapa HOM05D004899 ORTHO05D006580 2.1e-41 174.1 93 95.7
BolC6t38557H Brassica oleracea HOM05D004899 ORTHO05D006580 4.6e-41 172.9 136 72.1
Hma1.2p1_1336F.1_g276500 Hydrangea macrophylla HOM05D004899 ORTHO05D006580 2.5e-39 167.2 122 71.3
Cc05_g01300 Coffea canephora HOM05D004899 ORTHO05D006580 2.1e-38 164.1 160 58.8
BraA04t16133Z Brassica rapa HOM05D004899 ORTHO05D006580 1.0e-35 155.2 113 76.1
MD00G1148800 Malus domestica HOM05D004899 ORTHO05D006580 3.8e-35 153.3 207 46.4
Cc06_g14670 Coffea canephora HOM05D004899 ORTHO05D006580 4.1e-29 133.3 178 47.8
Oeu040904.1 Olea europaea HOM05D004899 ORTHO05D006580 1.2e-28 131.7 69 82.6
BcaC09g50711 Brassica carinata HOM05D004899 ORTHO05D006580 1.3e-27 128.3 111 65.8
SEGI_05516 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 3.2e-26 123.6 91 67.0
MD08G1214200 Malus domestica HOM05D004899 ORTHO05D006580 3.3e-23 113.6 71 76.1
SEGI_08581 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 2.6e-20 104.0 148 39.9
SEGI_06182 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 1.3e-19 101.7 76 59.2
BolC7t41419H Brassica oleracea HOM05D004899 ORTHO05D006580 1.1e-18 98.6 63 76.2
Psat3g057720 Pisum sativum HOM05D004899 ORTHO05D006580 1.6e-17 94.7 50 80.0
FAN18G0756 Fragaria x ananassa HOM05D004899 ORTHO05D019122 3.9e-16 90.1 81 60.5
SalBow6G6423 Salvia bowleyana HOM05D031023 ORTHO05D019122 4.4e-15 86.7 70 61.4
FvH4_3g30700 Fragaria vesca HOM05D004899 ORTHO05D019122 3.7e-14 83.6 57 70.2
FvH4_4g13630 Fragaria vesca HOM05D004899 ORTHO05D019122 2.9e-11 73.9 44 79.5
Psat3g113200 Pisum sativum HOM05D004899 ORTHO05D034818 8.8e-08 62.4 60 50.0
Cc04_g06470 Coffea canephora HOM05D004899 ORTHO05D034818 2.0e-07 61.2 38 76.3
A04p04990 Brassica napus HOM05D004899 ORTHO05D006580 2.6e-07 60.8 43 67.4
Haze_02280 Corylus avellana HOM05D000013 ORTHO05D000689 5.7e-07 59.7 35 80.0
SalBow5G1052 Salvia bowleyana HOM05D031023 ORTHO05D019122 1.7e-06 58.2 73 43.8
SalBow6G4382 Salvia bowleyana HOM05D031023 ORTHO05D019122 1.7e-06 58.2 73 43.8
SalBow8G1246 Salvia bowleyana HOM05D031023 ORTHO05D019122 1.7e-06 58.2 73 43.8
BolC1t02169H Brassica oleracea HOM05D004899 ORTHO05D006580 3.7e-06 57.0 38 81.6
BcaB06g28621 Brassica carinata HOM05D002665 ORTHO05D002991 8.2e-06 55.8 30 83.3
BcaB08g35980 Brassica carinata HOM05D042867 ORTHO05D094468 8.2e-06 55.8 83 47.0


User provided reference genes

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